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Homology
BLAST of mRNA_S-dermatodea_contig10681.474.1 vs. uniprot
Match: D8LQ05_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ05_ECTSI) HSP 1 Score: 248 bits (632), Expect = 1.970e-69 Identity = 216/495 (43.64%), Postives = 253/495 (51.11%), Query Frame = 2
Query: 173 ASAPRMGMLS--GQSPPSATVRGATRWDNHLDLARCAHRQRRWPQVRELCSRVIICADDWTAVEQAHLRLALAEQNDKRVDAARRAFQHGTAACPSSDTLFMAWALMESKLHN-ARSRKVARALLRRAVALNPSRHRGVLKWRVFLDWKEASEAA--------------------VEAVRSALSNGQTVITISAEVSATVASAAPASRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSPRPQPGGIRESPPARQASPPHQELAAELERTGRGLVGGFDGGGRELSGTWRLVFTTCTTCNRILTRAGSEVYQRLTPPIVELAPRAG-EPPVPFRCEVLLRPASNARNADPGNT---------------------KPSATDFFRGWAEIKRRDRGRVS--LRQQVAPR-ASSRASGGAGSLSGARGMRRAA--TPPPAVFGALGHVVRGGAGLEKLVTQDVTYVGRGLRIGRTASGEV 1507
A+AP G G+S S + TRWD L+ AR AHR + W +V+ CSRVI ADDW AVEQAHLRLALA Q V RRAFQ G CPSSDTL +AWALMESK+ N A SR+ A AL+RRA+ALNP+++R VL W VF +EAA + G+ + +A T A + XXXXXXXXXXXXXXXXXXX PS R QELA ELER G G G R LSGTWRLVFTT CNR L+R G+EVYQRLTPPI+ + PR + P PFRCEVLLRPA+ A A G T K + FFRGWA+ D+ R L+Q VA R A ++RA TPPPAVF ALG V GLE+L TQ+VTYVG+ LRIGRT G+V
Sbjct: 38 AAAPSTGASPCFGRSSLSPRSKPLTRWDAQLERARSAHRVKDWTEVQHWCSRVIDLADDWNAVEQAHLRLALAAQKSSGVAGGRRAFQQGIRDCPSSDTLLVAWALMESKIKNSAHSRRRAWALIRRAIALNPNKNRRVLSWSVFAADLALAEAAGXXXXXXXXXXXXXXXXXXXXXLPEPTAAGGKGIGGAAAGGVRTRALEREEETILATKLLDLCHSNKGFQEAPEVPPAATXXXXXXXXXXXXXXXXXXXXPSER------------------FQELAGELERKGGGAAAGV----RALSGTWRLVFTTSADCNRYLSRTGNEVYQRLTPPIMAIKPRPSCKQPAPFRCEVLLRPAA-ATTATGGGTADASYGTRPLSPPSHGTKAAPKATVAYFFRGWADKSPPDQQREGCLLKQHVAARSAXXXXXXXXXXXXXXXSLKRAPSPTPPPAVFSALGLVAARCKGLERLATQEVTYVGKQLRIGRTTEGDV 509
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal peptide |
| Exons | 4 |
| Model size | 2496 |
| Cds size | 1473 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig10681.474.1 >prot_S-dermatodea_contig10681.474.1 ID=prot_S-dermatodea_contig10681.474.1|Name=mRNA_S-dermatodea_contig10681.474.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=491bp
MMIAALPRSLASTMVPLLLLMLLQGTSEALRVVASAPRMGMLSGQSPPSA
TVRGATRWDNHLDLARCAHRQRRWPQVRELCSRVIICADDWTAVEQAHLR
LALAEQNDKRVDAARRAFQHGTAACPSSDTLFMAWALMESKLHNARSRKV
