mRNA_S-dermatodea_contig10620.436.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10620.436.1
Unique NamemRNA_S-dermatodea_contig10620.436.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10620.436.1 vs. uniprot
Match: D7FJQ3_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJQ3_ECTSI)

HSP 1 Score: 220 bits (560), Expect = 6.910e-66
Identity = 105/130 (80.77%), Postives = 115/130 (88.46%), Query Frame = 1 
Query:    1 RKRARNASDGENRWDRIRAKVKLLLLKMRRDAHFIQVYQQDGWKSSGREKLKPTAELLKTKERVIGVKAELREVAKRLTEMNSGGTRWGGLQEDKEGCIRVDEVFCTKCSRGDSDDHDDILLCDYAGCFR 390
            RKR+RNASDGENRWDRIRAK KLLL KMRRD HF+QVYQQDGWKSSGREKLKPTAEL K +ER+ G++AELREV +RLTEMN GG RWG +QED EG I VDE+ CTKC +GDSDDHDDILLCDYAGCFR
Sbjct:    8 RKRSRNASDGENRWDRIRAKFKLLLHKMRRDTHFLQVYQQDGWKSSGREKLKPTAELEKARERIRGIQAELREVTRRLTEMNPGGLRWGAIQEDGEGNIEVDEIMCTKCGQGDSDDHDDILLCDYAGCFR 137
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BLAST of mRNA_S-dermatodea_contig10620.436.1 vs. uniprot
Match: A0A6H5KZT3_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZT3_9PHAE)

HSP 1 Score: 218 bits (554), Expect = 5.660e-64
Identity = 103/129 (79.84%), Postives = 114/129 (88.37%), Query Frame = 1 
Query:    4 KRARNASDGENRWDRIRAKVKLLLLKMRRDAHFIQVYQQDGWKSSGREKLKPTAELLKTKERVIGVKAELREVAKRLTEMNSGGTRWGGLQEDKEGCIRVDEVFCTKCSRGDSDDHDDILLCDYAGCFR 390
            KR+RNASDGENRWDRIRAK KLLL KMRRD HF+QVYQQDGWKSSGREKLKPTAEL K +E++ G++AELREV +RLTEMN GG RWG +QED EG I VDE+ CTKC +GDSDDHDDILLCDYAGCFR
Sbjct:  144 KRSRNASDGENRWDRIRAKFKLLLHKMRRDTHFLQVYQQDGWKSSGREKLKPTAELEKAREKIRGIQAELREVTRRLTEMNPGGLRWGAIQEDGEGNIEVDEIMCTKCGQGDSDDHDDILLCDYAGCFR 272
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BLAST of mRNA_S-dermatodea_contig10620.436.1 vs. uniprot
Match: A0A2P6VNL7_9CHLO (PHD-finger family homeodomain n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VNL7_9CHLO)

HSP 1 Score: 76.6 bits (187), Expect = 1.460e-13
Identity = 38/113 (33.63%), Postives = 65/113 (57.52%), Query Frame = 1 
Query:   34 NRWDRIRAKVKLLLLKMRRDAHFIQVYQQDGWKSSGREKLKPTAELLKTKERVIGVKAELREVAKRLTEMNSGGTRWGGLQEDKEGCIRVDEVFCTKCSRGDSDDHDDILLCD 372
            N +DR+ A+++  L K+R     ++ Y  DGW+ + REK+KP AE+ + K+++   K  +RE   R  +   G         D++G +  D +FC+KC   +SD+ +DI+LCD
Sbjct: 1650 NNYDRMLARLRAQLSKLRHAQALVEAYAADGWRGASREKVKPVAEIKRAKDQITKCKEAIRECV-RYCDDAEGDVPIPAELFDEDGELDTDHMFCSKCRGNESDEENDIILCD 1761
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10620.436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FJQ3_ECTSI6.910e-6680.77PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KZT3_9PHAE5.660e-6479.84PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A2P6VNL7_9CHLO1.460e-1333.63PHD-finger family homeodomain n=1 Tax=Micractinium... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10620contigS-dermatodea_contig10620:4285..7924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score221.9
