prot_S-dermatodea_contig10844.572.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig10844.572.1
Unique Nameprot_S-dermatodea_contig10844.572.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length311
Homology
BLAST of mRNA_S-dermatodea_contig10844.572.1 vs. uniprot
Match: D7FNP3_ECTSI (Poly(A) binding protein, cytoplasmic 4-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNP3_ECTSI)

HSP 1 Score: 374 bits (960), Expect = 1.580e-122
Identity = 224/339 (66.08%), Postives = 250/339 (73.75%), Query Frame = 0
Query:    1 ARQGVELAGRRVRVGWAQKNTSLYVGGLEAG-ITTDMLVREFARFGPLDKELTAIKPGAKFGFVKYRYRLHAETAKKELNERPAFGGLCPALHIEWNSVESGSRADGSETAASTDENTTDGGXXXXXXXXXXXS---------------------GHMRHQSRGEGGSSNTVHVQFEGEQSRVSAVNEAMIRKTFTQWEPLVDVVIPASRYNGVSPGPRQLPRCWGFVHFPPTPDGEHAAKDAMQALNGTTIAEMKVHCTMNRTSGGS---GNTWRRQGGMGIAERGGKSRRHSSGGADDGRAMMHG---QGFGGRPARSSMESPGARGGXXXGWGGNV 311
            A QGVEL GRRVRVGWAQKNTSLYVGGLE G ITT+MLVREFARFGPLDKELT IKPGAKFGFVKYRYRLHAE AKKELNERPAF GLCP+L IEWNSVES ++A  SETA S         XXXXXXXXXXX                       H RH  RGE  SS+TVHVQFEG+Q  VSAVNE MIRK FT+WEP+VD+VIPASR+NGVSPGPRQLPRCW FVHFPPTPDGE AA DA++ LNGTTI+E++VHCTM+R  GGS   G+ WR+QG         ++RRHS+      RAM H    QGFGGRP+RSS++ PGA+ G   GWGG +
Sbjct:  265 AMQGVELGGRRVRVGWAQKNTSLYVGGLEGGAITTEMLVREFARFGPLDKELTTIKPGAKFGFVKYRYRLHAEAAKKELNERPAFDGLCPSLEIEWNSVESSAQA--SETAGSEKSTAXXXXXXXXXXXXXXXXKEXXXXXXXXXXXXXXXXXXXAHSRHP-RGEV-SSHTVHVQFEGDQGHVSAVNEVMIRKCFTKWEPVVDIVIPASRFNGVSPGPRQLPRCWAFVHFPPTPDGERAAADAIKGLNGTTISELRVHCTMSR--GGSTRAGSPWRKQGXXXXXXN--RARRHSTXXXXXDRAMGHAXXXQGFGGRPSRSSLDHPGAQQGRSGGWGGQM 595          
BLAST of mRNA_S-dermatodea_contig10844.572.1 vs. uniprot
Match: A0A6H5L4J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4J2_9PHAE)

