prot_S-dermatodea_contig1062.432.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig1062.432.1
Unique Nameprot_S-dermatodea_contig1062.432.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length158
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig1062.432.1 vs. uniprot
Match: D8LK29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK29_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 5.520e-7
Identity = 28/49 (57.14%), Postives = 35/49 (71.43%), Query Frame = 0 
Query:  106 VPFFGRQDAESAKRMASHLEHRVDEYRQDLVKVVQGLDLIITRLEEAAA 154
            +PFF   + + A    SHL H+V+EY+QDLVK VQ LD+IIT LE AAA
Sbjct:    3 IPFFRSGNDDDALSRWSHLNHKVEEYKQDLVKAVQSLDMIITTLESAAA 51
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1062.432.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LK29_ECTSI5.520e-757.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 114..134
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 25..45
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..24
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 46..158
NoneNo IPR availableTMHMMTMhelixcoord: 23..45

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1062contigS-dermatodea_contig1062:2075..8783 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1062.432.1mRNA_S-dermatodea_contig1062.432.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig1062 2046..8783 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig1062.432.1 ID=prot_S-dermatodea_contig1062.432.1|Name=mRNA_S-dermatodea_contig1062.432.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=158bp
MPLVIYGVPGRRRLSPLHPCCSLPLLPLLIAGGTFALLLVIDGLVGSHRT
PRLADNEPLDHGCSRWQTTTRMDEPKSYTVGKIELEEDPFSTKTRANPGK
DHVAPVPFFGRQDAESAKRMASHLEHRVDEYRQDLVKVVQGLDLIITRLE
EAAASAGT
back to top