Seed ortholog evalue1.9e-55
Seed eggNOG ortholog2880.D7FJQ3
KEGG koko:K11657,ko:K12599
KEGG Pathwayko03018,map03018
KEGG ModuleM00392
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0008150,GO:0009719,GO:0009725,GO:0009733,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009937,GO:0009939,GO:0009966,GO:0009967,GO:0010033,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010646,GO:0010647,GO:0019219,GO:0019222,GO:0023051,GO:0023056,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0044424,GO:0044464,GO:0045893,GO:0045934,GO:0045935,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.sequence-specific DNA binding
EggNOG OGsKOG4299@1,KOG4299@2759
Ec32 ortholog descriptionPHD-type zinc finger and AT hook protein
Ec32 orthologEc-06_010620.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03036
Hectar predicted targeting categoryother localisation
Exons4
Model size417
Cds size417
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10620.436.1prot_S-dermatodea_contig10620.436.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10620 4285..7924 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924166.4702659-CDS-S-dermatodea_contig10620:4284..43921622924166.4702659-CDS-S-dermatodea_contig10620:4284..4392Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10620 4285..4392 +
1694079063.1887965-CDS-S-dermatodea_contig10620:4284..43921694079063.1887965-CDS-S-dermatodea_contig10620:4284..4392Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10620 4285..4392 +
1622924166.479079-CDS-S-dermatodea_contig10620:5913..59821622924166.479079-CDS-S-dermatodea_contig10620:5913..5982Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10620 5914..5982 +
1694079063.2014647-CDS-S-dermatodea_contig10620:5913..59821694079063.2014647-CDS-S-dermatodea_contig10620:5913..5982Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10620 5914..5982 +
1622924166.4884746-CDS-S-dermatodea_contig10620:6448..65941622924166.4884746-CDS-S-dermatodea_contig10620:6448..6594Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10620 6449..6594 +
1694079063.2105472-CDS-S-dermatodea_contig10620:6448..65941694079063.2105472-CDS-S-dermatodea_contig10620:6448..6594Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10620 6449..6594 +
1622924166.5011854-CDS-S-dermatodea_contig10620:7830..79241622924166.5011854-CDS-S-dermatodea_contig10620:7830..7924Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10620 7831..7924 +
1694079063.2209094-CDS-S-dermatodea_contig10620:7830..79241694079063.2209094-CDS-S-dermatodea_contig10620:7830..7924Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10620 7831..7924 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10620.436.1

