mRNA_S-dermatodea_contig107.478.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig107.478.1
Unique NamemRNA_S-dermatodea_contig107.478.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig107.478.1 vs. uniprot
Match: D7FSS4_ECTSI (Poly(A)-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSS4_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 1.240e-44
Identity = 150/386 (38.86%), Postives = 178/386 (46.11%), Query Frame = 2
Query:  161 HPAP--GIVDDEGEAFARAVFGRFLRQATICRDIDDAIEHMHIVNDNSNTFEIRLGGEARVPVSRELILALASKKKELLYQCESALRASRVSVAVTGTAGAGSPLSPPQAVVFPPPTALAATGEGVTAASPLARQAETATPSP---------------------------------AGAAAGVEER----------------------APAATIKPEVGGRLCGEISSRAENELPLNALHSN---VVAVASTTPFVHEKSKVAARVSQCCWMFRIIPHSSCPSLDSPCIPRIPPPRIPLDSIERLAPVA--YVPTNNPPPAPSTRPRNGMRPTTVFVRKVDVKVDRDELIEHFASFGEVTGVSMNPTRGYAFVDFASHDCVVRAVR 1132
            HPAP  G+VDD GEAFARAVF RFLRQATI RDIDD IEHMHIVND+S TF IRLGG+ARVPVSRELILALA+KKKELL  CES LR  R   ++ G  G G  ++   A     PT     G     +S L    +   PS                                  A  +A V                          PAA      G    G +S      L + A H     V A A   P V E S                                         + R+A  A  +VPT     A   R R+   PTT+FVRK+D+KVDR+++I+HF+ FG+V  VSMNP+RGYAFVD  SHD V+RAVR
Sbjct:    7 HPAPASGVVDDAGEAFARAVFCRFLRQATISRDIDDVIEHMHIVNDDSQTFAIRLGGDARVPVSRELILALAAKKKELLALCESKLRTPR---SIRG--GGGHTVTGANATAAGTPTGGGRPG----LSSSLQHYRQQGNPSTXXXXXXXXXXXXXXXXXXXXXXXXXXXMQSSAMAAGSASVXXXXXXXXXXXXXXXXXXXXXXLCSVPAAMGDSATG----GGVSPAVVPPLGVVARHQQGEGVAAAAGPDPMVVEGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----XXXXXVTRVAAAAPAFVPTAA---AAGWRQRDPAGPTTLFVRKIDMKVDREDVIKHFSIFGQVLSVSMNPSRGYAFVDLDSHDAVLRAVR 372          
BLAST of mRNA_S-dermatodea_contig107.478.1 vs. uniprot
Match: A0A6H5L5V4_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5V4_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 2.170e-16
Identity = 46/76 (60.53%), Postives = 59/76 (77.63%), Query Frame = 2
Query:  905 AYVPTNNPPPAPSTRPRNGMRPTTVFVRKVDVKVDRDELIEHFASFGEVTGVSMNPTRGYAFVDFASHDCVVRAVR 1132
            A+VPT     A   R R+   PTT+FVRK+D+KVDR+++I+HF+SFG+V  VSMNP+RGYAFVD  SHD V+RAVR
Sbjct:  419 AFVPTAA---AAGWRQRDPAGPTTLFVRKIDMKVDREDVIKHFSSFGKVLSVSMNPSRGYAFVDLDSHDAVLRAVR 491          
BLAST of mRNA_S-dermatodea_contig107.478.1 vs. uniprot
Match: D7FJI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJI2_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 3.630e-13
Identity = 33/52 (63.46%), Postives = 47/52 (90.38%), Query Frame = 2
