prot_S-dermatodea_contig10681.474.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-dermatodea_contig10681.474.1
Unique Name	prot_S-dermatodea_contig10681.474.1
Type	polypeptide
Organism	Saccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length	491

Homology

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BLAST of mRNA_S-dermatodea_contig10681.474.1 vs. uniprot
Match: D8LQ05_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ05_ECTSI)

HSP 1 Score: 248 bits (632), Expect = 1.310e-72
Identity = 216/495 (43.64%), Postives = 253/495 (51.11%), Query Frame = 0

Query:   34 ASAPRMGMLS--GQSPPSATVRGATRWDNHLDLARCAHRQRRWPQVRELCSRVIICADDWTAVEQAHLRLALAEQNDKRVDAARRAFQHGTAACPSSDTLFMAWALMESKLHN-ARSRKVARALLRRAVALNPSRHRGVLKWRVFLDWKEASEAA--------------------VEAVRSALSNGQTVITISAEVSATVASAAPASRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSPRPQPGGIRESPPARQASPPHQELAAELERTGRGLVGGFDGGGRELSGTWRLVFTTCTTCNRILTRAGSEVYQRLTPPIVELAPRAG-EPPVPFRCEVLLRPASNARNADPGNT---------------------KPSATDFFRGWAEIKRRDRGRVS--LRQQVAPR-ASSRASGGAGSLSGARGMRRAA--TPPPAVFGALGHVVRGGAGLEKLVTQDVTYVGRGLRIGRTASGEV 478
            A+AP  G     G+S  S   +  TRWD  L+ AR AHR + W +V+  CSRVI  ADDW AVEQAHLRLALA Q    V   RRAFQ G   CPSSDTL +AWALMESK+ N A SR+ A AL+RRA+ALNP+++R VL W VF      +EAA                            + G+ +   +A    T A       +                          XXXXXXXXXXXXXXXXXXX PS R                   QELA ELER G G   G     R LSGTWRLVFTT   CNR L+R G+EVYQRLTPPI+ + PR   + P PFRCEVLLRPA+ A  A  G T                     K +   FFRGWA+    D+ R    L+Q VA R A                ++RA   TPPPAVF ALG V     GLE+L TQ+VTYVG+ LRIGRT  G+V
Sbjct:   38 AAAPSTGASPCFGRSSLSPRSKPLTRWDAQLERARSAHRVKDWTEVQHWCSRVIDLADDWNAVEQAHLRLALAAQKSSGVAGGRRAFQQGIRDCPSSDTLLVAWALMESKIKNSAHSRRRAWALIRRAIALNPNKNRRVLSWSVFAADLALAEAAGXXXXXXXXXXXXXXXXXXXXXLPEPTAAGGKGIGGAAAGGVRTRALEREEETILATKLLDLCHSNKGFQEAPEVPPAATXXXXXXXXXXXXXXXXXXXXPSER------------------FQELAGELERKGGGAAAGV----RALSGTWRLVFTTSADCNRYLSRTGNEVYQRLTPPIMAIKPRPSCKQPAPFRCEVLLRPAA-ATTATGGGTADASYGTRPLSPPSHGTKAAPKATVAYFFRGWADKSPPDQQREGCLLKQHVAARSAXXXXXXXXXXXXXXXSLKRAPSPTPPPAVFSALGLVAARCKGLERLATQEVTYVGKQLRIGRTTEGDV 509

The following BLAST results are available for this feature:

BLAST of mRNA_S-dermatodea_contig10681.474.1 vs. uniprot

BLAST of mRNA_S-dermatodea_contig10681.474.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LQ05_ECTSI	1.310e-72	43.64	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003107	HAT (Half-A-TPR) repeat	SMART	SM00386	hat_new_1	coord: 146..181 e-value: 55.0 score: 10.0 coord: 109..141 e-value: 2.0 score: 17.4
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10		coord: 52..205 e-value: 7.8E-10 score: 40.4
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 61..195
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 24..29
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..29
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 10..23
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..9
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 30..490
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..29 score: 0.88

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-dermatodea_contig10681	contig	S-dermatodea_contig10681:4140..7508 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-dermatodea_contig10681.474.1	mRNA_S-dermatodea_contig10681.474.1	Saccorhiza dermatodea SderLu1190fm monoicous	mRNA	S-dermatodea_contig10681 3190..7581 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-dermatodea_contig10681.474.1 ID=prot_S-dermatodea_contig10681.474.1|Name=mRNA_S-dermatodea_contig10681.474.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=491bp
MMIAALPRSLASTMVPLLLLMLLQGTSEALRVVASAPRMGMLSGQSPPSA
TVRGATRWDNHLDLARCAHRQRRWPQVRELCSRVIICADDWTAVEQAHLR
LALAEQNDKRVDAARRAFQHGTAACPSSDTLFMAWALMESKLHNARSRKV
ARALLRRAVALNPSRHRGVLKWRVFLDWKEASEAAVEAVRSALSNGQTVI
TISAEVSATVASAAPASRVAEGRGGNVPCSSTAASATTAGEPRAEERSHG
RGGRPTANGNAAVAAPSPRPQPGGIRESPPARQASPPHQELAAELERTGR
GLVGGFDGGGRELSGTWRLVFTTCTTCNRILTRAGSEVYQRLTPPIVELA
PRAGEPPVPFRCEVLLRPASNARNADPGNTKPSATDFFRGWAEIKRRDRG
RVSLRQQVAPRASSRASGGAGSLSGARGMRRAATPPPAVFGALGHVVRGG
AGLEKLVTQDVTYVGRGLRIGRTASGEVYVYERCGWPEDA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003107	HAT
IPR011990	TPR-like_helical_dom_sf