prot_S-dermatodea_contig10609.423.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-dermatodea_contig10609.423.1
Unique Name	prot_S-dermatodea_contig10609.423.1
Type	polypeptide
Organism	Saccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length	219

Homology

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BLAST of mRNA_S-dermatodea_contig10609.423.1 vs. uniprot
Match: D8LEF3_ECTSI (Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF3_ECTSI)

HSP 1 Score: 340 bits (872), Expect = 1.460e-104
Identity = 171/205 (83.41%), Postives = 189/205 (92.20%), Query Frame = 0

Query:   14 GGEHTISRNARLTLMLEDELPSCHNQERVDDFAKKFCYVNSKGARKRLVAALFGVPRQDLDLLPMYARLVAILDKQAMKSIAPALLDELRSHFRYFLRKKAPGQIDHRIKNVRFIGELVKFRVAPPVVAFQCLKACLDVFSSLSVQTMTSLLETCGRFLYRQKLTQQRMRSFLSVMMKLKKAKNLDPRLEALIDNAFYTCCPPPR 218
            GGE+ +SRN+RL LMLEDELP+CHNQERVD+FAKKFCYVNSK ARK+LVAALF VPRQ  DLLPMYARLVAILD QAMK+IAP L++ELRSHFRYFLRKKAPGQIDHRIKN RFIGELVKFRVAPPVVAFQCL++CLD FSSL+VQTM +LLETCGRFL+RQKLT QR RSFL+VMMK+K AKNLD RLEA++DNAFYTCCPP R
Sbjct:  860 GGEY-MSRNSRLMLMLEDELPNCHNQERVDEFAKKFCYVNSKSARKKLVAALFNVPRQARDLLPMYARLVAILD-QAMKTIAPLLIEELRSHFRYFLRKKAPGQIDHRIKNARFIGELVKFRVAPPVVAFQCLRSCLDDFSSLAVQTMAALLETCGRFLFRQKLTHQRTRSFLTVMMKVKSAKNLDKRLEAVVDNAFYTCCPPER 1062

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BLAST of mRNA_S-dermatodea_contig10609.423.1 vs. uniprot
Match: A0A835YRH9_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRH9_9STRA)

HSP 1 Score: 213 bits (543), Expect = 3.410e-60
Identity = 108/189 (57.14%), Postives = 138/189 (73.02%), Query Frame = 0

Query:   29 LEDELPSCHNQERVDDFAKKFCYVNSKGARKRLVAALFGVPRQDLDLLPMYARLVAILDKQAMKSIAPALLDELRSHFRYFLRKKAPGQ-IDHRIKNVRFIGELVKFRVAPPVVAFQCLKACLDVFSSLSVQTMTSLLETCGRFLYRQKLTQQRMRSFLSVMMKLKKAKNLDPRLEALIDNAFYTCCPP 216
            L +ELP+C N+ER D FA KFC+ NSK AR++LV ALF  PRQ LDLLP YARLVA LD Q ++ IAPAL D+L+  FR+ LRK+   + ID + +NV FIGEL+KF+VAPP+VAFQCLKAC   F+  +V+    LLE+CGRFLYR K T  R  S+L ++ + + AK+LD R E +IDNA+Y C PP
Sbjct:  450 LREELPACFNRERTDAFAIKFCHHNSKSARRKLVRALFEAPRQSLDLLPQYARLVATLD-QVLRDIAPALTDDLQGEFRWLLRKRTVTRLIDAKRRNVCFIGELIKFKVAPPIVAFQCLKACFQEFTGSNVEMACMLLESCGRFLYRSKATHARTASYLEILQRFRLAKHLDTRYETMIDNAYYMCKPP 637

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BLAST of mRNA_S-dermatodea_contig10609.423.1 vs. uniprot
Match: A0A0V0J0A4_SOLCH (Putative ovule protein n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0J0A4_SOLCH)