Query:  962 MRPTTVFVRKVDVKVDRDELIEHFASFGEVTGVSMNPTRGYAFVDFASHDCV 1117
            M  T++FVRKVD+ +DRDE+I HF+++GEVTG+SMNPTRGYAF+D+ +++CV
Sbjct:  443 MPATSLFVRKVDMTIDRDEMIAHFSAYGEVTGISMNPTRGYAFIDYRTNECV 494          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig107.478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FSS4_ECTSI1.240e-4438.86Poly(A)-binding protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5V4_9PHAE2.170e-1660.53RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FJI2_ECTSI3.630e-1363.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig107contigS-dermatodea_contig107:2547..7699 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue7.3e-13
Seed eggNOG ortholog2880.D7FJI2
Preferred nameG3BP2
KEGG koko:K14050,ko:K14328,ko:K17265,ko:K19718
KEGG Pathwayko03013,ko03015,ko04139,map03013,map03015,map04139
KEGG ModuleM00430
GOsGO:0000003,GO:0000375,GO:0000377,GO:0000398,GO:0000932,GO:0001654,GO:0001736,GO:0001738,GO:0001745,GO:0001751,GO:0001752,GO:0001754,GO:0002009,GO:0002064,GO:0002065,GO:0002066,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003678,GO:0003723,GO:0003724,GO:0003729,GO:0003824,GO:0004003,GO:0004004,GO:0004386,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006396,GO:0006397,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006914,GO:0006996,GO:0007154,GO:0007163,GO:0007164,GO:0007165,GO:0007253,GO:0007264,GO:0007265,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007389,GO:0007399,GO:0007423,GO:0008026,GO:0008069,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009056,GO:0009653,GO:0009798,GO:0009887,GO:0009888,GO:0009889,GO:0009893,GO:0009950,GO:0009953,GO:0009966,GO:0009968,GO:0009987,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010604,GO:0010628,GO:0010646,GO:0010648,GO:0016043,GO:0016070,GO:0016071,GO:0016236,GO:0016318,GO:0016333,GO:0016334,GO:0016462,GO:0016579,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023052,GO:0023057,GO:0030111,GO:0030154,GO:0030159,GO:0030178,GO:0030182,GO:0030707,GO:0030855,GO:0031323,GO:0031326,GO:0032088,GO:0032386,GO:0032392,GO:0032501,GO:0032502,GO:0032504,GO:0032508,GO:0032879,GO:0032947,GO:0032991,GO:0033036,GO:0034063,GO:0034517,GO:0034622,GO:0034641,GO:0035556,GO:0035770,GO:0035973,GO:0036211,GO:0036464,GO:0040008,GO:0042067,GO:0042623,GO:0042706,GO:0042994,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043433,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0044877,GO:0045165,GO:0045185,GO:0045570,GO:0045571,GO:0045926,GO:0046483,GO:0046530,GO:0046552