mRNA_S-dermatodea_contig10609.423.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10609.423.1
Unique NamemRNA_S-dermatodea_contig10609.423.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10609.423.1 vs. uniprot
Match: D8LEF3_ECTSI (Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF3_ECTSI)

HSP 1 Score: 340 bits (872), Expect = 1.460e-104
Identity = 171/205 (83.41%), Postives = 189/205 (92.20%), Query Frame = 1 
Query:   40 GGEHTISRNARLTLMLEDELPSCHNQERVDDFAKKFCYVNSKGARKRLVAALFGVPRQDLDLLPMYARLVAILDKQAMKSIAPALLDELRSHFRYFLRKKAPGQIDHRIKNVRFIGELVKFRVAPPVVAFQCLKACLDVFSSLSVQTMTSLLETCGRFLYRQKLTQQRMRSFLSVMMKLKKAKNLDPRLEALIDNAFYTCCPPPR 654
            GGE+ +SRN+RL LMLEDELP+CHNQERVD+FAKKFCYVNSK ARK+LVAALF VPRQ  DLLPMYARLVAILD QAMK+IAP L++ELRSHFRYFLRKKAPGQIDHRIKN RFIGELVKFRVAPPVVAFQCL++CLD FSSL+VQTM +LLETCGRFL+RQKLT QR RSFL+VMMK+K AKNLD RLEA++DNAFYTCCPP R
Sbjct:  860 GGEY-MSRNSRLMLMLEDELPNCHNQERVDEFAKKFCYVNSKSARKKLVAALFNVPRQARDLLPMYARLVAILD-QAMKTIAPLLIEELRSHFRYFLRKKAPGQIDHRIKNARFIGELVKFRVAPPVVAFQCLRSCLDDFSSLAVQTMAALLETCGRFLFRQKLTHQRTRSFLTVMMKVKSAKNLDKRLEAVVDNAFYTCCPPER 1062
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BLAST of mRNA_S-dermatodea_contig10609.423.1 vs. uniprot
Match: A0A835YRH9_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRH9_9STRA)

HSP 1 Score: 213 bits (543), Expect = 3.410e-60
Identity = 108/189 (57.14%), Postives = 138/189 (73.02%), Query Frame = 1 
Query:   85 LEDELPSCHNQERVDDFAKKFCYVNSKGARKRLVAALFGVPRQDLDLLPMYARLVAILDKQAMKSIAPALLDELRSHFRYFLRKKAPGQ-IDHRIKNVRFIGELVKFRVAPPVVAFQCLKACLDVFSSLSVQTMTSLLETCGRFLYRQKLTQQRMRSFLSVMMKLKKAKNLDPRLEALIDNAFYTCCPP 648
            L +ELP+C N+ER D FA KFC+ NSK AR++LV ALF  PRQ LDLLP YARLVA LD Q ++ IAPAL D+L+  FR+ LRK+   + ID + +NV FIGEL+KF+VAPP+VAFQCLKAC   F+  +V+    LLE+CGRFLYR K T  R  S+L ++ + + AK+LD R E +IDNA+Y C PP
Sbjct:  450 LREELPACFNRERTDAFAIKFCHHNSKSARRKLVRALFEAPRQSLDLLPQYARLVATLD-QVLRDIAPALTDDLQGEFRWLLRKRTVTRLIDAKRRNVCFIGELIKFKVAPPIVAFQCLKACFQEFTGSNVEMACMLLESCGRFLYRSKATHARTASYLEILQRFRLAKHLDTRYETMIDNAYYMCKPP 637
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BLAST of mRNA_S-dermatodea_contig10609.423.1 vs. uniprot
Match: A0A0V0J0A4_SOLCH (Putative ovule protein n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0J0A4_SOLCH)