>prot_S-dermatodea_contig10620.436.1 ID=prot_S-dermatodea_contig10620.436.1|Name=mRNA_S-dermatodea_contig10620.436.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=139bp
RKRARNASDGENRWDRIRAKVKLLLLKMRRDAHFIQVYQQDGWKSSGREK
LKPTAELLKTKERVIGVKAELREVAKRLTEMNSGGTRWGGLQEDKEGCIR
VDEVFCTKCSRGDSDDHDDILLCDYAGCFRWGGGVYSM*
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mRNA from alignment at S-dermatodea_contig10620:4285..7924+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10620.436.1 ID=mRNA_S-dermatodea_contig10620.436.1|Name=mRNA_S-dermatodea_contig10620.436.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3640bp|location=Sequence derived from alignment at S-dermatodea_contig10620:4285..7924+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGAAAGCGTGCCCGTAACGCCAGCGACGGGGAAAACCGGTGGGACAGGAT
TCGCGCCAAGGTCAAGCTCCTTCTGCTGAAGATGCGTAGGGACGCCCACT
TCATTCAGGTACAAGCCGGCCAGCTCACTCAGCTCCGCTCGGAGGAGCTC
CCGCCCTGCTTGTGATGCTCTGACTTATTGTATCTATGTGGCGGTTTTAG
GGTGCACGGGTTGGGTGTTTGGTTGGTTTGCTTGCTATACATAGTCGATT
GGTTCGATCAATAGCCCGCGCGTCAGTCCGAAAATATGACTTTCCGCATC
TGTCCGCCCTTCGCAAAGGCGTCTTGGGCCGTCATCGCTGCCCAATGCTG
TTCCTGCCCAGCGATGTGAGTAGGGCGTTGGGCAGCTAGCTGTTGTACCT
CTCTTGCATCTATATATGTACGAAGTATCGTATGTTCCGCCACGATTTAC
TGTAATGTTGTGGGTTTGATCGCCGGACGCGCAGCGCAGGCGCACCCCGT
GGCGCGCCCCGTGGTATTGTCCCACCGATCAAAAGCCCTGGGGGAGAATG
TGCGGCATCGCCCGTGTTGTGGCCGTCCTACCCTAAAAGTGTCTGCAGTA
TTACAGTAAATACTATAGTACTGTTGTAGCACATGCATAGTATTAATAGT
AGTGGACGCCATTTTTTTTTTGCCTTTTTTTTTTTTCCTGGCGTTTTGTT
TCCTCCTCGGGTCTGTGATACAAATACTCGCCTTCGATTATCACTGTCGC
GTGTAATATGTCATCGGGTTCGGCAGAGCTTTAGCCCCGCAGCTCGGCTC
GATGCTCTCGAATCACCTGGTCGGTGGAAGATATATCTCTTGCTTGATTG
TTTGATTGATTAATTGATTATTGATTGATTGGTTTGATTGATTGATTGGT
TTGATTGATTTGAGTGTTTGTTTGATTGTTTGATTGATTTTACTGATTGA
TTGATTTTATTGATTGATTGATAGATTGTTTTGATTGATTAATTGATTTG
ATTGATTGATTGGTTTGATTGATTTGATTCATTGATTTGATGGATGATTG
ATTGATTGATTTGATTGATGTGATTGATTTGATTTGATTGATTTGATTGA
CTTGATTGATTTGATTGATTTGATTGATTTGATTGATTTGATTGATTTGA
TTGATTGATTGATTTTTTTATTGATTGATAGATTGATTGATTGATTTGAT
TTGCTTTGATTGATTGATTGATGAATTGATTGATGAATTGATTGATTGAT
TTATTTTATGGATTGATTTGAGTGATGATTGATTGATTGATTGATTGATT
GAATAGTTTAATTGATTTGATTCTCGCACTTAAAACCGACCGGCCAACTG
ATGGTTGCCGACCCCTCTCGCTCATGGTCATATGACCACATCCACAGATC
GAAAGAAGAACCCCTACGGAATAACCTATATAAATTCATACAACGGAGGA
ATTGACACAGACTAAGTCTCGGAAACAGAGGGGATATGCCTCAGAACTAC
ACTTTAATCGCAGGACTTGCCAAAAGAGAAACACCCCCTCCCTTCTCCTC
ATGGCGGGGAACATATGTTGAGCACCATGTTTTACGTGTCTTCCCCCATG
CTATCCGTGCTACCTCACCCTGGTGAAAGGTGTACCAACAGGACGGCTGG
AAGAGCAGCGGCAGGGAAAAGCTTAAGCCGACGGCTGAGCTTTTAAAGGT
GACAGCTACTCTGAAACATTGCTCAGACGTGGCCTTAGGTCCTGGGTCAC
TTTGTTTGTGTCGGCATACTTAAGTACTTGCAGGAGCCCGCAGGGGGGTT
TGCTCGTTGTAGATGTAGATGCAGTTTTATTTCTCGTTTTCTGGTTGGTT
TGGCGTTTTGAAAGTAGCCTGTGTGGGAGATTTAAAGCCTCAGCTACAGC
TGTACTGCAGAGCCGTTTTATGCTTGGTTTAAGATTTGCAGAAGCCTGTG
AGGGGGATTCAATTTCTTCGTACAGCAATAACCGCGTTCTGCTTGGGTTT
TCACGCCATGCTCCGAAGTACACCGGCCAAAATTTTGTTTGTTGCCCGCG
GCTTGGCGCTGTTAACTCCGCCAGCGTTTGTGCCAGCAAAACTGCCCTGG
