mRNA_S-dermatodea_contig10659.459.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10659.459.1
Unique NamemRNA_S-dermatodea_contig10659.459.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig10659.459.1 vs. uniprot
Match: A0A6H5KF55_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF55_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 1.270e-34
Identity = 77/123 (62.60%), Postives = 90/123 (73.17%), Query Frame = 1 
Query:  220 NVLCEEVPQRARWWNSQALLPRFVGTILELLHELHAPSNRGG---RRSRVEGCGPR-RGASLTQMRKQSEHLFTLLLEISRVSPAETRFLVRAGAIPRVLHAVLGE-GCPVVPQEFADRYGDE 573
            +VL EEVP+R RWWNS AL+PRFVGTIL+LLHELH+ S+RG    R S+V GC P  R   + Q RKQSEHLF LLLEI R+S AETR L+RAG IPRVLHA+LG      +P+E   R GDE
Sbjct: 1082 DVLFEEVPRRLRWWNSVALVPRFVGTILDLLHELHSSSDRGTSGLRSSKVSGCDPSPRRTCVVQRRKQSEHLFGLLLEIGRISHAETRLLLRAGTIPRVLHAILGSLRHQPIPRELLLRCGDE 1204
[Close]
BLAST of mRNA_S-dermatodea_contig10659.459.1 vs. uniprot
Match: D7FK75_ECTSI (Ubiquitin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK75_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 5.640e-27
Identity = 71/135 (52.59%), Postives = 86/135 (63.70%), Query Frame = 1 
Query:  139 GKRRLADQ-------PSSQHEAESENAEKVH----EEVNVLCEEVPQRARWWNSQALLPRFVGTILELLHELHAPSNRGG---RRSRVEGCGPR-RGASLTQMRKQSEHLFTLLLEISRVSPAETRFLVRAGAIP 498
            GKRR+ +Q       PSS      +   +V     +  +VL EE P+R RWWN  AL+PRFVGTIL+LLHELH+ S+RG    R S+V GC P  R   + Q RKQSEHLF LLLEI R+S AETR L+RAG IP
Sbjct: 2698 GKRRVGEQGARVPSSPSSLSSVSDDGQPQVQPSSADVESVLFEEAPRRLRWWNCVALVPRFVGTILDLLHELHSSSDRGTSGFRSSKVSGCDPSPRRTPVVQRRKQSEHLFGLLLEIGRISHAETRLLLRAGTIP 2832
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10659.459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KF55_9PHAE1.270e-3462.60USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FK75_ECTSI5.640e-2752.59Ubiquitin domain-containing protein n=1 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10659contigS-dermatodea_contig10659:1117..3318 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.5
Seed ortholog evalue7.4e-24
Seed eggNOG ortholog2880.D7FK75
KEGG koko:K11840,ko:K11853,ko:K11869
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5077@1,KOG1866@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Exons4
Model size610
Cds size609
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10659.459.1prot_S-dermatodea_contig10659.459.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10659 1118..3318 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924168.0940864-CDS-S-dermatodea_contig10659:1117..12261622924168.0940864-CDS-S-dermatodea_contig10659:1117..1226Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10659 1118..1226 -
1694079064.2847466-CDS-S-dermatodea_contig10659:1117..12261694079064.2847466-CDS-S-dermatodea_contig10659:1117..1226Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10659 1118..1226 -
