mRNA_S-dermatodea_contig1062.432.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1062.432.1
Unique NamemRNA_S-dermatodea_contig1062.432.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1062.432.1 vs. uniprot
Match: D8LK29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK29_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 6.900e-7
Identity = 28/49 (57.14%), Postives = 35/49 (71.43%), Query Frame = 3 
Query:  345 VPFFGRQDAESAKRMASHLEHRVDEYRQDLVKVVQGLDLIITRLEEAAA 491
            +PFF   + + A    SHL H+V+EY+QDLVK VQ LD+IIT LE AAA
Sbjct:    3 IPFFRSGNDDDALSRWSHLNHKVEEYKQDLVKAVQSLDMIITTLESAAA 51
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1062.432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LK29_ECTSI6.900e-757.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1062contigS-dermatodea_contig1062:2046..8783 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size505
Cds size474
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1062.432.1prot_S-dermatodea_contig1062.432.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1062 2075..8783 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924166.249839-UTR-S-dermatodea_contig1062:2045..20741622924166.249839-UTR-S-dermatodea_contig1062:2045..2074Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1062 2046..2074 +
1694079063.0841737-UTR-S-dermatodea_contig1062:2045..20741694079063.0841737-UTR-S-dermatodea_contig1062:2045..2074Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1062 2046..2074 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924166.2623758-CDS-S-dermatodea_contig1062:2074..24941622924166.2623758-CDS-S-dermatodea_contig1062:2074..2494Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1062 2075..2494 +
1694079063.0921433-CDS-S-dermatodea_contig1062:2074..24941694079063.0921433-CDS-S-dermatodea_contig1062:2074..2494Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1062 2075..2494 +
1622924166.2709875-CDS-S-dermatodea_contig1062:8729..87831622924166.2709875-CDS-S-dermatodea_contig1062:8729..8783Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1062 8730..8783 +
1694079063.0999296-CDS-S-dermatodea_contig1062:8729..87831694079063.0999296-CDS-S-dermatodea_contig1062:8729..8783Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1062 8730..8783 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1062.432.1