HSP 1 Score: 191 bits (484), Expect = 5.320e-55
Identity = 95/190 (50.00%), Postives = 126/190 (66.32%), Query Frame = 0

Query:   29 LEDELPSCHNQERVDDFAKKFCYVNSKGARKRLVAALFGVPRQDLDLLPMYARLVAILDKQAMKSIAPALLDELRSHFRYFLRKKAPGQIDHRIKNVRFIGELVKFRVAPPVVAFQCLKACLDVFSSLSVQTMTSLLETCGRFLYRQKLTQQRMRSFLSVMMKLKKAKNLDPRLEALIDNAFYTCCPPPR 218
            L   LP C +++ +D    +FCY+NSK +RK+LV ALF VPR  L+LLP Y+R+VA L    MK ++  LL  L   F + + KK    I+ +I+N+RFIGEL KFR+APP + F CLKACLD FS  ++    +LLETCGRFLYR   T  RM + L ++M+LK  KNLDPR   L++NA+Y C PP R
Sbjct:  119 LLQRLPGCVSRDLIDQLTVEFCYLNSKSSRKKLVRALFNVPRTSLELLPYYSRMVATLST-CMKDVSSMLLQLLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFRIAPPGLVFSCLKACLDDFSHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHITLVENAYYLCKPPER 307

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BLAST of mRNA_S-dermatodea_contig10609.423.1 vs. uniprot
Match: A0A835USC6_VANPL (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835USC6_VANPL)

HSP 1 Score: 190 bits (483), Expect = 6.870e-54
Identity = 96/196 (48.98%), Postives = 128/196 (65.31%), Query Frame = 0

Query:   23 ARLTLMLEDELPSCHNQERVDDFAKKFCYVNSKGARKRLVAALFGVPRQDLDLLPMYARLVAILDKQAMKSIAPALLDELRSHFRYFLRKKAPGQIDHRIKNVRFIGELVKFRVAPPVVAFQCLKACLDVFSSLSVQTMTSLLETCGRFLYRQKLTQQRMRSFLSVMMKLKKAKNLDPRLEALIDNAFYTCCPPPR 218
            A L  +L+  LP C +++ +D    +FCY+NSK  RK+LV ALF VPR  L+LLP Y+R+VA L    MK +   LL  L   F + + KK    I+ +IKN+RFIGEL KFR+AP  + F CLKACLD F+  ++    +LLETCGRFLYRQ  T  RM + L ++++LK  KNLDPR   L++NA+Y C PP R
Sbjct:  201 ASLDSLLQ-RLPGCVSRDLIDQLTVEFCYLNSKSNRKKLVRALFNVPRTSLELLPYYSRMVATLST-CMKDVPSILLSMLEEEFNFLINKKDQTNIETKIKNIRFIGELCKFRIAPATLVFSCLKACLDDFNHHNIDVACNLLETCGRFLYRQPETSIRMANMLEILVRLKNVKNLDPRHSTLVENAYYLCKPPER 394

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BLAST of mRNA_S-dermatodea_contig10609.423.1 vs. uniprot
Match: A0A453P4T8_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453P4T8_AEGTS)

HSP 1 Score: 189 bits (479), Expect = 8.440e-54
Identity = 93/190 (48.95%), Postives = 124/190 (65.26%), Query Frame = 0

Query:   29 LEDELPSCHNQERVDDFAKKFCYVNSKGARKRLVAALFGVPRQDLDLLPMYARLVAILDKQAMKSIAPALLDELRSHFRYFLRKKAPGQIDHRIKNVRFIGELVKFRVAPPVVAFQCLKACLDVFSSLSVQTMTSLLETCGRFLYRQKLTQQRMRSFLSVMMKLKKAKNLDPRLEALIDNAFYTCCPPPR 218
            L   LP C +++ +D    +FCY+NSK +RK+LV ALF VPR  L+LLP Y+R++A L    MK +   LL  L   F + + KK    I+ +IKN+RFIGEL KF++AP  + F CLKACLD FS  ++    +LLETCGRFLYR   T  RM + L ++M+LK  KNLDPR   L++NA+Y C PP R
Sbjct:   76 LLQRLPGCVSRDLIDQLTVEFCYLNSKASRKKLVRALFSVPRTSLELLPYYSRMIATLSS-CMKDVPTMLLPMLEEEFNFLINKKDQINIETKIKNIRFIGELCKFKIAPAALVFSCLKACLDDFSHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPER 264