1622924168.10251-CDS-S-dermatodea_contig10659:1566..17481622924168.10251-CDS-S-dermatodea_contig10659:1566..1748Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10659 1567..1748 -
1694079064.2951295-CDS-S-dermatodea_contig10659:1566..17481694079064.2951295-CDS-S-dermatodea_contig10659:1566..1748Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10659 1567..1748 -
1622924168.1105323-CDS-S-dermatodea_contig10659:2563..27011622924168.1105323-CDS-S-dermatodea_contig10659:2563..2701Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10659 2564..2701 -
1694079064.308352-CDS-S-dermatodea_contig10659:2563..27011694079064.308352-CDS-S-dermatodea_contig10659:2563..2701Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10659 2564..2701 -
1622924168.1182382-CDS-S-dermatodea_contig10659:3138..33181622924168.1182382-CDS-S-dermatodea_contig10659:3138..3318Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10659 3139..3318 -
1694079064.3182826-CDS-S-dermatodea_contig10659:3138..33181694079064.3182826-CDS-S-dermatodea_contig10659:3138..3318Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10659 3139..3318 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10659.459.1

>prot_S-dermatodea_contig10659.459.1 ID=prot_S-dermatodea_contig10659.459.1|Name=mRNA_S-dermatodea_contig10659.459.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=203bp
GSKKRPRHEAVGGEATEACSKREDGEGRPVGVGSAVDAEAREDGPPGKRR
LADQPSSQHEAESENAEKVHEEVNVLCEEVPQRARWWNSQALLPRFVGTI
LELLHELHAPSNRGGRRSRVEGCGPRRGASLTQMRKQSEHLFTLLLEISR
VSPAETRFLVRAGAIPRVLHAVLGEGCPVVPQEFADRYGDEQCRQEGEDM
DMA
back to top

mRNA from alignment at S-dermatodea_contig10659:1117..3318-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10659.459.1 ID=mRNA_S-dermatodea_contig10659.459.1|Name=mRNA_S-dermatodea_contig10659.459.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2202bp|location=Sequence derived from alignment at S-dermatodea_contig10659:1117..3318- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCTCCAAGAAGCGACCTCGACACGAGGCAGTCGGCGGTGAAGCGACGGA
GGCGTGTTCGAAGCGTGAAGACGGAGAAGGCCGCCCTGTTGGTGTTGGTT
CCGCTGTAGACGCTGAAGCGAGAGAGGACGGCCCGCCCGGGAAAAGGAGG
CTTGCGGACCAGCCATCTTCGCAGCATGAAGTGAGTCGGTGTAGCCACAT
TGCGTTTTTTTCTGCTGACGGCAGGTGTGGAACCAGAATTTTGTGCCTGT
CGTCTTTGGGGGCAGGGAGACCGTCGCGAACAGGATTATAGTGCCGCCCC
TGGCCATTGGGTCGTAGGTTTCAATCGCGTGCGCTTGCTCAGCGGCCGTG
CCTTGCGGCTACATCCGCCCCCGCCAGCTTGCTCAATGCGGGGTTACGTG
TCTCTGCTACGTCTTAAGATAACGAAGAATATGTGTACGTTTGCCGCCGC
ACAGCGTTGCGTAAGATTCCGGTGTCCTTCCTACTAGCGTTCGTTAGCTT
GCAAGGTTTAGATCCGAGGAGGGGAGCTGCCGGTCTAGTCGCCGGCAGTG
CCCGTACCTGCGCTTTCCAACCGATTGTGTTTGTTTTTGTGCCCGTTTGG
TTTGCCCTGTTCCCTAGGCCGAGTCAGAGAACGCGGAGAAGGTGCATGAA
GAGGTGAACGTGTTGTGCGAGGAGGTGCCACAGCGCGCACGGTGGTGGAA
CTCTCAAGCTCTCTTACCTCGCTTCGTGGGAACTATCCTGGAGCTTCTTC
ACGAGGTGTGAGGGGTGACCTCGTTCAATCTATTACATTTTTTGTCTTCT
AGTTATAGGTTTGGGGACCTGCAGCCGCTGGGCGTGATGCTCTATATTGT
TGCCTCCTTTCTTGCCAAGCAATCGGTCGAGGCAGTGACTCGGATGGAGC
ATATATTTGTCTTTACCTACTATGATACCTGTCAGCAGCACGTCCGAGAG