HSP 1 Score: 191 bits (484), Expect = 5.320e-55
Identity = 95/190 (50.00%), Postives = 126/190 (66.32%), Query Frame = 1 
Query:   85 LEDELPSCHNQERVDDFAKKFCYVNSKGARKRLVAALFGVPRQDLDLLPMYARLVAILDKQAMKSIAPALLDELRSHFRYFLRKKAPGQIDHRIKNVRFIGELVKFRVAPPVVAFQCLKACLDVFSSLSVQTMTSLLETCGRFLYRQKLTQQRMRSFLSVMMKLKKAKNLDPRLEALIDNAFYTCCPPPR 654
            L   LP C +++ +D    +FCY+NSK +RK+LV ALF VPR  L+LLP Y+R+VA L    MK ++  LL  L   F + + KK    I+ +I+N+RFIGEL KFR+APP + F CLKACLD FS  ++    +LLETCGRFLYR   T  RM + L ++M+LK  KNLDPR   L++NA+Y C PP R
Sbjct:  119 LLQRLPGCVSRDLIDQLTVEFCYLNSKSSRKKLVRALFNVPRTSLELLPYYSRMVATLST-CMKDVSSMLLQLLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFRIAPPGLVFSCLKACLDDFSHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHITLVENAYYLCKPPER 307
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BLAST of mRNA_S-dermatodea_contig10609.423.1 vs. uniprot
Match: A0A835USC6_VANPL (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835USC6_VANPL)

HSP 1 Score: 190 bits (483), Expect = 6.870e-54
Identity = 96/196 (48.98%), Postives = 128/196 (65.31%), Query Frame = 1 
Query:   67 ARLTLMLEDELPSCHNQERVDDFAKKFCYVNSKGARKRLVAALFGVPRQDLDLLPMYARLVAILDKQAMKSIAPALLDELRSHFRYFLRKKAPGQIDHRIKNVRFIGELVKFRVAPPVVAFQCLKACLDVFSSLSVQTMTSLLETCGRFLYRQKLTQQRMRSFLSVMMKLKKAKNLDPRLEALIDNAFYTCCPPPR 654
            A L  +L+  LP C +++ +D    +FCY+NSK  RK+LV ALF VPR  L+LLP Y+R+VA L    MK +   LL  L   F + + KK    I+ +IKN+RFIGEL KFR+AP  + F CLKACLD F+  ++    +LLETCGRFLYRQ  T  RM + L ++++LK  KNLDPR   L++NA+Y C PP R
Sbjct:  201 ASLDSLLQ-RLPGCVSRDLIDQLTVEFCYLNSKSNRKKLVRALFNVPRTSLELLPYYSRMVATLST-CMKDVPSILLSMLEEEFNFLINKKDQTNIETKIKNIRFIGELCKFRIAPATLVFSCLKACLDDFNHHNIDVACNLLETCGRFLYRQPETSIRMANMLEILVRLKNVKNLDPRHSTLVENAYYLCKPPER 394
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BLAST of mRNA_S-dermatodea_contig10609.423.1 vs. uniprot
Match: A0A453P4T8_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453P4T8_AEGTS)

HSP 1 Score: 189 bits (479), Expect = 8.440e-54
Identity = 93/190 (48.95%), Postives = 124/190 (65.26%), Query Frame = 1 
Query:   85 LEDELPSCHNQERVDDFAKKFCYVNSKGARKRLVAALFGVPRQDLDLLPMYARLVAILDKQAMKSIAPALLDELRSHFRYFLRKKAPGQIDHRIKNVRFIGELVKFRVAPPVVAFQCLKACLDVFSSLSVQTMTSLLETCGRFLYRQKLTQQRMRSFLSVMMKLKKAKNLDPRLEALIDNAFYTCCPPPR 654
            L   LP C +++ +D    +FCY+NSK +RK+LV ALF VPR  L+LLP Y+R++A L    MK +   LL  L   F + + KK    I+ +IKN+RFIGEL KF++AP  + F CLKACLD FS  ++    +LLETCGRFLYR   T  RM + L ++M+LK  KNLDPR   L++NA+Y C PP R
Sbjct:   76 LLQRLPGCVSRDLIDQLTVEFCYLNSKASRKKLVRALFSVPRTSLELLPYYSRMIATLSS-CMKDVPTMLLPMLEEEFNFLINKKDQINIETKIKNIRFIGELCKFKIAPAALVFSCLKACLDDFSHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPER 264
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BLAST of mRNA_S-dermatodea_contig10609.423.1 vs. uniprot
Match: A0A833VGD9_9POAL (Uncharacterized protein n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833VGD9_9POAL)