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BLAST of mRNA_S-dermatodea_contig10609.423.1 vs. uniprot
Match: A0A833VGD9_9POAL (Uncharacterized protein n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833VGD9_9POAL)

HSP 1 Score: 193 bits (490), Expect = 4.530e-53
Identity = 99/197 (50.25%), Postives = 130/197 (65.99%), Query Frame = 0

Query:   22 NARLTLMLEDELPSCHNQERVDDFAKKFCYVNSKGARKRLVAALFGVPRQDLDLLPMYARLVAILDKQAMKSIAPALLDELRSHFRYFLRKKAPGQIDHRIKNVRFIGELVKFRVAPPVVAFQCLKACLDVFSSLSVQTMTSLLETCGRFLYRQKLTQQRMRSFLSVMMKLKKAKNLDPRLEALIDNAFYTCCPPPR 218
            NA L  +L+  LPSC +++ +D    +FCY+NSK  RK+LV ALFGVPR  L+LLP Y+R+VA L    M+ +   LL+ L   F + + KK    I+ +IKN+RFIGEL KF++APP V F C K CLD F+  ++    SLLETCGRFLYR   T  RM + L VMM+LK  KNLDPR   L++NA+Y C PP +
Sbjct:  466 NASLDALLQ-RLPSCVSRDLIDQLTVEFCYLNSKATRKKLVRALFGVPRTSLELLPYYSRMVATL-ATCMRDVPTMLLNMLEEEFNFLINKKDQINIETKIKNIRFIGELCKFKIAPPGVVFTCFKQCLDDFTHHNIDVACSLLETCGRFLYRSPETTVRMANMLDVMMRLKIIKNLDPRHSTLVENAYYLCKPPEK 660

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BLAST of mRNA_S-dermatodea_contig10609.423.1 vs. uniprot
Match: A0A1D6HDV8_MAIZE (Regulator of nonsense transcripts UPF2 n=2 Tax=Zea mays TaxID=4577 RepID=A0A1D6HDV8_MAIZE)

HSP 1 Score: 185 bits (469), Expect = 6.960e-53
Identity = 95/196 (48.47%), Postives = 126/196 (64.29%), Query Frame = 0

Query:   23 ARLTLMLEDELPSCHNQERVDDFAKKFCYVNSKGARKRLVAALFGVPRQDLDLLPMYARLVAILDKQAMKSIAPALLDELRSHFRYFLRKKAPGQIDHRIKNVRFIGELVKFRVAPPVVAFQCLKACLDVFSSLSVQTMTSLLETCGRFLYRQKLTQQRMRSFLSVMMKLKKAKNLDPRLEALIDNAFYTCCPPPR 218
            A L  +L+  LP C +++ +D    +FCY+NSK  RK+L  ALF V R  L+LLP Y+RLVA L    MK +   LL  L   F + + KK    I+ +IKN+RFIGEL KF++APP + F CLK+CLD FS  ++    +LLETCGRFLYR   T  RM + L ++M+LK  KNLDPR   L++NA+Y C PP R
Sbjct:    4 ASLDNILQ-RLPGCVSRDLIDQLTVEFCYLNSKANRKKLARALFNVNRTSLELLPYYSRLVATLST-CMKDVPSMLLSMLEEEFNFLINKKDQINIETKIKNIRFIGELCKFKMAPPALVFSCLKSCLDDFSHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPER 197