ARALLRRAVALNPSRHRGVLKWRVFLDWKEASEAAVEAVRSALSNGQTVI
TISAEVSATVASAAPASRVAEGRGGNVPCSSTAASATTAGEPRAEERSHG
RGGRPTANGNAAVAAPSPRPQPGGIRESPPARQASPPHQELAAELERTGR
GLVGGFDGGGRELSGTWRLVFTTCTTCNRILTRAGSEVYQRLTPPIVELA
PRAGEPPVPFRCEVLLRPASNARNADPGNTKPSATDFFRGWAEIKRRDRG
RVSLRQQVAPRASSRASGGAGSLSGARGMRRAATPPPAVFGALGHVVRGG
AGLEKLVTQDVTYVGRGLRIGRTASGEVYVYERCGWPEDA* back to topmRNA from alignment at S-dermatodea_contig10681:3190..7581- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig10681.474.1 ID=mRNA_S-dermatodea_contig10681.474.1|Name=mRNA_S-dermatodea_contig10681.474.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4392bp|location=Sequence derived from alignment at S-dermatodea_contig10681:3190..7581- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGCTCCCCACTCCCACGTCCACCACTCTGTCTCTTGACCCCTTCCTCAG
TGCGTTGCTTGTCGAGAGCGAATATGATGATCGCTGCGCTCCCGCGCTCG
CTCGCGTCTACGATGGTACCACTACTACTACTGATGCTGCTGCAGGGGAC
ATCGGAGGCGCTACGAGTTGTGGCATCGGCTCCGCGAATGGGCATGCTAT
CAGGGCAGTCGCCGCCCTCAGCCACGGTCCGTGGTGCGACGCGGTGGGAC
AATCACCTCGACCTGGCGAGGTGCGCGCACAGGCAGAGGCGCTGGCCGCA
GGTCAGAGAGCTCTGCTCGAGGGTGATCATTTGCGCCGACGATTGGACAG
CCGTTGAGCAAGCGCATCTGCGCCTAGCCCTCGCCGAGCAAAACGACAAG
AGGGTTGACGCTGCACGGAGAGCTTTCCAGGTGAGCAATGCAGAGTAGGG
TTGAAGTCTGGCTCGCGAGGCTTCTGTTGTGGTCGGGTAGAGCGTGTCGT
TTTCGCGCAAGCGTTGTTGAGAGTCCTCGCGTGGACGACAAGCAGCGGTG
GGAGCGGTTCACATACATACAGCAACGGCGCACCCTCACGTACGTGGATA
TCCATCCGAAGATCTCACGTTCGAATTTAATTAACCGTAACACAGCCAAT
TGATACTACAGCAGTTACTTATAGTTGTTCGCAAGCGGGTTTTCCGACAA
AGCGGGTTTTCCGACAACGAGAGTGTCACACTCCCATGGCCCAGCAGAGC
AGCTGTACCACGCAATTCGCGCCAGAACGCTCACGGATTTGTGGGCTTAG
ACCGGATTCTCGGAGAGTTCACAGTATACTACGAGTCGATTCGTGCGAGT
TGAGCACCCTGTTGATGCTGCTGCTGCTACTACTGCCGTACTTTTATTGA
TTGTTCAGGCAAGGAAGAGAAGTTCCTGTAAGCGCATGGAGGAAACTGGG
CTCTGTAGTTGTACATGATACTGCACATACATACTTCTTGTGCTATCATA
TCGTATCCAGAATCGTATCGTGCGTTTGATTTGATGGGATGGCTCGATTG
GGAATGCGGAGACGATTTTGTTAGGCTTGTTGAGGTGCGAGTATCAAATG
AGGAATTTATCGGGCATGTTGAAGTGCAAGTATCAAACGGTCCCAATCGA
ACAACAAGCCTTCAACTCGTAGCGTTTTAGCATAAAACAGCATTGCCATG
CCTCCCCCAAGCGCTGTCGTGGCGAGTTGCTTTACCAGAGGTACATACGA
CGCTCGTTACGTCTTTCTTCGACATTCACGTTGGAAGGTTTTGCGCGACA
GACTATTAATACTAAACTGTCCGATTGCGAGAGGACAACCTGTGATTCCT
CCGAACGGAGTCATCGGAACAATTACCAAATATTTTCGGTGGAATGTTGA