HSP 1 Score: 193 bits (490), Expect = 4.530e-53
Identity = 99/197 (50.25%), Postives = 130/197 (65.99%), Query Frame = 1 
Query:   64 NARLTLMLEDELPSCHNQERVDDFAKKFCYVNSKGARKRLVAALFGVPRQDLDLLPMYARLVAILDKQAMKSIAPALLDELRSHFRYFLRKKAPGQIDHRIKNVRFIGELVKFRVAPPVVAFQCLKACLDVFSSLSVQTMTSLLETCGRFLYRQKLTQQRMRSFLSVMMKLKKAKNLDPRLEALIDNAFYTCCPPPR 654
            NA L  +L+  LPSC +++ +D    +FCY+NSK  RK+LV ALFGVPR  L+LLP Y+R+VA L    M+ +   LL+ L   F + + KK    I+ +IKN+RFIGEL KF++APP V F C K CLD F+  ++    SLLETCGRFLYR   T  RM + L VMM+LK  KNLDPR   L++NA+Y C PP +
Sbjct:  466 NASLDALLQ-RLPSCVSRDLIDQLTVEFCYLNSKATRKKLVRALFGVPRTSLELLPYYSRMVATL-ATCMRDVPTMLLNMLEEEFNFLINKKDQINIETKIKNIRFIGELCKFKIAPPGVVFTCFKQCLDDFTHHNIDVACSLLETCGRFLYRSPETTVRMANMLDVMMRLKIIKNLDPRHSTLVENAYYLCKPPEK 660
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BLAST of mRNA_S-dermatodea_contig10609.423.1 vs. uniprot
Match: A0A1D6HDV8_MAIZE (Regulator of nonsense transcripts UPF2 n=2 Tax=Zea mays TaxID=4577 RepID=A0A1D6HDV8_MAIZE)

HSP 1 Score: 185 bits (469), Expect = 6.960e-53
Identity = 95/196 (48.47%), Postives = 126/196 (64.29%), Query Frame = 1 
Query:   67 ARLTLMLEDELPSCHNQERVDDFAKKFCYVNSKGARKRLVAALFGVPRQDLDLLPMYARLVAILDKQAMKSIAPALLDELRSHFRYFLRKKAPGQIDHRIKNVRFIGELVKFRVAPPVVAFQCLKACLDVFSSLSVQTMTSLLETCGRFLYRQKLTQQRMRSFLSVMMKLKKAKNLDPRLEALIDNAFYTCCPPPR 654
            A L  +L+  LP C +++ +D    +FCY+NSK  RK+L  ALF V R  L+LLP Y+RLVA L    MK +   LL  L   F + + KK    I+ +IKN+RFIGEL KF++APP + F CLK+CLD FS  ++    +LLETCGRFLYR   T  RM + L ++M+LK  KNLDPR   L++NA+Y C PP R
Sbjct:    4 ASLDNILQ-RLPGCVSRDLIDQLTVEFCYLNSKANRKKLARALFNVNRTSLELLPYYSRLVATLST-CMKDVPSMLLSMLEEEFNFLINKKDQINIETKIKNIRFIGELCKFKMAPPALVFSCLKSCLDDFSHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPER 197
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BLAST of mRNA_S-dermatodea_contig10609.423.1 vs. uniprot
Match: A0A7N0V2R3_KALFE (Uncharacterized protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0V2R3_KALFE)