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BLAST of mRNA_S-dermatodea_contig10609.423.1 vs. uniprot
Match: A0A7N0V2R3_KALFE (Uncharacterized protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0V2R3_KALFE)

HSP 1 Score: 191 bits (484), Expect = 1.820e-52
Identity = 94/190 (49.47%), Postives = 125/190 (65.79%), Query Frame = 0

Query:   29 LEDELPSCHNQERVDDFAKKFCYVNSKGARKRLVAALFGVPRQDLDLLPMYARLVAILDKQAMKSIAPALLDELRSHFRYFLRKKAPGQIDHRIKNVRFIGELVKFRVAPPVVAFQCLKACLDVFSSLSVQTMTSLLETCGRFLYRQKLTQQRMRSFLSVMMKLKKAKNLDPRLEALIDNAFYTCCPPPR 218
            L   LP C +++ +D    +FCY+NSK  RK+LV ALF VPR  L+LLP Y+R+VA L    MK I+  +L  L   F + + KK    I+ +IKN+RFIGEL KF++APP + F CLKACLD F+  ++    +LLETCGRFLYR   T  RM + L ++M+LK  KNLDPR   L++NA+Y C PP R
Sbjct:  210 LLQRLPGCVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRMVATLST-CMKDISSVILQMLEEEFNFLINKKDQMNIETKIKNIRFIGELCKFKIAPPGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETSLRMANMLGILMRLKNVKNLDPRHSTLVENAYYLCKPPER 398

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BLAST of mRNA_S-dermatodea_contig10609.423.1 vs. uniprot
Match: A0A6P5F9Z5_ANACO (regulator of nonsense transcripts UPF2 isoform X1 n=4 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5F9Z5_ANACO)

HSP 1 Score: 191 bits (485), Expect = 2.170e-52
Identity = 96/190 (50.53%), Postives = 123/190 (64.74%), Query Frame = 0

Query:   29 LEDELPSCHNQERVDDFAKKFCYVNSKGARKRLVAALFGVPRQDLDLLPMYARLVAILDKQAMKSIAPALLDELRSHFRYFLRKKAPGQIDHRIKNVRFIGELVKFRVAPPVVAFQCLKACLDVFSSLSVQTMTSLLETCGRFLYRQKLTQQRMRSFLSVMMKLKKAKNLDPRLEALIDNAFYTCCPPPR 218
            L   LP C  ++ +D    +FCY+NSK  RK+LV ALF VPR  L+LLP Y+R+VA L    MK +   LL  L   F Y + KK    I+ +IKN+RFIGEL KFR+APP + F CLKACLD F+  ++    +LLETCGRFLYR   T  RM + L ++M+LK  KNLDPR   L++NA+Y C PP R
Sbjct:  474 LLQRLPGCVGRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRMVATLST-CMKDVPSLLLSMLEEEFNYLINKKDQTNIETKIKNIRFIGELCKFRMAPPGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPER 662

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BLAST of mRNA_S-dermatodea_contig10609.423.1 vs. uniprot
Match: UPI0018AEA7EF (regulator of nonsense transcripts UPF2 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0018AEA7EF)

HSP 1 Score: 191 bits (485), Expect = 2.170e-52
Identity = 96/190 (50.53%), Postives = 125/190 (65.79%), Query Frame = 0

Query:   29 LEDELPSCHNQERVDDFAKKFCYVNSKGARKRLVAALFGVPRQDLDLLPMYARLVAILDKQAMKSIAPALLDELRSHFRYFLRKKAPGQIDHRIKNVRFIGELVKFRVAPPVVAFQCLKACLDVFSSLSVQTMTSLLETCGRFLYRQKLTQQRMRSFLSVMMKLKKAKNLDPRLEALIDNAFYTCCPPPR 218
            L   LP C +++ +D    +FCY+NSK  RK+LV ALFGVPR  L+LLP Y+R+VA L    MK +   L+  L   F + L KK    I+ +IKN+RFIGEL KF+VAPP + F CLKACLD F+  ++    +LLETCGRFLYR   T  RM + L ++M+LK  KNLDPR   L++NA+Y C PP R
Sbjct:  474 LLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKKLVRALFGVPRSSLELLPYYSRMVATLST-CMKDVPTMLVTLLEDEFNFLLSKKDQTNIETKIKNIRFIGELCKFKVAPPGLVFSCLKACLDDFNHHNIDVACNLLETCGRFLYRSPETTIRMTNMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPER 662