CCGCTGCCGGCTTCCTTCTGCGTGTGCTTTGCGGATTGATGCGTCCTTTC
CGACTCAGTATATCTTGCTACTATTCCCCTTGGGCTCTCACTCATACTAA
TCGGCACGTGGAGGAACCTGCCTCGGCGAATTCTCCGGCGTGCCCACCAT
GACGTCAAGATTTGTAGATCCGACGAGGTGGTCCTTACAACTCAAGCTTG
CCCCACAGCAAATCCTTCTCCAAGATCCTAGAATCTTAGAACGTGCAGTG
CAGTGAGTCGCGTGATCCGTCGTTTTCTGGTGCAAGGCGGCCCAGGCCAC
CCTTTCGATCTTGGGCTATGTACAAGGATACCGGTAGAAACACACAACGC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCACCCCCCCC
CCCACCCCCCCCCCCCCCCCCCCCGCCCGGCGCCCCCCGCCCCCACCGCC
CCGCACCCCCCAAAAAACACCACCNNNNNNNNNNCACGCGCGCCACCGCT
CTCAGCCACATCGTCGCACGCACAAAGATCAACACCATCATCGCCACCAA
CAGCACTTCCCCAATCCCTCCACCTCTCGTTTCCGAACCAACCGCCTCTC
GTTTTGACCGCCTCATGCAGCTGCATGCACCAAGCAACAGGGGCGGGAGG
CGGTCAAGAGTCGAAGGGTGCGGCCCACGTAGAGGGGCATCCTTGACGCA
GATGCGCAAACAGTCTGAGCACCTGTTCACGCTTCTGCTCGAGATAAGCC
GTGTCAGCCCCGCGGAAACGCGTTTTCTCGTGCGCGCGGGGGCGATTCCA
AGGTGCGGGGTGTTGTGGCCGCTGACCCGCCATCGTTTTTGTTCACGCCC
TTCGGTTCTTTTTCACTGCTTGAGTGCGAGAAGCGCAAACTTTGTTGTCC
ATGCTGTTGGCTCCCGAAAATCTGTGTATGTGTGGTTGAAAGGATTTTTC
TTGTGCACTCGGAAGCAGTAATCCGTCCCCCCTTCCCTCAAGTGATTATC
ATGTGGAGATCAGAAGCTGACCACTGGGTCGTGCATAGATGCGGACAACG
AGGTCAAGTGTTGGGTTGTCCCTGTTGGCCGGTGCGAGCATTTAACTTGT
GCCTATTCTGACCACCCCACCCACGTGGAACCAATTTGACAGGGTGCTAC
ACGCTGTCCTCGGCGAAGGGTGCCCGGTCGTCCCACAGGAGTTCGCTGAC
AGGTACGGCGACGAGCAGTGTCGGCAAGAGGGGGAAGATATGGACATGGC
GG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig10659:1117..3318-

>mRNA_S-dermatodea_contig10659.459.1 ID=mRNA_S-dermatodea_contig10659.459.1|Name=mRNA_S-dermatodea_contig10659.459.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1218bp|location=Sequence derived from alignment at S-dermatodea_contig10659:1117..3318- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCTCCAAGAAGCGACCTCGACACGAGGCAGTCGGCGGTGAAGCGACGGA
GGCGTGTTCGAAGCGTGAAGACGGAGAAGGCCGCCCTGTTGGTGTTGGTT
CCGCTGTAGACGCTGAAGCGAGAGAGGACGGCCCGCCCGGGAAAAGGAGG
CTTGCGGACCAGCCATCTTCGCAGCATGAAGGCTCCAAGAAGCGACCTCG
ACACGAGGCAGTCGGCGGTGAAGCGACGGAGGCGTGTTCGAAGCGTGAAG
ACGGAGAAGGCCGCCCTGTTGGTGTTGGTTCCGCTGTAGACGCTGAAGCG
AGAGAGGACGGCCCGCCCGGGAAAAGGAGGCTTGCGGACCAGCCATCTTC
GCAGCATGAAGCCGAGTCAGAGAACGCGGAGAAGGTGCATGAAGAGGTGA
ACGTGTTGTGCGAGGAGGTGCCACAGCGCGCACGGTGGTGGAACTCTCAA
GCTCTCTTACCTCGCTTCGTGGGAACTATCCTGGAGCTTCTTCACGAGGC
CGAGTCAGAGAACGCGGAGAAGGTGCATGAAGAGGTGAACGTGTTGTGCG
AGGAGGTGCCACAGCGCGCACGGTGGTGGAACTCTCAAGCTCTCTTACCT
CGCTTCGTGGGAACTATCCTGGAGCTTCTTCACGAGCTGCATGCACCAAG
CAACAGGGGCGGGAGGCGGTCAAGAGTCGAAGGGTGCGGCCCACGTAGAG
GGGCATCCTTGACGCAGATGCGCAAACAGTCTGAGCACCTGTTCACGCTT
CTGCTCGAGATAAGCCGTGTCAGCCCCGCGGAAACGCGTTTTCTCGTGCG
CGCGGGGGCGATTCCAAGCTGCATGCACCAAGCAACAGGGGCGGGAGGCG
GTCAAGAGTCGAAGGGTGCGGCCCACGTAGAGGGGCATCCTTGACGCAGA
TGCGCAAACAGTCTGAGCACCTGTTCACGCTTCTGCTCGAGATAAGCCGT
GTCAGCCCCGCGGAAACGCGTTTTCTCGTGCGCGCGGGGGCGATTCCAAG
GGTGCTACACGCTGTCCTCGGCGAAGGGTGCCCGGTCGTCCCACAGGAGT
TCGCTGACAGGTACGGCGACGAGCAGTGTCGGCAAGAGGGGGAAGATATG
GACATGGCGGGTGCTACACGCTGTCCTCGGCGAAGGGTGCCCGGTCGTCC
CACAGGAGTTCGCTGACAGGTACGGCGACGAGCAGTGTCGGCAAGAGGGG
GAAGATATGGACATGGCG
back to top