mRNA_S-dermatodea_contig10665.468.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10665.468.1
Unique NamemRNA_S-dermatodea_contig10665.468.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10665.468.1 vs. uniprot
Match: A0A6H5LB40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB40_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 3.840e-15
Identity = 59/141 (41.84%), Postives = 70/141 (49.65%), Query Frame = 1 
Query:    1 MTLVTRSGFCE---STRMQELSVELSNACRAGARWSLRVA-----------ELTPQRLMEHLWPRPSLAFLGLPGR------------------SRVALRRSIVTVHFDSDRAVVFTSWPAAMRRLEFGARFNRPLEGVVL 327
            +T V  SGF     +  +QELS++LSNACRA A WSL VA           EL P RL  H+WP  S   L   G                   +R+  RR I  V  +SD AV   SWP+ MR LEFG RFN P+EGV L
Sbjct:  269 LTCVALSGFVPGGGAAVVQELSLDLSNACRALASWSLTVARVMAEEEEHSGELMPARLANHIWPGSSALALRKRGERGGGKDGGQVGCGTQAAGARLEPRRRITRVKVESDIAVTAASWPSTMRCLEFGDRFNSPVEGVDL 409
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BLAST of mRNA_S-dermatodea_contig10665.468.1 vs. uniprot
Match: D7FZV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZV7_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.060e-6
Identity = 36/90 (40.00%), Postives = 43/90 (47.78%), Query Frame = 1 
Query:  112 ELTPQRLMEHLWPRPSLAFLGLPGR------------------SRVALRRSIVTVHFDSDRAVVFTSWPAAMRRLEFGARFNRPLEGVVL 327
            +L P RL +H+WP  S   L   G                   +R+  RR I  V   SD  V   SWP+ MRRLEFG RFN P+EGV L
Sbjct:  116 KLMPARLADHIWPGSSALALRQRGERGGGKDGGQGGGGTQAAGARLEPRRRITRVKVKSDVGVTAASWPSTMRRLEFGGRFNSPVEGVDL 205
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10665.468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LB40_9PHAE3.840e-1541.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZV7_ECTSI1.060e-640.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10665contigS-dermatodea_contig10665:940..4903 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size849
Cds size849
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10665.468.1prot_S-dermatodea_contig10665.468.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10665 940..4903 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924168.6698413-CDS-S-dermatodea_contig10665:939..12281622924168.6698413-CDS-S-dermatodea_contig10665:939..1228Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10665 940..1228 -
1694079064.712798-CDS-S-dermatodea_contig10665:939..12281694079064.712798-CDS-S-dermatodea_contig10665:939..1228Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10665 940..1228 -
1622924168.681195-CDS-S-dermatodea_contig10665:3161..33491622924168.681195-CDS-S-dermatodea_contig10665:3161..3349Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10665 3162..3349 -