The following BLAST results are available for this feature:

BLAST of mRNA_S-dermatodea_contig10609.423.1 vs. uniprot

BLAST of mRNA_S-dermatodea_contig10609.423.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LEF3_ECTSI	1.460e-104	83.41	Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID...	[more]
A0A835YRH9_9STRA	3.410e-60	57.14	Armadillo-type protein n=1 Tax=Tribonema minus Tax...	[more]
A0A0V0J0A4_SOLCH	5.320e-55	50.00	Putative ovule protein n=1 Tax=Solanum chacoense T...	[more]
A0A835USC6_VANPL	6.870e-54	48.98	Uncharacterized protein n=1 Tax=Vanilla planifolia...	[more]
A0A453P4T8_AEGTS	8.440e-54	48.95	Uncharacterized protein n=1 Tax=Aegilops tauschii ...	[more]
A0A833VGD9_9POAL	4.530e-53	50.25	Uncharacterized protein n=1 Tax=Carex littledalei ...	[more]
A0A1D6HDV8_MAIZE	6.960e-53	48.47	Regulator of nonsense transcripts UPF2 n=2 Tax=Zea...	[more]
A0A7N0V2R3_KALFE	1.820e-52	49.47	Uncharacterized protein n=1 Tax=Kalanchoe fedtsche...	[more]
A0A6P5F9Z5_ANACO	2.170e-52	50.53	regulator of nonsense transcripts UPF2 isoform X1 ...	[more]
UPI0018AEA7EF	2.170e-52	50.53	regulator of nonsense transcripts UPF2 n=1 Tax=Dio...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003890	MIF4G-like, type 3	SMART	SM00543	if4_15	coord: 27..216 e-value: 1.3E-24 score: 97.8
IPR003890	MIF4G-like, type 3	PFAM	PF02854	MIF4G	coord: 40..211 e-value: 2.8E-22 score: 79.4
IPR016021	MIF4G-like domain superfamily	GENE3D	1.25.40.180		coord: 32..212 e-value: 2.9E-31 score: 110.5
IPR039762	Nonsense-mediated mRNA decay protein Nmd2/UPF2	PANTHER	PTHR12839	NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2	coord: 22..218
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 32..216

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-dermatodea_contig10609	contig	S-dermatodea_contig10609:2714..7375 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-dermatodea_contig10609.423.1	mRNA_S-dermatodea_contig10609.423.1	Saccorhiza dermatodea SderLu1190fm monoicous	mRNA	S-dermatodea_contig10609 2714..7375 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-dermatodea_contig10609.423.1 ID=prot_S-dermatodea_contig10609.423.1|Name=mRNA_S-dermatodea_contig10609.423.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=219bp
QDGGGDGDDGEEGGGEHTISRNARLTLMLEDELPSCHNQERVDDFAKKFC
YVNSKGARKRLVAALFGVPRQDLDLLPMYARLVAILDKQAMKSIAPALLD
ELRSHFRYFLRKKAPGQIDHRIKNVRFIGELVKFRVAPPVVAFQCLKACL
DVFSSLSVQTMTSLLETCGRFLYRQKLTQQRMRSFLSVMMKLKKAKNLDP
RLEALIDNAFYTCCPPPR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003890	MIF4G-like_typ-3
IPR016021	MIF4-like_sf
IPR039762	Nmd2/UPF2
IPR016024	ARM-type_fold