,GO:0046620,GO:0046621,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048592,GO:0048609,GO:0048638,GO:0048640,GO:0048663,GO:0048699,GO:0048729,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051090,GO:0051093,GO:0051171,GO:0051179,GO:0051220,GO:0051235,GO:0051239,GO:0051241,GO:0051252,GO:0051276,GO:0051704,GO:0051716,GO:0060255,GO:0060341,GO:0060429,GO:0060627,GO:0060628,GO:0060828,GO:0061912,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070035,GO:0070646,GO:0070647,GO:0070925,GO:0071103,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090090,GO:0090304,GO:0090596,GO:0097159,GO:0140097,GO:0140098,GO:1901360,GO:1901363,GO:1901564,GO:1903506,GO:1905538,GO:1990861,GO:1990904,GO:2000026,GO:2000112,GO:2000156,GO:2001141
EggNOG free text desc.ras GTPase-activating protein-binding protein
EggNOG OGsKOG0116@1,KOG0116@2759
EC2.5.1.60,3.6.4.12,3.6.4.13
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01006,ko03019,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNucleotide-binding alpha-beta plait domain
Ec32 orthologEc-09_001460.1
Exons6
Model size1132
Cds size981
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924169.3990364-CDS-S-dermatodea_contig107:2546..26161622924169.3990364-CDS-S-dermatodea_contig107:2546..2616Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig107 2547..2616 -
1694079065.1925576-CDS-S-dermatodea_contig107:2546..26161694079065.1925576-CDS-S-dermatodea_contig107:2546..2616Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig107 2547..2616 -
1622924169.4101982-CDS-S-dermatodea_contig107:3089..31601622924169.4101982-CDS-S-dermatodea_contig107:3089..3160Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig107 3090..3160 -
1694079065.2053447-CDS-S-dermatodea_contig107:3089..31601694079065.2053447-CDS-S-dermatodea_contig107:3089..3160Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig107 3090..3160 -
1622924169.4208872-CDS-S-dermatodea_contig107:3533..36261622924169.4208872-CDS-S-dermatodea_contig107:3533..3626Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig107 3534..3626 -
1694079065.213848-CDS-S-dermatodea_contig107:3533..36261694079065.213848-CDS-S-dermatodea_contig107:3533..3626Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig107 3534..3626 -
1622924169.4325297-CDS-S-dermatodea_contig107:3810..40541622924169.4325297-CDS-S-dermatodea_contig107:3810..4054Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig107 3811..4054 -
