prot_S-dermatodea_contig10620.436.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig10620.436.1
Unique Nameprot_S-dermatodea_contig10620.436.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length139
Homology
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BLAST of mRNA_S-dermatodea_contig10620.436.1 vs. uniprot
Match: D7FJQ3_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJQ3_ECTSI)

HSP 1 Score: 220 bits (560), Expect = 6.910e-66
Identity = 105/130 (80.77%), Postives = 115/130 (88.46%), Query Frame = 0 
Query:    1 RKRARNASDGENRWDRIRAKVKLLLLKMRRDAHFIQVYQQDGWKSSGREKLKPTAELLKTKERVIGVKAELREVAKRLTEMNSGGTRWGGLQEDKEGCIRVDEVFCTKCSRGDSDDHDDILLCDYAGCFR 130
            RKR+RNASDGENRWDRIRAK KLLL KMRRD HF+QVYQQDGWKSSGREKLKPTAEL K +ER+ G++AELREV +RLTEMN GG RWG +QED EG I VDE+ CTKC +GDSDDHDDILLCDYAGCFR
Sbjct:    8 RKRSRNASDGENRWDRIRAKFKLLLHKMRRDTHFLQVYQQDGWKSSGREKLKPTAELEKARERIRGIQAELREVTRRLTEMNPGGLRWGAIQEDGEGNIEVDEIMCTKCGQGDSDDHDDILLCDYAGCFR 137
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BLAST of mRNA_S-dermatodea_contig10620.436.1 vs. uniprot
Match: A0A6H5KZT3_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZT3_9PHAE)

HSP 1 Score: 218 bits (554), Expect = 5.660e-64
Identity = 103/129 (79.84%), Postives = 114/129 (88.37%), Query Frame = 0 
Query:    2 KRARNASDGENRWDRIRAKVKLLLLKMRRDAHFIQVYQQDGWKSSGREKLKPTAELLKTKERVIGVKAELREVAKRLTEMNSGGTRWGGLQEDKEGCIRVDEVFCTKCSRGDSDDHDDILLCDYAGCFR 130
            KR+RNASDGENRWDRIRAK KLLL KMRRD HF+QVYQQDGWKSSGREKLKPTAEL K +E++ G++AELREV +RLTEMN GG RWG +QED EG I VDE+ CTKC +GDSDDHDDILLCDYAGCFR
Sbjct:  144 KRSRNASDGENRWDRIRAKFKLLLHKMRRDTHFLQVYQQDGWKSSGREKLKPTAELEKAREKIRGIQAELREVTRRLTEMNPGGLRWGAIQEDGEGNIEVDEIMCTKCGQGDSDDHDDILLCDYAGCFR 272
[Close]
BLAST of mRNA_S-dermatodea_contig10620.436.1 vs. uniprot
Match: A0A2P6VNL7_9CHLO (PHD-finger family homeodomain n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VNL7_9CHLO)

HSP 1 Score: 76.6 bits (187), Expect = 1.460e-13
Identity = 38/113 (33.63%), Postives = 65/113 (57.52%), Query Frame = 0 
Query:   12 NRWDRIRAKVKLLLLKMRRDAHFIQVYQQDGWKSSGREKLKPTAELLKTKERVIGVKAELREVAKRLTEMNSGGTRWGGLQEDKEGCIRVDEVFCTKCSRGDSDDHDDILLCD 124
            N +DR+ A+++  L K+R     ++ Y  DGW+ + REK+KP AE+ + K+++   K  +RE   R  +   G         D++G +  D +FC+KC   +SD+ +DI+LCD
Sbjct: 1650 NNYDRMLARLRAQLSKLRHAQALVEAYAADGWRGASREKVKPVAEIKRAKDQITKCKEAIRECV-RYCDDAEGDVPIPAELFDEDGELDTDHMFCSKCRGNESDEENDIILCD 1761
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10620.436.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FJQ3_ECTSI6.910e-6680.77PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KZT3_9PHAE5.660e-6479.84PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A2P6VNL7_9CHLO1.460e-1333.63PHD-finger family homeodomain n=1 Tax=Micractinium... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR12628POLYCOMB-LIKE TRANSCRIPTION FACTORcoord: 5..125
NoneNo IPR availablePANTHERPTHR12628:SF13HOMEOBOX PROTEIN HAT3.1coord: 5..125

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10620contigS-dermatodea_contig10620:4285..7924 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10620.436.1mRNA_S-dermatodea_contig10620.436.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig10620 4285..7924 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig10620.436.1 ID=prot_S-dermatodea_contig10620.436.1|Name=mRNA_S-dermatodea_contig10620.436.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=139bp
RKRARNASDGENRWDRIRAKVKLLLLKMRRDAHFIQVYQQDGWKSSGREK
LKPTAELLKTKERVIGVKAELREVAKRLTEMNSGGTRWGGLQEDKEGCIR
VDEVFCTKCSRGDSDDHDDILLCDYAGCFRWGGGVYSM*
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