ACCTTAATCTTTGTACCCTTCGCTTTTTCTAGTCGGTAGCGATTCTGAGA
GCTCCAGGAAATCAGCGCTGAAAACGTAAACGTGCCTCAGTTTCCGATCA
CTCATCCACAATTGCGTAACCTGTGTTCCACTGCACCACTAGCACGGAGC
TTGTCAAACCATTCACACGTAGCAAAAGGACAAAAATGGGCGTAGGGCGT
GTATGTGTGTGTGTGTGTGCGTCGGTCTGTTTAGACTCCGAAATAACCAC
CCTGACCCTTTTTTCCCGCCGTCCGCGCCCATGCCCTCCTGCACTCTCTC
GCACTTCCAGCACGGAACGGCGGCATGCCCCAGCTCAGACACGCTGTTCA
TGGCGTGGGCGCTAATGGAGAGCAAGCTCCACAACGCCCGCTCCAGGAAG
GTCGCCCGCGCCCTTCTACGCCGCGCCGTCGCCCTCAACCCCAGCCGCCA
CCGCGGCGTCCTGAAGTGGCGCGTGTTTCTTGACTGGAAGGAGGCGAGCG
AGGCGGCGGTGGAAGCGGTGCGGTCGGCGCTGTCGAATGGACAGACCGTT
ATTACCATTTCTGCCGAGGTGTCCGCCACTGTGGCGTCCGCGGCGCCTGC
CAGCAGGGTTGCTGAAGGCCGGGGCGGAAACGTACCGTGTTCGTCCACTG
CCGCGAGCGCCACCACGGCGGGCGAACCCCGTGCCGAGGAGCGCAGCCAC
GGCCGCGGGGGGCGACCGACGGCGAACGGTAACGCTGCCGTTGCCGCTCC
GTCGCCTCGGCCGCAGCCCGGCGGCATCCGTGAATCGCCCCCCGCGCGGC
AGGCGTCGCCGCCCCACCAGGTCGTGAAACTCGTCACTGGCTGGGGAAGG
AAATGGGCAGAGGAAAAGGAGCACGGTCTATCCGCTGATGTGCTGCAGCT
TTGCGAAGCCTTCGCTGAAGATGCCGCGAGTGGAGCGGCTGGCGCAGGCG
GTAAGAACGTGCGCGATCCCATGCGCGTGGTCCGGATGAAGGAGCTGGCG
GCCGAGCTGGAGCGGACGGGGCGGGGGCTCGTGGGGGGTTTCGACGGGGG
CGGGCGCGAGCTGAGCGGGACGTGGCGGCTGGTATTCACGACTTGCACGA
CGTGCAACCGCATTCTCACCCGAGCAGGTACGACCATGCGCGCGCCCTCC
TCCGTTGTCTCCAGTATGTCGCGCCTTGCTGGGTGGTTGCAAATAATCTG
TTTGCCCACAATCTGCAGACAAGACGCGTTGTGCTCGCCACATCGAGGCA
ACGGAGGCACCACCACGCTGCCCACGTTCTTGGTTCACCCTGTCGCAGTA
GTTGCTGACACGCTACCCGTACCCACCCCCTATCAGAAACTCCCACACCC
CTCTCAACCCGCACACGCCAAGCAGTCGGTACTGTCCATCTCCTCAAAGC
ANNNNNNNNNNTTCTTCCCCCAACGTGATACACAACGCGTTCTTCCCCCC
CCCTCCAAGTCACCGGGCGCCCCCCCCCCACCCCCCTCTTTTTTTTCACC
CTCTCCCCACTAGTGTTGTCCCCCCCCCCCCCCCCCCCCTCTCTTCTCCT
TCCCCCCCAACCTTGCGTCCAGGCAGCGAAGTGTACCAGCGTCTGACCCC
GCCAATCGTGGAGCTCGCGCCGCGCGCGGGCGAGCCTCCGGTACCGTTCC
GCTGCGAGGTTCTCCTGCGCCCAGCATCGAACGCCCGAAACGCAGACCCC
GGCAACACCAAGCCCTCCGCGACCGACTTCTTCAGGGGATGGGCGGAAAT
CAAGAGGCGCGACAGAGGAAGGGTGTCGCTTCGGCAGCAGGTGGCCCCCC
GCGCCTCTTCAAGGGCTTCCGGCGGCGCTGGGTCGCTGTCGGGAGCGAGA
GGGATGCGTCGTGCTGCAACCCCGCCACCTGCAGTTTTTGGAGCCCTTGG
GCATGTAGTTCGCGGGGGCGCGGGGCTGGAGAAGCTGGTGACGCAGGACG
TCACGTACGTTGGCAGGGGATTGAGAATTGGAAGGACGGCCAGTGGAGAG
GTGTACGTGTACGAGCGGTGCGGGTGGCCAGAAGACGCATAGTTGTGTTC
CGCGCGCGGTGCTTTTTTAAGGATTGGAGGCAAGGACAGGTCTCCCGTAG