1694079065.2242985-CDS-S-dermatodea_contig107:3810..40541694079065.2242985-CDS-S-dermatodea_contig107:3810..4054Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig107 3811..4054 -
1622924169.4468122-CDS-S-dermatodea_contig107:5109..56121622924169.4468122-CDS-S-dermatodea_contig107:5109..5612Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig107 5110..5612 -
1694079065.2346728-CDS-S-dermatodea_contig107:5109..56121694079065.2346728-CDS-S-dermatodea_contig107:5109..5612Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig107 5110..5612 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924169.4639504-UTR-S-dermatodea_contig107:5612..57201622924169.4639504-UTR-S-dermatodea_contig107:5612..5720Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig107 5613..5720 -
1694079065.2470098-UTR-S-dermatodea_contig107:5612..57201694079065.2470098-UTR-S-dermatodea_contig107:5612..5720Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig107 5613..5720 -
1622924169.4727888-UTR-S-dermatodea_contig107:7656..76991622924169.4727888-UTR-S-dermatodea_contig107:7656..7699Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig107 7657..7699 -
1694079065.2543035-UTR-S-dermatodea_contig107:7656..76991694079065.2543035-UTR-S-dermatodea_contig107:7656..7699Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig107 7657..7699 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig107.478.1prot_S-dermatodea_contig107.478.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig107 2547..5612 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig107.478.1

>prot_S-dermatodea_contig107.478.1 ID=prot_S-dermatodea_contig107.478.1|Name=mRNA_S-dermatodea_contig107.478.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=327bp
MAYHPAPGIVDDEGEAFARAVFGRFLRQATICRDIDDAIEHMHIVNDNSN
TFEIRLGGEARVPVSRELILALASKKKELLYQCESALRASRVSVAVTGTA
GAGSPLSPPQAVVFPPPTALAATGEGVTAASPLARQAETATPSPAGAAAG
VEERAPAATIKPEVGGRLCGEISSRAENELPLNALHSNVVAVASTTPFVH
EKSKVAARVSQCCWMFRIIPHSSCPSLDSPCIPRIPPPRIPLDSIERLAP
VAYVPTNNPPPAPSTRPRNGMRPTTVFVRKVDVKVDRDELIEHFASFGEV
TGVSMNPTRGYAFVDFASHDCVVRAVR
back to top

mRNA from alignment at S-dermatodea_contig107:2547..7699-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig107.478.1 ID=mRNA_S-dermatodea_contig107.478.1|Name=mRNA_S-dermatodea_contig107.478.