HSP 1 Score: 340 bits (872), Expect = 5.050e-108
Identity = 196/277 (70.76%), Postives = 215/277 (77.62%), Query Frame = 0
Query:    1 ARQGVELAGRRVRVGWAQKNTSLYVGGLEAG-ITTDMLVREFARFGPLDKELTAIKPGAKFGFVKYRYRLHAETAKKELNERPAFGGLCPALHIEWNSVESGSRADGSETAASTDENTTD---------------------GGXXXXXXXXXXXSGHMRHQSRGEGGSSNTVHVQFEGEQSRVSAVNEAMIRKTFTQWEPLVDVVIPASRYNGVSPGPRQLPRCWGFVHFPPTPDGEHAAKDAMQALNGTTIAEMKVHCTMNRTSGGS-GNTWRRQG 254
            A QGVEL GRRVRVGWAQKNTSLYVGGLE G ITT+MLVREFARFGPLDKELT IKPGAKFGFVKYRYRLHAE AKKELNERPAF GLCP+L IEWNSVES ++A  SETA S      D                       XXXXXXXXXXX  H RH  RGE  SS+TVHVQFEG+Q  VSAVNE MIRK FT+WEP+VD+VIPASR+NGVSPGPRQLPRCW FVHFPPTPDGE AA +A++ LNGTTI+E++VHCTM+R  G S G+ W +QG
Sbjct:  128 AMQGVELGGRRVRVGWAQKNTSLYVGGLEGGAITTEMLVREFARFGPLDKELTTIKPGAKFGFVKYRYRLHAEAAKKELNERPAFDGLCPSLEIEWNSVESSAQA--SETAGSEKSTAEDRTXXXXXXXXXXXXKXXXXXXXXXXXXXXXXXXXXAHSRHP-RGEV-SSHTVHVQFEGDQGHVSAVNEVMIRKCFTKWEPVVDIVIPASRFNGVSPGPRQLPRCWAFVHFPPTPDGERAAANAIKDLNGTTISELRVHCTMSRGGGTSAGSPWSKQG 400          
BLAST of mRNA_S-dermatodea_contig10844.572.1 vs. uniprot
Match: W7TSQ6_9STRA (Tia1 cytotoxic granule-associated rna binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSQ6_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 4.210e-16
Identity = 68/248 (27.42%), Postives = 118/248 (47.58%), Query Frame = 0
Query:    3 QGVELAGRRVRVGWAQKNTSLYVGGLEAGITTDMLVREFARFGPLDKELTAIKPG--AKFGFVKYRYRLHAETAKKELNERPAFGGLCPALHIEWNSVESGSRADGSETAASTDENTTDGGXXXXXXXXXXXSGHMRHQSRGEGGSSNTVHVQFEGEQSRVSAVNEAMIRKTFTQWEPLVDVVIPASRYNGVSPGPRQLPRC---WGFVHFPPTPDGEHAAKDAMQALNGTTIAEMKVHCTMNRTSGG 245
            QG ++ GRR+R+GWAQ+NT+L++G L+     + L R F  FG L    + ++ G   K+G VK+  R  AETA++E++ R    G  P + + W+  ++ ++  G      ++E  +                 +   SR       +VHV FE +    + V E +I   F  +  ++ V++P       S     +  C   +GFVHF  +  G   A +A++ L G  +A +++ C  +R  GG
Sbjct:  167 QGADIQGRRIRIGWAQRNTTLFIGDLDESTNVEDLHRTFGPFGLLYTNDSYLRQGKCGKYGSVKFMSRKDAETARREMHGRVLRDGTRP-IRVVWHHPQTITKKTGLSVPLPSNEQHS----RELVHIPPPPPAGVLVSSR-----PYSVHVHFEAD-GMENLVTENLIYGLFAPFGQIIAVILPQGPGILCSDQNEDVSCCRRGYGFVHFTGSALGRLCAIEAIRTLQGEIVAGIRLQCAFSRKPGG 403          
BLAST of mRNA_S-dermatodea_contig10844.572.1 vs. uniprot
Match: A0A7S3DFR0_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DFR0_9EUKA)

HSP 1 Score: 88.2 bits (217), Expect = 7.190e-16
Identity = 41/97 (42.27%), Postives = 64/97 (65.98%), Query Frame = 0
Query:    4 GVELAGRRVRVGWAQKNTSLYVGGLEAGITTDMLVREFARFGPLDKELTAIKPGAKFGFVKYRYRLHAETAKKELNERPAFGGLCPALHIEWNSVES 100
            G  +  R +R+GWAQKNT+L++G L+A +T+++L  EF +FGPL +E T +K G  +GFV++R R  AETAK+E+  +   G +   + I W   +S
Sbjct:   89 GARIGERAIRLGWAQKNTNLFIGDLDASVTSEILFNEFKQFGPLFEEDTFVKEGMSYGFVRFRKREDAETAKREMQGKNFHGRV---IRIGWGDAKS 182          
BLAST of mRNA_S-dermatodea_contig10844.572.1 vs. uniprot
Match: A0A836CDW8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDW8_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 2.050e-13
Identity = 90/303 (29.70%), Postives = 125/303 (41.25%), Query Frame = 0
Query:    6 ELAGRRVRVGWAQKNTSLYVGGLEAGITTDMLVREFARFGPLDKELTAIKP-GAKFGFVKYRYRLHAETAKKELNERPAFGGLCPA-LHIEWNSVESGSRADGSETAASTDENTTDGGXXXXXXXXXXXSGHMRHQSRGEGGSSNTVHVQFEGEQ-SRVSAVNEAMIRKTFTQWEPLVDVVIP---------------------------------------ASRYNGVS---------------PGPRQLP----RCWGFVHFPPTPDGEHAAKDAMQALNGT-TIAEMKVHCTMNRTSGGS 246
            E+ GRR+RVGWAQKN +L V GL  G+T + +   F  FG L++E T +   G+    VKYR RLHAE A+++LN   A G   PA L ++W S  +G    G+++ A+       GG                            V V  EGE  S +  V E ++R  F  + PLV V  P                                       A+   G+S               P P   P    R +  V FPPT  G+  A  AM A++GT T + +KV C++ R+ G S
Sbjct:   80 EVHGRRIRVGWAQKNAALAVSGLPDGVTAEQVKALFRPFGALEEENTQLMTDGSGTAVVKYRNRLHAEDARRQLNGSQALG---PAPLRVDW-SAPAGGAVGGAQSKAAPHR----GGREATAPAPCR------------------VQVMLEGEAASDLQEVEETVLR-LFQDFAPLVSVSTPRAEAARAPSAAKAGQDAXXXXXXXXXXXXXXXXXTAPKEAAPATGMSAADALVADTQGLQLRPRPLHKPARPQRAYCAVTFPPTRAGQARAMAAMAAISGTVTPSGLKVTCSLIRSEGRS 355          
BLAST of mRNA_S-dermatodea_contig10844.572.1 vs. uniprot
Match: L8H825_ACACA (RNA recognition motif domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H825_ACACA)