CGTGCTTGAATGCTTGTACAGTGGATCGGTGGAACAGAGGTATGCGGGCG
TTTCCTGGCTTCTGAGGGAATAGAGATAGCTTTGTGGTGGTGGTGGTGAT
GTTGGTTTGGTTTCGGTTTTTTTTAGAAGAGGGGTGCCACAATAGCACAA
CGGGTTGATATTTGTTTGGTTCTTGTCAAGGAGATGATGCTGCGACGGGC
GGTGTGTGCCGCCCATGAGACATAGTCTACCTGCCGTGAGGGTTCGGTAG
GGTGGCTGATTTCTGGGAGAAATTCCTTCCCTGGAAAGGGCCGTACGCGG
TGAGCGTGTTACCTCTAAGCAGCAAGAGATAGGGGACTGAAGATGCGTCC
CGCGTTCGTGATAGAAAGTGGCTGCCATTGTGTTTGCAGGGCGGGTTCCG
TGTGCTGAAGCGACTCGCGGTTCCCTTTTACTCGTCTACCGGCAGACATT
TTTGTGCTAGTACTTGTACTATAAATAGTGTTGTTTCGGCGTCAACGAGG
GTCAAGTCTTGAGTTATACTTCCGCCATTTTGGAACGCGGTTGTTGTTAT
AATATAGTGATGGGTGCAATCGAACGTTTGCGGGGGGCGTGGTTGGTGGC
GTGGAATATGTTGAGAGGTTGCCATGGAGCTCTTTGGACAAACGACTCGA
GCGTTCGTACGTGCTGTGTTTAAAAAACAAATTGAACAACATTAAAAGCC
GACCATATTTTCGCGTCGGGTCGCAGGGGCATGCGCGCCTCCCAATATCT
TGACCACGCCGCACGGGTTGTGATCGGACCACCAGTTGCGCCGCGAGACA
CACGCACCCTTTCTTCGTCACATTTAGTATTAATAGTAGAACATCGTATG
CCACCTTGATTGACCCTTATCTAAAAGACTTTACGAGATGCC back to topCoding sequence (CDS) from alignment at S-dermatodea_contig10681:3190..7581- >mRNA_S-dermatodea_contig10681.474.1 ID=mRNA_S-dermatodea_contig10681.474.1|Name=mRNA_S-dermatodea_contig10681.474.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2946bp|location=Sequence derived from alignment at S-dermatodea_contig10681:3190..7581- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATGATCGCTGCGCTCCCGCGCTCGCTCGCGTCTACGATGGTACCACT
ACTACTACTGATGCTGCTGCAGGGGACATCGGAGGCGCTACGAGTTGTGG
CATCGGCTCCGCGAATGGGCATGCTATCAGGGCAGTCGCCGCCCTCAGCC
ACGGTCCGTGGTGCGACGCGGTGGGACAATCACCTCGACCTGGCGAGGTG
CGCGCACAGGCAGAGGCGCTGGCCGCAGGTCAGAGAGCTCTGCTCGAGGG
TGATCATTTGCGCCGACGATTGGACAGCCGTTGAGCAAGCGCATCTGCGC
CTAGCCCTCGCCGAGCAAAACGACAAGAGGGTTGACGCTGCACGGAGAGC
TTTCCAGATGATGATCGCTGCGCTCCCGCGCTCGCTCGCGTCTACGATGG
TACCACTACTACTACTGATGCTGCTGCAGGGGACATCGGAGGCGCTACGA
GTTGTGGCATCGGCTCCGCGAATGGGCATGCTATCAGGGCAGTCGCCGCC
CTCAGCCACGGTCCGTGGTGCGACGCGGTGGGACAATCACCTCGACCTGG
CGAGGTGCGCGCACAGGCAGAGGCGCTGGCCGCAGGTCAGAGAGCTCTGC
TCGAGGGTGATCATTTGCGCCGACGATTGGACAGCCGTTGAGCAAGCGCA
TCTGCGCCTAGCCCTCGCCGAGCAAAACGACAAGAGGGTTGACGCTGCAC
GGAGAGCTTTCCAGCACGGAACGGCGGCATGCCCCAGCTCAGACACGCTG
TTCATGGCGTGGGCGCTAATGGAGAGCAAGCTCCACAACGCCCGCTCCAG
GAAGGTCGCCCGCGCCCTTCTACGCCGCGCCGTCGCCCTCAACCCCAGCC
GCCACCGCGGCGTCCTGAAGTGGCGCGTGTTTCTTGACTGGAAGGAGGCG