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5153bp|location=Sequence derived from alignment at S-dermatodea_contig107:2547..7699- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGCCACAGCAGTAGCTCGGCCTCAGCATACGCTCGACTGTCAGGTGAGAG AGGAGCCTGCGAGCTTGCTCTGTCGTTGTATGTCCGTGCGTGCTCTTGTT GAAATGCGGAATGTCACACACACGGAGGTACTGTAAAGTAAAAGCGGATA TTGAACCGCGTTTTGCGGAAATGCTGAATGGCAAAAAATGCGTTTGGACC GCAACACATGCATGGGATGCAACCAGCGTCGCTAGCGTCGCTAGGTGACA AAATGCTGCGAGCATGCCCTGCGGGGTGAAATGCATACCTTCCTCGAAGG GCCATTCGAGAGAGAAGCTTCCGCTAGGGCCACCGCGTGTCGCGCCCTGT TGTTGGGCGAGGGGGTTTGGCGTTTTGATTCAGATCAGCCGCGGTTGATT TGTGTTACCTGTGTGAGAAGGCCACGAGATACTGAGCAGGTGACGGAAAT ATTACATGTTGAGTACCACATGTACAGCAGTATCTTGCAAGCAGTAGCAG TACTTGCACAGCAGTATCACTCTGTCAGGCATTGTATGCTGCATACTGTC TACCAGTATCATACAGCAGTACATGTATTACGATGTCGTATCATACGCAC TCATAGTTTCAGTAATTTCGGGGGACGTGCCTGAGAGCCGTGTCGAGGAG GGATTCGAACCAGCCTTGAGTCGGAGATAATGCAAGATGCTGGCATTTGG AATTGCACTGTTAATATCATATATAGGCTTCACAAAACCCGCGACAGGAA TTCAGGTACCATTCGAATTACTGGTACTACAGCAATAGGCTCTATAGCTG CCAGCAATGCATACAAAGTAAGTATCGCACTTGGGGAGTCGCCTGGACCA GTTATACTAATTATATTTTCTTTCGGGCGGACGTGAAATTATCTCAGTTT GTGTACAACAAAGTCCACCCGGGTTATGTCCTGTCCCGATGAGTTATTGT ATGGATTGTATCATACACTTTCTGTGTTATGTTTCTTTATAAAAAAAAAG TCATGTTGTCGTAACCTACTTCAGCAAGTAAGTGGCTGAAGGACTCACTG CATCTATGGGGAAAGGCACGAATGGGTATCTTCTACCGGGACCAGGATAA TCCGTCCTTCACTTGTGCAGGAATCTGCGTGGTGTACAAGAGGTTGGATC CTGCAGAAGCTGCGGCATTCGTGCTATAAGCACTTGTGAAGTTAGGTTCA CTTGGCGTCACCCGTGTGGCACGTGGCACTATCGTGTAGCTCTACTGCTG CGAATAACAATGCTCTCCTAAACGACTGAAACGTCCCCCAACGCCAGTAG AAAGTCCCGCTTCCCTTGCTCACCGTTATTTCTCAAATCACGTCATAGTC ATGGGGTTTCTAGTGACTCCTCTTAAACCGCGCCTACTACGCTAACCGGC GTTCTGAAGGGTCGGCTAATACCTGATACTTGTACCTAATACCGAACCGT AGATAAGTAAATTCAACCAAGGGGTTCCGACGGAGAGAACAGCGGATTTT CCTGGCCATGGGGGATGAACACGTACGAGTATGGGTGCAGGTACAAGAGC ACTCTGGGGCTCTGCTGCGGGGTACAGTTGAACCCACGCTGCGTCCGTAC AATCAAGTGTGTGAGCCCGTGGCTGTCTCAGTCAAAACTATTATGTAACT TTATCCAATGGTATTATAGTTATATTTTATTGATCCAACGGCAAACTGTT GTCCAGCGCAGTCGGCTCCACATTTGCGTATGGGCTGCACACCGACCAGG AAATGTTCCTCGCCGCTGCCTACCAGCAGAAGTACGACCGCCAGTGTGAT TTCAATATCGCGAGTGTACACTGAAAAATCGTCGGTGACTGCTGTATCTT CTTCCCGTCAATGTATTCGCGACGTCCGATACGAAACAAGGTGAATCGTG GTGGCCATCCATCAATCGCCGGTGATACCGCAACTCTTACCAACGAACGC TTTTCCCTCTTCCGATATCTTATCACAAGTCGCCAACAACGCCTGGCATC AACGAGGCACACAACCCAGCGGAAGGACCTTCAGCGGACGCGACATCGCG GCCCTGCCTGCAACCGTAACACTTGCCGCGAGGCGCCATGGCGTACCACC CAGCGCCGGGCATCGTTGATGACGAGGGCGAAGCCTTCGCCCGAGCCGTG TTCGGCCGCTTCCTGCGGCAGGCGACCATCTGCCGAGATATCGACGATGC AATCGAACACATGCACATCGTCAACGACAACTCGAACACCTTCGAAATCC GTCTCGGTGGGGAGGCCCGGGTACCGGTCAGCCGAGAGCTCATTCTCGCG CTTGCGTCGAAAAAGAAGGAGCTTCTCTACCAGTGCGAGTCCGCTCTCCG CGCCTCGAGGGTTAGCGTGGCGGTGACCGGCACGGCTGGGGCGGGATCCC CCTTGAGTCCCCCGCAAGCTGTCGTTTTCCCGCCGCCGACGGCCCTTGCA GCTACGGGAGAGGGCGTAACGGCGGCCTCGCCTCTTGCGCGACAGGCTGA GACAGCGACCCCATCACCAGCAGGAGCAGCAGCTGGTGTTGAAGAGCGCG