1694079064.7220323-CDS-S-dermatodea_contig10665:3161..33491694079064.7220323-CDS-S-dermatodea_contig10665:3161..3349Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10665 3162..3349 -
1622924168.690921-CDS-S-dermatodea_contig10665:4531..49031622924168.690921-CDS-S-dermatodea_contig10665:4531..4903Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10665 4532..4903 -
1694079064.7331967-CDS-S-dermatodea_contig10665:4531..49031694079064.7331967-CDS-S-dermatodea_contig10665:4531..4903Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10665 4532..4903 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10665.468.1

>prot_S-dermatodea_contig10665.468.1 ID=prot_S-dermatodea_contig10665.468.1|Name=mRNA_S-dermatodea_contig10665.468.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=283bp
MTLVTRSGFCESTRMQELSVELSNACRAGARWSLRVAELTPQRLMEHLWP
RPSLAFLGLPGRSRVALRRSIVTVHFDSDRAVVFTSWPAAMRRLEFGARF
NRPLEGVVLPDALEFLSFGARFNQPVSRVRWPASLKELAFGNNFNQPVSG
IDLPAGLLRLDFGGRFNSAISAVDWPEGLRELRFGHGFNREIASVRWPPR
LEKLEFCGEFQQRIEDVAWPPTLQHLALLGDFNQPVNAVEWPASMRAIHF
GDGFRQPLVSIRWPRGLEEVVLGCGFDQPLGLC
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mRNA from alignment at S-dermatodea_contig10665:940..4903-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10665.468.1 ID=mRNA_S-dermatodea_contig10665.468.1|Name=mRNA_S-dermatodea_contig10665.468.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3964bp|location=Sequence derived from alignment at S-dermatodea_contig10665:940..4903- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACGCTGGTTACCCGGTCTGGGTTCTGCGAGTCGACCCGAATGCAGGA
GCTATCGGTGGAGCTTAGCAACGCGTGCCGGGCGGGCGCGCGGTGGTCGC
TGCGCGTGGCGGAGTTGACCCCCCAGCGGCTGATGGAGCACTTGTGGCCG
AGGCCGAGCCTCGCCTTTCTCGGGCTGCCGGGGAGGTCGAGGGTCGCGCT
GAGGAGGTCGATCGTGACGGTCCACTTCGACTCCGATCGCGCCGTGGTGT
TCACTTCGTGGCCGGCGGCGATGCGGAGGCTTGAGTTCGGGGCGCGTTTC
AACAGGCCTTTGGAGGGTGTCGTGCTGCCCGACGCCCTCGAGTTTCTGTC
ATTCGGTGCTCGCTTTAACCAGGTGCGTGGGGGCGTGGAAGTGGTTGGTG
GGACGCGGAGGAGAGAGCTGGGTTTGTTTATGCTGCCTTGTTGTTTTTTG
TTGTTTTTAAGTTTCGAGGTATGATGTGTGTCCCCTCTGATGCCGAGCGT
TTTGTTTAGGTGTATTTTGTATTATATACTATTGGTAGGATGGTTAAATT
TGTGGCTTTACTTTTCCATATATCATCTGAACCGCGAACGAGCGAGATCG
GCGTTGGTCGGTTGTTAAGTGTGATGATACAGTCAAATTTGGGCACCGCG
TATAATTCACCACCCTATGATAGCCGTTTGGACAGTCAGTCCGCACTTAA
ACCCCCCCCCCCCCCCCCCCCATGATGGAGGATAAAAAGTGGCCTGAGAA
GGCGAGAATCGATGTAAGACAGGATCATAACAAAAACAATTGCGCCAACA
TTTGACAAAGTAGGAAAAGGCACGATTGGCTATCGGCGATCGGTCGATCG
ATTCTGTGGGAACAATGCTCCGTCCTCCCTCCAGAGGACGCGTCCCGTAC
ATAGCCAACCGTCTATATAACAGCTAAGGCATGCAAAACTTGAGTGTACC