TTATATATCAATAGACACCGTTGTTTTTGAACAAAAATATGTTTCGTTCC
TTGTGCTCCGACAGACGAAGGAGCGTGTCATCGGCGTAAAGGCGGAGCTG
CGGGAGGTGGCCAAACGCCTCACGGAGATGAACTCCGGTGGCACGCGATG
GGGGGGGTTGCAGGAAGATAAGGAAGGCTGCATCAGGGTCGATGAGGTTT
TCTGCACCAAGTGAGTTGGTTCAGGGACATGGTGGGTCGTTGCTAACTCT
CCTCGTGTGCCCGATTCGTCGTTGGGTGGATGCAACTGAATCGTGTGCTT
TGGGTGATAGCTCCTGGCTGTGGTACGGACAAAACTTAAAAAGGAGATAT
GATAAGATCAAATTCGAGACGTAACGGGCTGCAAAACTCCTCTGAAGAAT
GGAGATTAAAACTAAAAATTAAAAGTGCAGCGGCAGCGGCGGCGGTATCG
CATTAATCGCATACAAGTAAAAATCCGAGAAATCGGCGAGCTGCGGGAGT
GCCGAACCCAATGCGCGTTAAAAAGCAAAGGTGAGAACCGGGGATCCCTT
GTGACCACAGATGGACCTCGGAAAAGCAAGTCTATCATATGTGTGCAAAA
AAAAACAAAAAGTAGAAGTATGAGGACTGTATGGGTCGTTCTGAGTTGCA
CGAGCTCTTGTGTACGACATGTCTACCATGCTGCTGTCGTAGGCAGGACC
GCGTAGAAACGATTAAGGACTTATATCGAATCGAAGCTCGTTTTCTCGTG
TAAATGGACGGAATGCTGTCTAAGTGGCCATATCCTTATCATGGAGCGTT
ACCTCATCGGCTGGTACCACGTCCTCGCCTCGACCAATCGTGTGTCGCAC
AGCAGCCGAGCCGCAAACTGCTTATTTCGCACTATAGTAGAGTAGGCCCT
CGCAGGCCGCCGAGGTCGATCTGCTAAACAATATACTGATTTCAAAAACG
TAGGGCGAGCGTTGGGGTCTCCCACCTTGAAAGAAGGGAAGATGGTCCAA
GCTGTTTAACACACCTATGTTAAACACACCTATGGAGGGTTACGTTGCGT
CTGATGCCATTGTTTCTTATGCCATTTGTGTTGTTTTTTAACAGGATCGC
GGTATCATACAAGTGTCTTTATGCCATCTTGAGCAATATCCTGGTAGCGT
GTAGCTTTGATATGCTTTGTGAGCCAAGAAAGATTTGTCTCTCTACTACA
GTATTAATACATACATTCTTTAGTCGTAATGATTTTTCTCTGTTGTTTCG
AACGGGACCCCTTCCCCCTTCTGCTCGTCCTGCTGTTAGCTTGTACGCCC
ATACTATTACTATTGTACTGAACAGGGAGTTAGTTCTCTTTGTACCTTCT
TATTTAACCCGCGCCCCAAATGCCTCACATCGAAAACGGGAGTTCACGCA
CGAGCTTTCCCTGCCTTAACGTGACGTTTTTCTCCCGCGCGGATAGGTGC
AGCCGGGGGGACTCTGATGACCATGATGACATCTTGCTGTGTGACTACGC
GGGTTGCTTCAGGTGGGGGGGGGGGGTGTACTCCATGTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10620:4285..7924+

>mRNA_S-dermatodea_contig10620.436.1 ID=mRNA_S-dermatodea_contig10620.436.1|Name=mRNA_S-dermatodea_contig10620.436.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at S-dermatodea_contig10620:4285..7924+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGAAAGCGTGCCCGTAACGCCAGCGACGGGGAAAACCGGTGGGACAGGAT
TCGCGCCAAGGTCAAGCTCCTTCTGCTGAAGATGCGTAGGGACGCCCACT
TCATTCAGAGAAAGCGTGCCCGTAACGCCAGCGACGGGGAAAACCGGTGG
GACAGGATTCGCGCCAAGGTCAAGCTCCTTCTGCTGAAGATGCGTAGGGA
CGCCCACTTCATTCAGGTGTACCAACAGGACGGCTGGAAGAGCAGCGGCA
GGGAAAAGCTTAAGCCGACGGCTGAGCTTTTAAAGGTGTACCAACAGGAC
GGCTGGAAGAGCAGCGGCAGGGAAAAGCTTAAGCCGACGGCTGAGCTTTT
AAAGACGAAGGAGCGTGTCATCGGCGTAAAGGCGGAGCTGCGGGAGGTGG
CCAAACGCCTCACGGAGATGAACTCCGGTGGCACGCGATGGGGGGGGTTG
CAGGAAGATAAGGAAGGCTGCATCAGGGTCGATGAGGTTTTCTGCACCAA
ACGAAGGAGCGTGTCATCGGCGTAAAGGCGGAGCTGCGGGAGGTGGCCAA
ACGCCTCACGGAGATGAACTCCGGTGGCACGCGATGGGGGGGGTTGCAGG
AAGATAAGGAAGGCTGCATCAGGGTCGATGAGGTTTTCTGCACCAAGTGC
AGCCGGGGGGACTCTGATGACCATGATGACATCTTGCTGTGTGACTACGC
GGGTTGCTTCAGGTGGGGGGGGGGGGTGTACTCCATGTAAGTGCAGCCGG
GGGGACTCTGATGACCATGATGACATCTTGCTGTGTGACTACGCGGGTTG
CTTCAGGTGGGGGGGGGGGGTGTACTCCATGTAA
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