>prot_S-dermatodea_contig1062.432.1 ID=prot_S-dermatodea_contig1062.432.1|Name=mRNA_S-dermatodea_contig1062.432.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=158bp
MPLVIYGVPGRRRLSPLHPCCSLPLLPLLIAGGTFALLLVIDGLVGSHRT
PRLADNEPLDHGCSRWQTTTRMDEPKSYTVGKIELEEDPFSTKTRANPGK
DHVAPVPFFGRQDAESAKRMASHLEHRVDEYRQDLVKVVQGLDLIITRLE
EAAASAGT
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mRNA from alignment at S-dermatodea_contig1062:2046..8783+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1062.432.1 ID=mRNA_S-dermatodea_contig1062.432.1|Name=mRNA_S-dermatodea_contig1062.432.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6738bp|location=Sequence derived from alignment at S-dermatodea_contig1062:2046..8783+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTCACGGTCTGCCTACTGCCTGTGCTGCATGCCATTGGTGATATACGGC
GTCCCAGGGAGAAGGAGACTGTCTCCGCTACATCCCTGCTGCTCCTTACC
ATTGCTTCCGCTGCTGATCGCAGGCGGAACGTTTGCTCTTCTGCTGGTTA
TCGACGGCCTTGTGGGATCTCACCGCACACCGCGCCTTGCAGACAACGAG
CCGCTTGATCACGGCTGTTCCCGTTGGCAAACGACGACCAGAATGGACGA
GCCCAAGAGCTACACTGTCGGGAAGATAGAGCTGGAGGAGGACCCATTCA
GCACGAAAACCAGAGCTAACCCGGGCAAGGATCATGTCGCGCCGGTTCCC
TTCTTTGGCCGTCAGGACGCCGAGAGCGCGAAGAGGATGGCGAGTCACCT
CGAGCACAGGGTGGATGAGTACCGCCAGGATCTCGTCAAGGTTGTGCAGG
TGCGATCATTTGTCACGAACCCGAAACAAATGTCACGTTGTCACCACGTG
TATACAGAGTACCTGTTGTATATGTACGGGATGCCAGTTTTACTGTAATG
CATTTTGCAAATTGCAACTTTGCGGTATGATGCTGCTGTGCAAAGATAAC
ATGTTGCCTCGACAGCAGGAGTATTTGCCGGCAGAGGTTCGTTCAGCGAT
CCACAGCCCCAACGGTGTGCGGATTGCCGGGAGTTTTTATTTTATTTTGA
TTTGATTTGATTTGATTTGCACACGTATGATATAGCCGATCGACCCGACT
TGTGGTCAGACACGCAAAGAGTCAAGGAGAAAAATAACTATTAATAGTCA
TAATTCTACTTCTACTAGGGATGTTTTCGTATATACGTTGAACTACTTTC
AGTTTCCCCTGAACCAGTGTGCTTGTGAGTTAGGGATGCGCCAGGTACAT
GGGAACTTGATTTTGTTTGTTATAAATATACGTTGAACGATGGGGCACAT
CAGCAGCCTGTTCCAGGCGACAAGAACTCATAACCTCTTTGAGCTTTTGT
TCCCGGATGACCAATTAAACCCACAAAGCAAGGTTACACCAATACGTGCG
TGCATCCCCCAGCCAGAAGGTCAAGGTTCCACACTGCCCCCCCCGTAGTA
TATGCCTGAGTTCGACCTCCTGGATGCTACGCTGTGATCATATAATATAC
CATATGATAGTTCGACCGTCTTTACGTTGAGCTTTATACATACAAGTATC
ATGTCTGCATATTTGGCCACGTGTTTGGCCACTCTACACCGACGGCCGTA
GACAACCTTTGTTTGAGCGCAGTTTCTTGTGCCATGTCGATTCTGTCCCT
ATAGCCAAAATCGCCTCCCAGAAATTAGAGCCGGTGCATCAAAGTTTGAT
TTTCAGCTACTGTATCAGGTAGTAGAAGTACTGCCGAGAGTCAACTTCCG