CCTACGCTCTGCCCCGCCCCGCCCCGCCCTGAGCAATCCAAAGATAGGGG
AGGGAGGGGTTGTCTGCCGGCCACCCTCAATAATATTGTTGCAATCCGGA
ACAACCTGGTGTAAAAACTCCGAAGGATTCTGATCGGAATGTGGGTTTTG
GACGTTCGGTAAGAATATTAACCTTTTCCGTTGGTCTGTCGACTGCACGA
TGGCTTTGGAAGTAATATTGCAGTGCACCGACAGCCACCTTGCATTCAGT
CAGTCAGCGTTGTAGAGCTACCGGTGGTGTTGTAGCCAACGCGTCGCCTG
CTGGGGGAGATAGCACAGCAGGATGGACTGCATCGATTCCCACCCCACCC
GCCCATCGATTGGTGTATTTCTTGGAACGGGATCTGAGATGGGCTGGCCA
ATCAGGCGTGAGCACAGCGAAGTGGAAAAATGCCTTCTAACTCCTGCACG
ACAAAAAAAAGCCGATTTCTTACCCCCCCCCCCCCCCCTATATTTTTCGT
TGCTCCCCGCCCCTTCCGCCCCACACCCCTCGCTCCCCCGACAATGGTGT
AACTGCGGTCGGCTCCGCCAATTTACACTTGTGGCCTCGTTTTTTGAGCC
GCAGCCTGTCAGCCGGGTCCGATGGCCCGCCTCGCTGAAGGAGCTAGCCT
TCGGGAACAATTTCAATCAGCCTGTGTCCGGCATCGATCTCCCAGCGGGA
CTGCTCCGCCTTGACTTCGGGGGCAGGTTCAACTCCGCGATCTCGGCGGT
AGACTGGCCGGAGGGGCTGAGAGAGCTCCGCTTCGGGCACGGGTGAGTGC
GCGGGGGGCGTGCGTGCGCGCTTGGGTTTCGATCGTTTTTGAATTTTTTA
GCGGGAAGTTTTGCGGTGAACGGGCATTGGGGGGGCGCTTCCAGAAGTGG
AATCTGGATTTTGAAAGAGCGAGAGTATCGGTCTGTTGCATGTTCAGATA
CTCGGTATTAGAGACGTTCGGAGATTGTTCGGAGAATGTTACGGATGGAT
GCATTCCAGATTCAGCGCTCCCCGCCCGCCCGCCCAAAAACTAACCAGGG
CAAGCCGTGAATCTGAAAGGCGCTTGATTGATTGCTTGATTGATTGATTG
ATTGATTGATTGATTGAAACAACCAGGGTAAACCGTTGGTCGCGTCTGAA
AAGGCATTTTATTGATTGAAAGAAAAAAAAACAGGGCAAGCAGGGAATCT
AGAAATATATCAGGGTCAGCCGTTAATCTAGACTGAAAGGCGTTTATTTG
ATTGATTGATTGCTTGATTGATTGCTTGATTGATTGAAACAAACCAGGGC
AAACCGTGAATCGCGACTGAAAGGGGTTTGATTGATTGATTGATTGAAAC
AATCCAGGGCAAGCCGTGAAGCGTGACTGAAAAGGAGTTTTTTTTATTGG
TTGATTTGATTGATATAGACCAGGGCAAGCCGTGAATCGCGACTGAAAAG
GCGTTTGATCGATTGATTGAAACAAAACCAGGGCAAGCCGTGAATCGCGA
TTGAAAAGGCATTTTATTGAATGATTGTTTAATTGAAACAAACCAAGGCA
AGCCGTGAATCGCGACTGAGAACCATTATATTTATTTGAATGATTGATTG
AAACAAACTAGGGCAAGCCGTGGATCGCGACTGAAAAGGCGTTTGATTGG
TTGATTGAGACAAACCAGGCAAACCGTGAATCGCGACTGAAAAGGCATTT
AATTGATTGGTTGAAAGAAACCAGGGTAAGCCGTGAACCGCGACTGAGAA
GGCGTTGCTCGATTGATTGAAGCAAAACCAGGGTAAGCCGTGAATCGTGA
CTGAAAAGGCGTTTTTTTATTGATGGATTGAAATTAACCCTTTAGGTACA
ATTAAGTTGCTAGTTTAAATTAGTATTAATAATTAGTAGGGCTCTCCGAA
ACGGCCAAAAGCTCTCTCGATGCGACTCGACAGCTACAGTCCCGTTTCCC
TTGCCCTCCGTTCTCTCTCATTCCTGCGTCGTAACTCATGGAGTTCCCCA
GGGCCCCGCTTCAAGCACGCCTCATTACGTGCTAACAGGCGCTCCAAACA
GTATAGTATTAGGGGCTAGTACCAAAAGGGTTAACCAGAGTAGCCGTGGA
TCGAGACTGAAAAGGCATTTGATTGGTTGATTGATTGAAACGAACCAGGG
CAAGCCGTGAATCGCGACTAAAAAGGCATTTGATCGATTGATTGGTTGAT
ATAAAAATACAAAGGCAAATCGTGAATCGCGACTTAAAAGGCATTTGATT
GATTGATTGAAACACACCAGGGCAAGCCGTGAATCGCGACTGAGATACTT
TTTTTTTTTTTTTATTGAAGCAATGGCAAACCGTGAAAAGCGACTGAAAC
GTGCTTGATTGATCGATGGATTGATTGATTGAAACAAACGAGGGCAGGCC
GTGAATTGCGACTGAAAGGCGCTTGATTGGTTGATGGATTAGAACAAACC
AGGTCAGGGCGTGAATCGCGAGTGAGAGGCATATGATTGATGGATGAATT
GATTGATTGATTGATTGATTGCTTGATTGGTTCATTTGACTTGTCACGCA
CACAACCGACCGGCTCGTGGTGGTTTTCCGATCCCACTCGCTCGCTCGCT