AGCGAGGCGGCGGTGGAAGCGGTGCGGTCGGCGCTGTCGAATGGACAGAC
CGTTATTACCATTTCTGCCGAGGTGTCCGCCACTGTGGCGTCCGCGGCGC
CTGCCAGCAGGGTTGCTGAAGGCCGGGGCGGAAACGTACCGTGTTCGTCC
ACTGCCGCGAGCGCCACCACGGCGGGCGAACCCCGTGCCGAGGAGCGCAG
CCACGGCCGCGGGGGGCGACCGACGGCGAACGGTAACGCTGCCGTTGCCG
CTCCGTCGCCTCGGCCGCAGCCCGGCGGCATCCGTGAATCGCCCCCCGCG
CGGCAGGCGTCGCCGCCCCACCAGCACGGAACGGCGGCATGCCCCAGCTC
AGACACGCTGTTCATGGCGTGGGCGCTAATGGAGAGCAAGCTCCACAACG
CCCGCTCCAGGAAGGTCGCCCGCGCCCTTCTACGCCGCGCCGTCGCCCTC
AACCCCAGCCGCCACCGCGGCGTCCTGAAGTGGCGCGTGTTTCTTGACTG
GAAGGAGGCGAGCGAGGCGGCGGTGGAAGCGGTGCGGTCGGCGCTGTCGA
ATGGACAGACCGTTATTACCATTTCTGCCGAGGTGTCCGCCACTGTGGCG
TCCGCGGCGCCTGCCAGCAGGGTTGCTGAAGGCCGGGGCGGAAACGTACC
GTGTTCGTCCACTGCCGCGAGCGCCACCACGGCGGGCGAACCCCGTGCCG
AGGAGCGCAGCCACGGCCGCGGGGGGCGACCGACGGCGAACGGTAACGCT
GCCGTTGCCGCTCCGTCGCCTCGGCCGCAGCCCGGCGGCATCCGTGAATC
GCCCCCCGCGCGGCAGGCGTCGCCGCCCCACCAGGAGCTGGCGGCCGAGC
TGGAGCGGACGGGGCGGGGGCTCGTGGGGGGTTTCGACGGGGGCGGGCGC
GAGCTGAGCGGGACGTGGCGGCTGGTATTCACGACTTGCACGACGTGCAA
CCGCATTCTCACCCGAGCAGGAGCTGGCGGCCGAGCTGGAGCGGACGGGG
CGGGGGCTCGTGGGGGGTTTCGACGGGGGCGGGCGCGAGCTGAGCGGGAC
GTGGCGGCTGGTATTCACGACTTGCACGACGTGCAACCGCATTCTCACCC
GAGCAGGCAGCGAAGTGTACCAGCGTCTGACCCCGCCAATCGTGGAGCTC
GCGCCGCGCGCGGGCGAGCCTCCGGTACCGTTCCGCTGCGAGGTTCTCCT
GCGCCCAGCATCGAACGCCCGAAACGCAGACCCCGGCAACACCAAGCCCT
CCGCGACCGACTTCTTCAGGGGATGGGCGGAAATCAAGAGGCGCGACAGA
GGAAGGGTGTCGCTTCGGCAGCAGGTGGCCCCCCGCGCCTCTTCAAGGGC
TTCCGGCGGCGCTGGGTCGCTGTCGGGAGCGAGAGGGATGCGTCGTGCTG
CAACCCCGCCACCTGCAGTTTTTGGAGCCCTTGGGCATGTAGTTCGCGGG
GGCGCGGGGCTGGAGAAGCTGGTGACGCAGGACGTCACGTACGTTGGCAG
GGGATTGAGAATTGGAAGGACGGCCAGTGGAGAGGTGTACGTGTACGAGC
GGTGCGGGTGGCCAGAAGACGCATAGGCAGCGAAGTGTACCAGCGTCTGA
CCCCGCCAATCGTGGAGCTCGCGCCGCGCGCGGGCGAGCCTCCGGTACCG
TTCCGCTGCGAGGTTCTCCTGCGCCCAGCATCGAACGCCCGAAACGCAGA
CCCCGGCAACACCAAGCCCTCCGCGACCGACTTCTTCAGGGGATGGGCGG
AAATCAAGAGGCGCGACAGAGGAAGGGTGTCGCTTCGGCAGCAGGTGGCC
CCCCGCGCCTCTTCAAGGGCTTCCGGCGGCGCTGGGTCGCTGTCGGGAGC
GAGAGGGATGCGTCGTGCTGCAACCCCGCCACCTGCAGTTTTTGGAGCCC
TTGGGCATGTAGTTCGCGGGGGCGCGGGGCTGGAGAAGCTGGTGACGCAG
GACGTCACGTACGTTGGCAGGGGATTGAGAATTGGAAGGACGGCCAGTGG
AGAGGTGTACGTGTACGAGCGGTGCGGGTGGCCAGAAGACGCATAG back to top
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