CTTGGGTAAATTCTCAGTTTACCTGGAGAACATTACTGTTCGAGAACAAC
AGCAGTCTATTGTCCGCAGGGACTGACTGGTCCTACGAATGGGGTACAGG
TTCTAGAAGGGTTCTATGGTTCCTCAGGACTGTCCCTGATATCCGAGTTC
GGACGAGTGGTGAACCTATACACATACACTTTACTCACTCTCTCCAGTTT
TCCTGCTTTGACCTTTGAAGCGCTACTTTCAACGCATCTTGACAGCCACT
TAATACTGACTGTGTCTCCACGAGACACAACCACCAAAGCATATAGCCTT
CCAACAGGTTTGGAGCCTCGGTTAGTGATCGGCACATCGCTCTACACCGC
GGGATCGACTTTCTCCACGAGTTCGTTACGAATATCCAAGCCAGTTCTCC
GAGTGTACCAAGTGCTGCATGAGTTCGAGTTTGCAGTTATTTCCTCAACA
CCCAGTTCGACCGAATATAATAACAGCAAGGCCCAAACATGCTGGATACC
ACTATTCACCATTCGAAAGTCAATATCATCGGTCACGTAGCTCATCCACA
GCATCAGCAAGTTGGACGGCGCTGATTTCGTACCATAGTGGAGAACCCTC
ACCGCAACTGCAAACGTGCTCGATCCAGAATTTTCCAAACTTCTTGGCTG
CCAACTGCGCCCTGAACCAGTTGTATCGGGCGAGGCGTGGTCGAGGCAGA
CCCGCACCCCGGGCTGAACCGGCGGCGACCTGGAGCTTGGCGCAAGTCGA
CACTCAAGACGGCGAAAATGCGCCAACCGGCGGTGACCCTGGCGCCGACG
GCGATGGCGGCGGACCACAGGATCAGTCGGAATTTTCCTCGGCAACAGTC
CCGTCGACGGATCAACATGTCTCGCCAAGGGAGACGAGATCGAGCAGTGG
ATCGCCTACAGCTAGCAGCTCTACAGCGTCCTGCTCCTGCTCCCCAAAGG
AGCGGCCAAGAGCTTCCTCATGCGGTATCCCGGGAGACCCGGAGCGGACG
AACGCTCCAACGGCCAGGCCGCGTGGAACGACATGGTGGAGAAGTACCTG
AAATTCTCGATGTAGCGCCGCCATCTTTTAATGCCCCAGCTCAACAGAGA
GGTGATGGCGCCCGACCAAGACCCCGACGAGTACCTGACTGAGGCCTGTC
ACCTCCGCGACGAGCTCGAATACATCGGGGAGACCTTTTCATCAGAGCAC
CGTATCATCGAATCATTCTAGAAGGGCTAACGGAGGACTACGACCAGATC
AAGTTCGCCGCCGAGAGAGACCCCGACATTTGGTTGAGAGGCATCGGGGA
CACAACGCGCAACACGTACGGCAACTGCATGGCAAGCGGGAATGCTACAC
CTTCACGCAAGAAAGGACGAACATCGGCAATGATGGGCACGACATCGCCA
TATTAAGGCTTCAAAAGCAACGGCAACTATTGCCGTTAGTATGGCCAGCA
CAGGGACGAGTGCAACAAGCTCAAGCGGCTTGGTAGAACACTTGATCTAC
CAACGGCGCGTCATGTTCAAGAAGCTAGTGGTGCAGCGCCCGTAGCACCT
ATTTACATTACAAATCCGAATGCCGCTTTCAGCAAAAACAACAGCGAGCA
ACAATGGAGCAAACGGCGGAGGCCACGGCGGCAACTACCGTGGGGGTAAC
ACCGGCGGTGACGATGGCAGCAGAAAAAACGGCGGTGACGACCGTAACTT
TGGCAACAACGGCGGCGACGGAAACCGCCGTGGAGGACGACCAAACCAAT
ACAGTAGTTGCCGCGGCCGCCACTACTCCCGACGCGAAGACTCTGGTATC
TGCTCCTGCTTCCGACTACAAGCGAACGGACCACCGTCACTTTCCGTGAA
GTGCGGCATCTCCACCGGTACACACCACCTACTTGGCACCAAAGGACATC
GGCAACACGTTCCTCGCAGCGTCTACTACCACCGCAGCATCCGTCAAGTT
CTGCATGACCTCCCACTGCGGTCACACTTCGTGGACAACCAGCTCCTCGA
AGACATCAAGGAAGGATAGGGGACTACGTCAAGCTTGACCGTTGGCTGTC
ATAGTCGTCGCCGGCCGCAACATTATTCACGGCGTCACCCCTCAACGTCC
GTGTCAACGACCAACACGCCAACTCCCACTCCGTCCGGCTGCCGGTAATG
GTCGTGCCCGGGCTGGGCGCCACCTATTTTCAGGGGGAATTGCGGCATTG