CGCCAGCGGCGACGATCAAGCCGGAGGTGGGTGGACGTTTGTTCCTGTTC CTCGAAAGGCTCCCCTTTGCATTCCTCGGGGCTCGGTGTGCATGCGTGTG AGCTTGGCTCTGAAGGTCCGGTCTGTACGCTGCTATCTGGGTGGGATGCT TACGCATAGCTCCGAAAACCGCTGAGTGCGGGAAGCGTTCGCGTGGCGTG TGAAGACTAACCCCTTTGGGAGACTGCGTCCGTTGTCGTAGCCATCCGCC CCGCATTTTTATTTCACACATGGAAAAGGTACAGTACCCGAACGGTTGCC GTTCTTCGCCGTAATGGTGGGGGAAGAGTAATGATAAACCTGCCAAAGCT GAACATGGACATGAACCGTACGGTGCACTTGTTGTGCGTGCATACACCGG TACTGGCGTTAATCGGCGCAAACGCACTCAATCCCACAAGGGCTGAAATA GTGTATGACCGGTGGCGCGCCAATTGTGAGGCCTAATATTTTCTTGTGGC GATGCTGGTGTTGATCGGCGCGCAGTCCGTGTGGCGTGTACGGGTCTATG TTCTAGTTATTATCTGACGGATTTCGCCCTTATATCCGCGGGAGTAAATG ACACCGTAGCTTGACAAAACCACCGATTATTGAGCCCTAACACTTGGTAC CGAAAAGCGAGGGAGAGCGATGTCGAACGAAGAGTCTGACTCGATCTGCG TCCACAACGTGTATTCGTTCGCGTGAGGTATGGTGGCATATCGATGTATG AGAGATCGAGAGACTAAAAACAGTGGAAAGGGTCGAAGAAAGTGAAACAC CACACGCCGATCAACGATCTCCGAGCTGGGATTCAAAGTACCAGAGAGGT GAAGCGTGGTGTCGTGGAAGAGGTTGATTTGACAAACTCCCTCACAAGCT ATTGGTGACAGCTAGGTGCATGCTTGGTAAAGCAGACAGCTAGGCAGCTG CTCACAGAGCGTTTCCGGTCACGTGTCAATACATTGACTTTTATCATTAT GAAAGTGATTACGGTGGGAATATGTGTTTCTTCCAATAAACCGTAATAAT AGGTCTCAAAGTAGACGTGAGAGAAATTGTGAACAGGGTTTCCAGGTGCG GGGAGATTAGTTCCCGGGCGGAGAATGAGCTTCCTCTCAACGCCTTGCAT TCAAACGTTGTAGCGGTAGCAAGCACCACCCCCTTCGTTCACGAAAAGTC TAAAGTAGCTGCACGCGTATCTCAGTGCTGCTGGATGTTTCGCATCATTC CCCACTCGAGTTGCCCCTCACTCGACTCGCCTTGCATTCCACGTATCCCA CCCCCACGCATCCCACTCGACTCGATAGAGCGACTCGCAGTAAGATTACC GAAAGCAAGCTAGTTTATGCAATATCTCCACTCCCGCATCCTCGGCCCCG ACAAACATGCTAAACTTCCGGCTATCCTAGGGCATGTGTTGTTGCGTCTA AATATTGTTAATCGCCTGTTTTGCATACTCGCGGCCCCGTCCCAATCGTG CGCAGCCAGTGCCTATACCACAGCCGGTGGCGTACGTCCCAACGAACAAC CCACCGCCCGCTCCGTCTACGCGGCCGAGGAACGGTATGAGGCCGACGAC CGTTTTCGTCAGAAAGGTACGTCGTTTTGACAAGCAACGTTCACCTGGGG TCTTGTCGGTTTACTGACCTCCAGGAGAAATCGCGACGTTTTTCGAAAAC GCTCAGGCATGCTCCGTCGGTATGCCATGTCCCACACTCGGAACGGGCTG TGCGCTGAAAATTGGCGAAATGCTGGCCCCTTCCATCCATGGAGTAGACT CGCCTTGTGGAATGAATCGAAATTTGAAAGTTGAACTCTAGGGCCGTTGG ACTGCGCACACCGCAGAGGCATTGCGCTGCAAAAATGCAAAAATGTGTCA ATCGCACCTTTATCTGTCACGCGAGGTGGCCAATAGCGAGAAAGGGGTGG CTGGGCTCATGTCGGCACCCGCATGTTTGGTTGCTGCAGGTGGACGTGAA GGTGGATAGGGACGAGCTGATCGAGCACTTCGCATCTTTTGGGGAAGTCA CCGGTGTTAGGTAAGCCATACTCGTACTACAGAGGTACACAGGAGTATTA GTATAACAGCAATCAGGATCAAATGTGCCAGACAGTACGCCCATCATGAT GAACCAGAAATCGTTATGGTCTGGCCTTAGGAACACCTGCCATCTTCCGG CCGGCCTGAAACGTCAATAAAAAAAACAAAAAACAAAAAAAGTGTTGGGA CCAACGTTAAAAAACAACAAGCCTTGAATATTGTACGCTATTCAGCTGAA ATTTGGTCCTGATTACTGCGCACCTCCGTTATAGTGTGGTGTGGTGTGCC TCGCGTAACCAGCGCTGCCAACTGCGTCTCTGGCATTGACTTTACATCGC GGTTTCAGTCCTGGGGCAATCGGTGCGAGGGAGACATTTTCTTGGCCCGC ACATCTGGTGGTTTCCTGTTACGATGCTAGGCAAAGAGAATCACTATTTT CCGTCCCGACCCTTCCGGTTGCTCACTCTCCAGCATGAACCCTACGCGGG GCTACGCCTTCGTCGACTTCGCTTCGCACGACTGCGTAGTCCGGGCTGTC AGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig107:2547..7699-

