prot_S-dermatodea_contig10659.459.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig10659.459.1
Unique Nameprot_S-dermatodea_contig10659.459.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length203
Homology
BLAST of mRNA_S-dermatodea_contig10659.459.1 vs. uniprot
Match: A0A6H5KF55_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF55_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 1.270e-34
Identity = 77/123 (62.60%), Postives = 90/123 (73.17%), Query Frame = 0
Query:   74 NVLCEEVPQRARWWNSQALLPRFVGTILELLHELHAPSNRGG---RRSRVEGCGPR-RGASLTQMRKQSEHLFTLLLEISRVSPAETRFLVRAGAIPRVLHAVLGE-GCPVVPQEFADRYGDE 191
            +VL EEVP+R RWWNS AL+PRFVGTIL+LLHELH+ S+RG    R S+V GC P  R   + Q RKQSEHLF LLLEI R+S AETR L+RAG IPRVLHA+LG      +P+E   R GDE
Sbjct: 1082 DVLFEEVPRRLRWWNSVALVPRFVGTILDLLHELHSSSDRGTSGLRSSKVSGCDPSPRRTCVVQRRKQSEHLFGLLLEIGRISHAETRLLLRAGTIPRVLHAILGSLRHQPIPRELLLRCGDE 1204          
BLAST of mRNA_S-dermatodea_contig10659.459.1 vs. uniprot
Match: D7FK75_ECTSI (Ubiquitin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK75_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 5.640e-27
Identity = 71/135 (52.59%), Postives = 86/135 (63.70%), Query Frame = 0
Query:   47 GKRRLADQ-------PSSQHEAESENAEKVH----EEVNVLCEEVPQRARWWNSQALLPRFVGTILELLHELHAPSNRGG---RRSRVEGCGPR-RGASLTQMRKQSEHLFTLLLEISRVSPAETRFLVRAGAIP 166
            GKRR+ +Q       PSS      +   +V     +  +VL EE P+R RWWN  AL+PRFVGTIL+LLHELH+ S+RG    R S+V GC P  R   + Q RKQSEHLF LLLEI R+S AETR L+RAG IP
Sbjct: 2698 GKRRVGEQGARVPSSPSSLSSVSDDGQPQVQPSSADVESVLFEEAPRRLRWWNCVALVPRFVGTILDLLHELHSSSDRGTSGFRSSKVSGCDPSPRRTPVVQRRKQSEHLFGLLLEIGRISHAETRLLLRAGTIP 2832          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10659.459.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KF55_9PHAE1.270e-3462.60USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FK75_ECTSI5.640e-2752.59Ubiquitin domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10659contigS-dermatodea_contig10659:1118..3318 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10659.459.1mRNA_S-dermatodea_contig10659.459.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig10659 1117..3318 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig10659.459.1 ID=prot_S-dermatodea_contig10659.459.1|Name=mRNA_S-dermatodea_contig10659.459.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=203bp
GSKKRPRHEAVGGEATEACSKREDGEGRPVGVGSAVDAEAREDGPPGKRR
LADQPSSQHEAESENAEKVHEEVNVLCEEVPQRARWWNSQALLPRFVGTI
LELLHELHAPSNRGGRRSRVEGCGPRRGASLTQMRKQSEHLFTLLLEISR
VSPAETRFLVRAGAIPRVLHAVLGEGCPVVPQEFADRYGDEQCRQEGEDM
DMA
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