HSP 1 Score: 79.0 bits (193), Expect = 8.600e-13
Identity = 39/89 (43.82%), Postives = 59/89 (66.29%), Query Frame = 0
Query:    7 LAGRRVRVGWAQKNTSLYVGGLEAGITTDMLVREFARFGPLDKELTAIKPGAKFGFVKYRYRLHAETAKKELNERPAFGGLCPALHIEW 95
            + GR +R+GWAQKNT+L++G L+  IT+  L   F +FGP+ +E T +K    +GFV++R+R HAE AK+E+N +   G    A+ I W
Sbjct:  128 VGGRAIRIGWAQKNTNLFIGDLDPSITSAQLREVFRQFGPIYEEETFVK-NRNYGFVRFRHRKHAEMAKREMNNK-VLGAR--AIRIGW 212          
BLAST of mRNA_S-dermatodea_contig10844.572.1 vs. uniprot
Match: A0A7S0TF52_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Elphidium margaritaceum TaxID=933848 RepID=A0A7S0TF52_9EUKA)

HSP 1 Score: 76.6 bits (187), Expect = 2.510e-12
Identity = 40/79 (50.63%), Postives = 57/79 (72.15%), Query Frame = 0
Query:    4 GVELAGRRVRVGWAQKNTSLYV---GGLEAGITTDMLVREFARFGPLDKELTAIKPGAKFGFVKYRYRLHAETAKKELN 79
            G+E+AGR +R+GWAQKNT+L+V   G +E  IT + L   F+ FGP+ +E T +K   K+GFVK+++RLHAE AK  L+
Sbjct:   67 GLEIAGRAIRIGWAQKNTNLFVCLVGDVERHITGEHLREIFSEFGPIYEEDTFVKRN-KYGFVKFKHRLHAEKAKAALD 144          
BLAST of mRNA_S-dermatodea_contig10844.572.1 vs. uniprot
Match: A0A7S0DL40_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DL40_9EUKA)