CGTTCGTGGTCAGATGAGAAAATCGAGAAATCGAAATGGAGGACGTTTGA
AATATCTCTTTCAACCCCCCCCGCATCCCGTCACACGCGCACGCTTATGG
CGCAAACACCAAAATTCCGCCACAGGTTTAACCGGGAGATCGCGAGCGTC
CGGTGGCCGCCGAGGCTGGAAAAGCTGGAGTTCTGCGGAGAATTTCAACA
GAGAATCGAGGACGTCGCCTGGCCCCCCACCCTGCAGCACCTCGCCCTTC
TCGGAGACTTCAACCAGCCGGTCAACGCGGTGGAGTGGCCGGCGAGCATG
CGAGCCATTCACTTCGGCGACGGGTTCCGGCAGCCCTTGGTGAGCATTCG
GTGGCCGCGCGGGCTTGAGGAGGTCGTGCTCGGGTGCGGCTTCGACCAGC
CGCTCGGCCTGTGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10665:940..4903-

>mRNA_S-dermatodea_contig10665.468.1 ID=mRNA_S-dermatodea_contig10665.468.1|Name=mRNA_S-dermatodea_contig10665.468.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1698bp|location=Sequence derived from alignment at S-dermatodea_contig10665:940..4903- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACGCTGGTTACCCGGTCTGGGTTCTGCGAGTCGACCCGAATGCAGGA
GCTATCGGTGGAGCTTAGCAACGCGTGCCGGGCGGGCGCGCGGTGGTCGC
TGCGCGTGGCGGAGTTGACCCCCCAGCGGCTGATGGAGCACTTGTGGCCG
AGGCCGAGCCTCGCCTTTCTCGGGCTGCCGGGGAGGTCGAGGGTCGCGCT
GAGGAGGTCGATCGTGACGGTCCACTTCGACTCCGATCGCGCCGTGGTGT
TCACTTCGTGGCCGGCGGCGATGCGGAGGCTTGAGTTCGGGGCGCGTTTC
AACAGGCCTTTGGAGGGTGTCGTGCTGCCCGACGCCCTCGAGTTTCTGTC
ATTCGGTGCTCGCTTTAACCAGATGACGCTGGTTACCCGGTCTGGGTTCT
GCGAGTCGACCCGAATGCAGGAGCTATCGGTGGAGCTTAGCAACGCGTGC
CGGGCGGGCGCGCGGTGGTCGCTGCGCGTGGCGGAGTTGACCCCCCAGCG
GCTGATGGAGCACTTGTGGCCGAGGCCGAGCCTCGCCTTTCTCGGGCTGC
CGGGGAGGTCGAGGGTCGCGCTGAGGAGGTCGATCGTGACGGTCCACTTC
GACTCCGATCGCGCCGTGGTGTTCACTTCGTGGCCGGCGGCGATGCGGAG
GCTTGAGTTCGGGGCGCGTTTCAACAGGCCTTTGGAGGGTGTCGTGCTGC
CCGACGCCCTCGAGTTTCTGTCATTCGGTGCTCGCTTTAACCAGCCTGTC
AGCCGGGTCCGATGGCCCGCCTCGCTGAAGGAGCTAGCCTTCGGGAACAA
TTTCAATCAGCCTGTGTCCGGCATCGATCTCCCAGCGGGACTGCTCCGCC
TTGACTTCGGGGGCAGGTTCAACTCCGCGATCTCGGCGGTAGACTGGCCG
GAGGGGCTGAGAGAGCTCCGCTTCGGGCACGGCCTGTCAGCCGGGTCCGA
TGGCCCGCCTCGCTGAAGGAGCTAGCCTTCGGGAACAATTTCAATCAGCC
TGTGTCCGGCATCGATCTCCCAGCGGGACTGCTCCGCCTTGACTTCGGGG
GCAGGTTCAACTCCGCGATCTCGGCGGTAGACTGGCCGGAGGGGCTGAGA
GAGCTCCGCTTCGGGCACGGGTTTAACCGGGAGATCGCGAGCGTCCGGTG
GCCGCCGAGGCTGGAAAAGCTGGAGTTCTGCGGAGAATTTCAACAGAGAA
TCGAGGACGTCGCCTGGCCCCCCACCCTGCAGCACCTCGCCCTTCTCGGA
GACTTCAACCAGCCGGTCAACGCGGTGGAGTGGCCGGCGAGCATGCGAGC
CATTCACTTCGGCGACGGGTTCCGGCAGCCCTTGGTGAGCATTCGGTGGC
CGCGCGGGCTTGAGGAGGTCGTGCTCGGGTGCGGCTTCGACCAGCCGCTC
GGCCTGTGCGTTTAACCGGGAGATCGCGAGCGTCCGGTGGCCGCCGAGGC
TGGAAAAGCTGGAGTTCTGCGGAGAATTTCAACAGAGAATCGAGGACGTC
GCCTGGCCCCCCACCCTGCAGCACCTCGCCCTTCTCGGAGACTTCAACCA
GCCGGTCAACGCGGTGGAGTGGCCGGCGAGCATGCGAGCCATTCACTTCG
GCGACGGGTTCCGGCAGCCCTTGGTGAGCATTCGGTGGCCGCGCGGGCTT
GAGGAGGTCGTGCTCGGGTGCGGCTTCGACCAGCCGCTCGGCCTGTGC
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