>mRNA_S-dermatodea_contig107.478.1 ID=mRNA_S-dermatodea_contig107.478.1|Name=mRNA_S-dermatodea_contig107.478.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1962bp|location=Sequence derived from alignment at S-dermatodea_contig107:2547..7699- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGTACCACCCAGCGCCGGGCATCGTTGATGACGAGGGCGAAGCCTT
CGCCCGAGCCGTGTTCGGCCGCTTCCTGCGGCAGGCGACCATCTGCCGAG
ATATCGACGATGCAATCGAACACATGCACATCGTCAACGACAACTCGAAC
ACCTTCGAAATCCGTCTCGGTGGGGAGGCCCGGGTACCGGTCAGCCGAGA
GCTCATTCTCGCGCTTGCGTCGAAAAAGAAGGAGCTTCTCTACCAGTGCG
AGTCCGCTCTCCGCGCCTCGAGGGTTAGCGTGGCGGTGACCGGCACGGCT
GGGGCGGGATCCCCCTTGAGTCCCCCGCAAGCTGTCGTTTTCCCGCCGCC
GACGGCCCTTGCAGCTACGGGAGAGGGCGTAACGGCGGCCTCGCCTCTTG
CGCGACAGGCTGAGACAGCGACCCCATCACCAGCAGGAGCAGCAGCTGGT
GTTGAAGAGCGCGCGCCAGCGGCGACGATCAAGCCGGAGGTGGGTGGACG
TTTATGGCGTACCACCCAGCGCCGGGCATCGTTGATGACGAGGGCGAAGC
CTTCGCCCGAGCCGTGTTCGGCCGCTTCCTGCGGCAGGCGACCATCTGCC
GAGATATCGACGATGCAATCGAACACATGCACATCGTCAACGACAACTCG
AACACCTTCGAAATCCGTCTCGGTGGGGAGGCCCGGGTACCGGTCAGCCG
AGAGCTCATTCTCGCGCTTGCGTCGAAAAAGAAGGAGCTTCTCTACCAGT
GCGAGTCCGCTCTCCGCGCCTCGAGGGTTAGCGTGGCGGTGACCGGCACG
GCTGGGGCGGGATCCCCCTTGAGTCCCCCGCAAGCTGTCGTTTTCCCGCC
GCCGACGGCCCTTGCAGCTACGGGAGAGGGCGTAACGGCGGCCTCGCCTC
TTGCGCGACAGGCTGAGACAGCGACCCCATCACCAGCAGGAGCAGCAGCT
GGTGTTGAAGAGCGCGCGCCAGCGGCGACGATCAAGCCGGAGGTGGGTGG
ACGTTTGTGCGGGGAGATTAGTTCCCGGGCGGAGAATGAGCTTCCTCTCA
ACGCCTTGCATTCAAACGTTGTAGCGGTAGCAAGCACCACCCCCTTCGTT
CACGAAAAGTCTAAAGTAGCTGCACGCGTATCTCAGTGCTGCTGGATGTT
TCGCATCATTCCCCACTCGAGTTGCCCCTCACTCGACTCGCCTTGCATTC
CACGTATCCCACCCCCACGCATCCCACTCGACTCGATAGAGCGACTCGCA
GTGCGGGGAGATTAGTTCCCGGGCGGAGAATGAGCTTCCTCTCAACGCCT
TGCATTCAAACGTTGTAGCGGTAGCAAGCACCACCCCCTTCGTTCACGAA
AAGTCTAAAGTAGCTGCACGCGTATCTCAGTGCTGCTGGATGTTTCGCAT
CATTCCCCACTCGAGTTGCCCCTCACTCGACTCGCCTTGCATTCCACGTA
TCCCACCCCCACGCATCCCACTCGACTCGATAGAGCGACTCGCACCGGTG
GCGTACGTCCCAACGAACAACCCACCGCCCGCTCCGTCTACGCGGCCGAG
GAACGGTATGAGGCCGACGACCGTTTTCGTCAGAAAGCCGGTGGCGTACG
TCCCAACGAACAACCCACCGCCCGCTCCGTCTACGCGGCCGAGGAACGGT
ATGAGGCCGACGACCGTTTTCGTCAGAAAGGTGGACGTGAAGGTGGATAG
GGACGAGCTGATCGAGCACTTCGCATCTTTTGGGGAAGTCACCGGTGTTA
GGTGGACGTGAAGGTGGATAGGGACGAGCTGATCGAGCACTTCGCATCTT
TTGGGGAAGTCACCGGTGTTAGCATGAACCCTACGCGGGGCTACGCCTTC
GTCGACTTCGCTTCGCACGACTGCGTAGTCCGGGCTGTCAGGCATGAACC
CTACGCGGGGCTACGCCTTCGTCGACTTCGCTTCGCACGACTGCGTAGTC
CGGGCTGTCAGG
back to top