CGGGGGCTTAACAAGGACATCTCCTAGCAGTCGTACGTGGACATGAGATA
TAACAATACCCCCCTTCGCAAGGACTGCACCTTCCGTACGATCGACCACC
TCAACCTCGAGCTGGCACCGGGCCACATCAACACATAGTCAGCGTTTCCA
GTGCAACTCGCTACCAGCGGAATCTGCATAAAGCACAATACCTTTTCGGG
GACGGCGGCATGCGTACTGCCCAAGCGTTGACATCTCTGGCAGCAACCAT
CCTTGTGGCGAAGAAACGCGGCCAGCTGCGGCCATGCCTGCTAGCACAAC
ACCTTTGACTCCGCCATGTCGGCGAACGGGGGGCCTAAGGTTTGGCACAA
GCGTTTAGGCCACCCCATCGAGCGCACCATGGGGGGGCGGGGGGGGGGTG
TCACTGAGATGGGTGTCAGGTATTCCGACTCTCTGGCCGCTTTCGACACG
CGCAAGATGAGCACCCAGCAGCCACACCCAAAGACTGCAGACAATAGCCG
GATCACCGGCTTGTTGGGACCCATTACGCCAGCGGCGCGCAGGGACCAGC
GCTACATGTCCAAGTACTGTGACCACTTCAGCAAGTCCAAGGCCGTCTAA
TTCACTGCGAAGAGTTCGACGTGCTGCCAACGCCAGTCAAGTTCGTTCAA
GACTTGGCCATGCCGCTCGGGCTCCGACTTCAAAACCTGTCCTCGGATGG
TACCGGTGAATTCCTCGCCGGCCACTACCGCGGCTACTGCAAAACCACCG
CCGTTGTACGGGAATTCAGCTCGCCACACACTCCGCAGCAGAGCGGCTTC
AGCGAGCGCGACGAGCGCACCGTTATGGACATGACTCGCCGTCTGCTAAA
CGAGGCAGGACTACCGAATGTAATCTGGCAGGAAATTGCGTCCACGGCGG
TATGTCTGCTGAACCGTCTCCCCAGCAAAAAAAACATCTCTATGGTTGGC
GGCAATCCCCGGCAGCAGTGGACGGCACCATCGACGGAGATCTACAGAGC
ATCGGGTTCACCCCTACGGTCAGCGACCCGTGTGTCCACGTCGAGGGAAG
CGGAGACGCCTTCTTGATGCGCACGCATTCTGTTGACGATCTACTCATCA
GGGGACCCAAGGAAGGCGTCGTGGCCATATTCGTTCGACGCTCATGGCCA
GGTTTACCTTGATGAACCTTGGGAACGCAACTCAAAATCTCGTGATCGAC
ATCATTTAGAACAAGGGGCAAGTCGCCGTCGTCTTTAGTTAACACCGCTA
CGTGCTATCGCTTCCGGAGAAATTCGGCATGGGCAGCTGCAACCCCGCCC
ACACACCAGACATCGGCAAGGAGCTGACGGCGGACCCAGAAGGAAGCGTA
CAGCTCGAGGCGGGGGGCGTCAAGGGCTACCAGGCGATCGTTGGGAGCCT
CGTCTTCTTGACTCAGTGCACCCGGATAGATATCACCTTCGCTGTTTCAC
AAGCGGCGCGAGTTTATGTCGAAACTTACCATCGTCCACATGGGTGCGCG
CCTTACGCTATCTGCGCGGCACGCCGGATCTGCTCATTTCTTACAGGTAT
GACGGCAACTTCGAGCTCATCGGATTCTGCGATGCCTCTCACGGCACCGG
TTACCCGGACAAAGCAAGGTCCACGACGGGGAGTATGCACTTCCTGTCTG
GTGGCGTTGTGCAGTTCAGCTCCAGCCTAATAAAATTTACGGGCCAGTCA
CCTACCGAAGCGGAATTGATAGCCATGAACACCTACGCTAGACAAGGCGT
TTACCTGCATGGCATTGTTGGAGAGGTTTTTGGATGGAAGAACGCCCGCA
ACGTTCGCATCTTCTGCGACAAAAAATGAAGTGTTGCTGCCGAGAGGATA
GGGAAGCTACGGGAGCAGGTTAAACACCTGGCCATTCGCTGCGCCGGGCT
GCGCAACTGAATAAGCAACAAGCAGCTCATCGTCGACTAAGTCTCCACCA
AGAATCAGCTCGGCGACAAACTCACCAAATTCTGCGTAAGGCCCATCCTC
ACTGACCCTCTCCAGGCCACCCCTGCATTCGTGGGTACGAGGCCCTAAGG
GAGTTCCAGCACCCTGAGAGCAGCGCACCACCCTTCGAGACTACCTCATC
AATTCACCGACCCCAGGCTTCACGGTCTGCACGACCGGCGCGAGTACACG
ACCTTCTCGGACTTCATGTAGAGCTCATGTAATTTGACTTCATTTTTTGT
TGATTTAGTTGGGGCGGAACGAGTTTGCCAGCCTCAGGGCTGAAATCCGC