HSP 1 Score: 72.0 bits (175), Expect = 2.040e-10
Identity = 37/79 (46.84%), Postives = 52/79 (65.82%), Query Frame = 0
Query:    1 ARQGVELAGRRVRVGWAQKNTSLYVGGLEAGITTDMLVREFARFGPLDKELTAIKPGAKFGFVKYRYRLHAETAKKELN 79
            A  GVE++GR++R GWAQ+NT+L+VG L+  I   +    F+R+G L  + T  K    FG VK++ R +AETAK ELN
Sbjct:  135 ALHGVEVSGRKIRTGWAQRNTTLFVGDLDNTIDATVYRTAFSRYGNLVDDETYFKVDKGFGMVKFKTRENAETAKVELN 213          
BLAST of mRNA_S-dermatodea_contig10844.572.1 vs. uniprot
Match: A0A7S2RB19_9STRA (Hypothetical protein n=4 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RB19_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.710e-10
Identity = 41/110 (37.27%), Postives = 59/110 (53.64%), Query Frame = 0
Query:    4 GVELAGRRVRVGWAQKNTSLYVGGLEAGITTDMLVREFARFGPLDKELTAIKPG-------------AKFGFVKYRYRLHAETAKKELNERPAFGGLCPALHIEWNSVES 100
            G E+AGRRVRVGWA KN++L V  L+ G++ + L+  FARFGPLD + + ++P              A     K+  R HAE+AK+ L+         P L ++W    S
Sbjct:  116 GREVAGRRVRVGWAMKNSTLVVKDLDPGLSEEDLLNAFARFGPLDLDQSGVRPAEPCSEEEEAGGSTALQAVFKFTQRTHAESAKQNLSGMMLASSSAP-LRVDWAGASS 224          
BLAST of mRNA_S-dermatodea_contig10844.572.1 vs. uniprot
Match: A0A7S3Z8S4_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z8S4_9EUKA)

HSP 1 Score: 71.6 bits (174), Expect = 2.930e-10
Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 0
Query:    1 ARQGVELAGRRVRVGWAQKNTSLYVGGLEAGITTDMLVREFARFGPLDKELTAIKPGAKFGFVKYRYRLHAETAKKELN 79
            A  GV ++GR++R GWAQ+NT+L+VG L++ +        FAR+G L  + T  K    FG VKY+ R +AETAK ELN
Sbjct:  168 ALHGVVVSGRKIRTGWAQRNTTLFVGDLDSFVDESEYRAAFARYGSLVLDETYFKVDKGFGMVKYKTRENAETAKMELN 246          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10844.572.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7FNP3_ECTSI1.580e-12266.08Poly(A) binding protein, cytoplasmic 4-like n=1 Ta... [more]
A0A6H5L4J2_9PHAE5.050e-10870.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TSQ6_9STRA4.210e-1627.42Tia1 cytotoxic granule-associated rna binding prot... [more]
A0A7S3DFR0_9EUKA7.190e-1642.27Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
A0A836CDW8_9STRA2.050e-1329.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
L8H825_ACACA8.600e-1343.82RNA recognition motif domain containing protein n=... [more]
A0A7S0TF52_9EUKA2.510e-1250.63Hypothetical protein (Fragment) n=1 Tax=Elphidium ... [more]
A0A7S0DL40_9EUKA2.040e-1046.84Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A7S2RB19_9STRA2.710e-1037.27Hypothetical protein n=4 Tax=Rhizochromulina marin... [more]
A0A7S3Z8S4_9EUKA2.930e-1046.84Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 22..92
e-value: 0.0025
score: 27.1
coord: 149..238
e-value: 0.45
score: 9.6
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 23..81
e-value: 1.4E-6
score: 28.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 21..86
score: 8.655
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 147..275
e-value: 1.2E-9
score: 40.5
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 10..96
e-value: 9.5E-10
score: 40.3
NoneNo IPR availablePANTHERPTHR23147:SF22SERINE AND ARGININE RICH SPLICING FACTOR 3coord: 23..134
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 23..134
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 164..272
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 17..88

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10844contigS-dermatodea_contig10844:1907..7586 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10844.572.1mRNA_S-dermatodea_contig10844.572.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig10844 1907..7586 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig10844.572.1 ID=prot_S-dermatodea_contig10844.572.1|Name=mRNA_S-dermatodea_contig10844.572.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=311bp
ARQGVELAGRRVRVGWAQKNTSLYVGGLEAGITTDMLVREFARFGPLDKE
LTAIKPGAKFGFVKYRYRLHAETAKKELNERPAFGGLCPALHIEWNSVES
GSRADGSETAASTDENTTDGGGADGSESASQHSGHMRHQSRGEGGSSNTV
HVQFEGEQSRVSAVNEAMIRKTFTQWEPLVDVVIPASRYNGVSPGPRQLP
RCWGFVHFPPTPDGEHAAKDAMQALNGTTIAEMKVHCTMNRTSGGSGNTW
RRQGGMGIAERGGKSRRHSSGGADDGRAMMHGQGFGGRPARSSMESPGAR
GGGGGGWGGNV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf