prot_S-dermatodea_contig10665.468.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig10665.468.1
Unique Nameprot_S-dermatodea_contig10665.468.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length283
Homology
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BLAST of mRNA_S-dermatodea_contig10665.468.1 vs. uniprot
Match: A0A6H5LB40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB40_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 3.840e-15
Identity = 59/141 (41.84%), Postives = 70/141 (49.65%), Query Frame = 0 
Query:    1 MTLVTRSGFCE---STRMQELSVELSNACRAGARWSLRVA-----------ELTPQRLMEHLWPRPSLAFLGLPGR------------------SRVALRRSIVTVHFDSDRAVVFTSWPAAMRRLEFGARFNRPLEGVVL 109
            +T V  SGF     +  +QELS++LSNACRA A WSL VA           EL P RL  H+WP  S   L   G                   +R+  RR I  V  +SD AV   SWP+ MR LEFG RFN P+EGV L
Sbjct:  269 LTCVALSGFVPGGGAAVVQELSLDLSNACRALASWSLTVARVMAEEEEHSGELMPARLANHIWPGSSALALRKRGERGGGKDGGQVGCGTQAAGARLEPRRRITRVKVESDIAVTAASWPSTMRCLEFGDRFNSPVEGVDL 409
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BLAST of mRNA_S-dermatodea_contig10665.468.1 vs. uniprot
Match: D7FZV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZV7_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.060e-6
Identity = 36/90 (40.00%), Postives = 43/90 (47.78%), Query Frame = 0 
Query:   38 ELTPQRLMEHLWPRPSLAFLGLPGR------------------SRVALRRSIVTVHFDSDRAVVFTSWPAAMRRLEFGARFNRPLEGVVL 109
            +L P RL +H+WP  S   L   G                   +R+  RR I  V   SD  V   SWP+ MRRLEFG RFN P+EGV L
Sbjct:  116 KLMPARLADHIWPGSSALALRQRGERGGGKDGGQGGGGTQAAGARLEPRRRITRVKVKSDVGVTAASWPSTMRRLEFGGRFNSPVEGVDL 205
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10665.468.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LB40_9PHAE3.840e-1541.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZV7_ECTSI1.060e-640.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 73..256
e-value: 3.9E-6
score: 27.5
IPR008615FNIPPFAMPF05725FNIPcoord: 100..142
e-value: 8.3E-9
score: 35.5
NoneNo IPR availablePANTHERPTHR32134:SF86coord: 88..273
NoneNo IPR availablePANTHERPTHR32134UNCHARACTERIZEDcoord: 88..273

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10665contigS-dermatodea_contig10665:940..4903 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10665.468.1mRNA_S-dermatodea_contig10665.468.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig10665 940..4903 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig10665.468.1 ID=prot_S-dermatodea_contig10665.468.1|Name=mRNA_S-dermatodea_contig10665.468.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=283bp
MTLVTRSGFCESTRMQELSVELSNACRAGARWSLRVAELTPQRLMEHLWP
RPSLAFLGLPGRSRVALRRSIVTVHFDSDRAVVFTSWPAAMRRLEFGARF
NRPLEGVVLPDALEFLSFGARFNQPVSRVRWPASLKELAFGNNFNQPVSG
IDLPAGLLRLDFGGRFNSAISAVDWPEGLRELRFGHGFNREIASVRWPPR
LEKLEFCGEFQQRIEDVAWPPTLQHLALLGDFNQPVNAVEWPASMRAIHF
GDGFRQPLVSIRWPRGLEEVVLGCGFDQPLGLC
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR008615FNIP