AGTTATACGTGCTTTTCACGTCTCTAGTATATCTGGTTCGTTCAGCTGGA
TGTCAGCCAATGGTATTCCTCCGAGTATGGATACGGTGTGAGCTGCCTAA
CGAATGTCGTGCATTGCTCTTTGGAGTTTTTTATAAATTTCTTGCTACGA
GTAGACCTCAATCGAGGGGGCGTGTTGGAATAACACGAACCTCACTTCTG
CCAAATTTAAGGCAGTGCATTCAAGTATTCTCCGCTATCGGGTAGAACTA
CCTTTCGCCGAGTGAAGGACCGGTTGGGTAAGTTCTTCGTTTGCTTAGAG
AGCGTTACTGTTCGAGAAACAGTTGAAGTGCCCAAAGGAGTCATCTTAGG
AATTGGGTACAGTTTATAGAAGGGTTCCATGATTCCTCAAGGCTGTCCCT
GCTATTCGAGTTCGGACGAGCGGTGGACCTACCCGCTCTCCTCGCTCTCT
CCAGATTGCCTGCTTTGGCCACGTAAGCGCCACTTTCAAACCATAACGTT
TCCTTCACGTAAGTATGCTTGACAGCCAGTTAGTGCCGACTCCACGAGAC
CTCACCACGCAAGCATACAGCCTTCCACTGAACCCAACTATTTCTAAATC
CCCTTGGCACAAAGTGTTTTAATACTGCTGTTGTGCTTGCAATGTATTAT
AGAAGAGAACCAGGTCCGGAAAACAGCGGTTACACCTTGTTCAAAGTGCG
CCAATGGGTCGTTGTTTCGTTATCTCTCGCTCCCCTTGTTCGTCGGAAGG
CAGCGTTCCGCTTTTTCTTCCAGTCTATACATCGCGGTTAGGTAAACAAC
TAAACACGCACGCTTCGTTTCCTGCTCCACCCAGGGGTTAGACCTGATCA
TCACCCGCCTCGAGGAGGCTGCGGCAAGCGCGGGCACG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1062:2046..8783+

>mRNA_S-dermatodea_contig1062.432.1 ID=mRNA_S-dermatodea_contig1062.432.1|Name=mRNA_S-dermatodea_contig1062.432.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at S-dermatodea_contig1062:2046..8783+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCATTGGTGATATACGGCGTCCCAGGGAGAAGGAGACTGTCTCCGCT
ACATCCCTGCTGCTCCTTACCATTGCTTCCGCTGCTGATCGCAGGCGGAA
CGTTTGCTCTTCTGCTGGTTATCGACGGCCTTGTGGGATCTCACCGCACA
CCGCGCCTTGCAGACAACGAGCCGCTTGATCACGGCTGTTCCCGTTGGCA
AACGACGACCAGAATGGACGAGCCCAAGAGCTACACTGTCGGGAAGATAG
AGCTGGAGGAGGACCCATTCAGCACGAAAACCAGAGCTAACCCGGGCAAG
GATCATGTCGCGCCGGTTCCCTTCTTTGGCCGTCAGGACGCCGAGAGCGC
GAAGAGGATGGCGAGTCACCTCGAGCACAGGGTGGATGAGTACCGCCAGG
ATCTCGTCAAGGTTGTGCAGATGCCATTGGTGATATACGGCGTCCCAGGG
AGAAGGAGACTGTCTCCGCTACATCCCTGCTGCTCCTTACCATTGCTTCC
GCTGCTGATCGCAGGCGGAACGTTTGCTCTTCTGCTGGTTATCGACGGCC
TTGTGGGATCTCACCGCACACCGCGCCTTGCAGACAACGAGCCGCTTGAT
CACGGCTGTTCCCGTTGGCAAACGACGACCAGAATGGACGAGCCCAAGAG
CTACACTGTCGGGAAGATAGAGCTGGAGGAGGACCCATTCAGCACGAAAA
CCAGAGCTAACCCGGGCAAGGATCATGTCGCGCCGGTTCCCTTCTTTGGC
CGTCAGGACGCCGAGAGCGCGAAGAGGATGGCGAGTCACCTCGAGCACAG
GGTGGATGAGTACCGCCAGGATCTCGTCAAGGTTGTGCAGGGGTTAGACC
TGATCATCACCCGCCTCGAGGAGGCTGCGGCAAGCGCGGGCACGGGGTTA
GACCTGATCATCACCCGCCTCGAGGAGGCTGCGGCAAGCGCGGGCACG
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