prot_S-dermatodea_contig107.478.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-dermatodea_contig107.478.1
Unique Name	prot_S-dermatodea_contig107.478.1
Type	polypeptide
Organism	Saccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length	327

Homology

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BLAST of mRNA_S-dermatodea_contig107.478.1 vs. uniprot
Match: D7FSS4_ECTSI (Poly(A)-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSS4_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 2.290e-45
Identity = 150/386 (38.86%), Postives = 178/386 (46.11%), Query Frame = 0

Query:    4 HPAP--GIVDDEGEAFARAVFGRFLRQATICRDIDDAIEHMHIVNDNSNTFEIRLGGEARVPVSRELILALASKKKELLYQCESALRASRVSVAVTGTAGAGSPLSPPQAVVFPPPTALAATGEGVTAASPLARQAETATPSP---------------------------------AGAAAGVEER----------------------APAATIKPEVGGRLCGEISSRAENELPLNALHSN---VVAVASTTPFVHEKSKVAARVSQCCWMFRIIPHSSCPSLDSPCIPRIPPPRIPLDSIERLAPVA--YVPTNNPPPAPSTRPRNGMRPTTVFVRKVDVKVDRDELIEHFASFGEVTGVSMNPTRGYAFVDFASHDCVVRAVR 327
            HPAP  G+VDD GEAFARAVF RFLRQATI RDIDD IEHMHIVND+S TF IRLGG+ARVPVSRELILALA+KKKELL  CES LR  R   ++ G  G G  ++   A     PT     G     +S L    +   PS                                  A  +A V                          PAA      G    G +S      L + A H     V A A   P V E S                                         + R+A  A  +VPT     A   R R+   PTT+FVRK+D+KVDR+++I+HF+ FG+V  VSMNP+RGYAFVD  SHD V+RAVR
Sbjct:    7 HPAPASGVVDDAGEAFARAVFCRFLRQATISRDIDDVIEHMHIVNDDSQTFAIRLGGDARVPVSRELILALAAKKKELLALCESKLRTPR---SIRG--GGGHTVTGANATAAGTPTGGGRPG----LSSSLQHYRQQGNPSTXXXXXXXXXXXXXXXXXXXXXXXXXXXMQSSAMAAGSASVXXXXXXXXXXXXXXXXXXXXXXLCSVPAAMGDSATG----GGVSPAVVPPLGVVARHQQGEGVAAAAGPDPMVVEGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----XXXXXVTRVAAAAPAFVPTAA---AAGWRQRDPAGPTTLFVRKIDMKVDREDVIKHFSIFGQVLSVSMNPSRGYAFVDLDSHDAVLRAVR 372

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BLAST of mRNA_S-dermatodea_contig107.478.1 vs. uniprot
Match: A0A6H5L5V4_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5V4_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.040e-16
Identity = 46/76 (60.53%), Postives = 59/76 (77.63%), Query Frame = 0

Query:  252 AYVPTNNPPPAPSTRPRNGMRPTTVFVRKVDVKVDRDELIEHFASFGEVTGVSMNPTRGYAFVDFASHDCVVRAVR 327
            A+VPT     A   R R+   PTT+FVRK+D+KVDR+++I+HF+SFG+V  VSMNP+RGYAFVD  SHD V+RAVR
Sbjct:  419 AFVPTAA---AAGWRQRDPAGPTTLFVRKIDMKVDREDVIKHFSSFGKVLSVSMNPSRGYAFVDLDSHDAVLRAVR 491

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BLAST of mRNA_S-dermatodea_contig107.478.1 vs. uniprot
Match: D7FJI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJI2_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 1.920e-13
Identity = 33/52 (63.46%), Postives = 47/52 (90.38%), Query Frame = 0

Query:  271 MRPTTVFVRKVDVKVDRDELIEHFASFGEVTGVSMNPTRGYAFVDFASHDCV 322
            M  T++FVRKVD+ +DRDE+I HF+++GEVTG+SMNPTRGYAF+D+ +++CV
Sbjct:  443 MPATSLFVRKVDMTIDRDEMIAHFSAYGEVTGISMNPTRGYAFIDYRTNECV 494

The following BLAST results are available for this feature:

BLAST of mRNA_S-dermatodea_contig107.478.1 vs. uniprot

BLAST of mRNA_S-dermatodea_contig107.478.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
D7FSS4_ECTSI	2.290e-45	38.86	Poly(A)-binding protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5L5V4_9PHAE	1.040e-16	60.53	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
D7FJI2_ECTSI	1.920e-13	63.46	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 254..327 e-value: 3.6E-12 score: 48.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 276..326 e-value: 4.9E-8 score: 32.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 274..327 score: 12.629
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 259..326

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-dermatodea_contig107	contig	S-dermatodea_contig107:2547..5612 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-dermatodea_contig107.478.1	mRNA_S-dermatodea_contig107.478.1	Saccorhiza dermatodea SderLu1190fm monoicous	mRNA	S-dermatodea_contig107 2547..7699 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-dermatodea_contig107.478.1 ID=prot_S-dermatodea_contig107.478.1|Name=mRNA_S-dermatodea_contig107.478.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=327bp
MAYHPAPGIVDDEGEAFARAVFGRFLRQATICRDIDDAIEHMHIVNDNSN
TFEIRLGGEARVPVSRELILALASKKKELLYQCESALRASRVSVAVTGTA
GAGSPLSPPQAVVFPPPTALAATGEGVTAASPLARQAETATPSPAGAAAG
VEERAPAATIKPEVGGRLCGEISSRAENELPLNALHSNVVAVASTTPFVH
EKSKVAARVSQCCWMFRIIPHSSCPSLDSPCIPRIPPPRIPLDSIERLAP
VAYVPTNNPPPAPSTRPRNGMRPTTVFVRKVDVKVDRDELIEHFASFGEV
TGVSMNPTRGYAFVDFASHDCVVRAVR

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom
IPR035979	RBD_domain_sf