HSP 1 Score: 191 bits (484), Expect = 1.820e-52
Identity = 94/190 (49.47%), Postives = 125/190 (65.79%), Query Frame = 1 
Query:   85 LEDELPSCHNQERVDDFAKKFCYVNSKGARKRLVAALFGVPRQDLDLLPMYARLVAILDKQAMKSIAPALLDELRSHFRYFLRKKAPGQIDHRIKNVRFIGELVKFRVAPPVVAFQCLKACLDVFSSLSVQTMTSLLETCGRFLYRQKLTQQRMRSFLSVMMKLKKAKNLDPRLEALIDNAFYTCCPPPR 654
            L   LP C +++ +D    +FCY+NSK  RK+LV ALF VPR  L+LLP Y+R+VA L    MK I+  +L  L   F + + KK    I+ +IKN+RFIGEL KF++APP + F CLKACLD F+  ++    +LLETCGRFLYR   T  RM + L ++M+LK  KNLDPR   L++NA+Y C PP R
Sbjct:  210 LLQRLPGCVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRMVATLST-CMKDISSVILQMLEEEFNFLINKKDQMNIETKIKNIRFIGELCKFKIAPPGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETSLRMANMLGILMRLKNVKNLDPRHSTLVENAYYLCKPPER 398
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BLAST of mRNA_S-dermatodea_contig10609.423.1 vs. uniprot
Match: A0A6P5F9Z5_ANACO (regulator of nonsense transcripts UPF2 isoform X1 n=4 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5F9Z5_ANACO)

HSP 1 Score: 191 bits (485), Expect = 2.170e-52
Identity = 96/190 (50.53%), Postives = 123/190 (64.74%), Query Frame = 1 
Query:   85 LEDELPSCHNQERVDDFAKKFCYVNSKGARKRLVAALFGVPRQDLDLLPMYARLVAILDKQAMKSIAPALLDELRSHFRYFLRKKAPGQIDHRIKNVRFIGELVKFRVAPPVVAFQCLKACLDVFSSLSVQTMTSLLETCGRFLYRQKLTQQRMRSFLSVMMKLKKAKNLDPRLEALIDNAFYTCCPPPR 654
            L   LP C  ++ +D    +FCY+NSK  RK+LV ALF VPR  L+LLP Y+R+VA L    MK +   LL  L   F Y + KK    I+ +IKN+RFIGEL KFR+APP + F CLKACLD F+  ++    +LLETCGRFLYR   T  RM + L ++M+LK  KNLDPR   L++NA+Y C PP R
Sbjct:  474 LLQRLPGCVGRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRMVATLST-CMKDVPSLLLSMLEEEFNYLINKKDQTNIETKIKNIRFIGELCKFRMAPPGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPER 662
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BLAST of mRNA_S-dermatodea_contig10609.423.1 vs. uniprot
Match: UPI0018AEA7EF (regulator of nonsense transcripts UPF2 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0018AEA7EF)

HSP 1 Score: 191 bits (485), Expect = 2.170e-52
Identity = 96/190 (50.53%), Postives = 125/190 (65.79%), Query Frame = 1 
Query:   85 LEDELPSCHNQERVDDFAKKFCYVNSKGARKRLVAALFGVPRQDLDLLPMYARLVAILDKQAMKSIAPALLDELRSHFRYFLRKKAPGQIDHRIKNVRFIGELVKFRVAPPVVAFQCLKACLDVFSSLSVQTMTSLLETCGRFLYRQKLTQQRMRSFLSVMMKLKKAKNLDPRLEALIDNAFYTCCPPPR 654
            L   LP C +++ +D    +FCY+NSK  RK+LV ALFGVPR  L+LLP Y+R+VA L    MK +   L+  L   F + L KK    I+ +IKN+RFIGEL KF+VAPP + F CLKACLD F+  ++    +LLETCGRFLYR   T  RM + L ++M+LK  KNLDPR   L++NA+Y C PP R
Sbjct:  474 LLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKKLVRALFGVPRSSLELLPYYSRMVATLST-CMKDVPTMLVTLLEDEFNFLLSKKDQTNIETKIKNIRFIGELCKFKVAPPGLVFSCLKACLDDFNHHNIDVACNLLETCGRFLYRSPETTIRMTNMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPER 662
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10609.423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEF3_ECTSI1.460e-10483.41Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID... [more]
A0A835YRH9_9STRA3.410e-6057.14Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
A0A0V0J0A4_SOLCH5.320e-5550.00Putative ovule protein n=1 Tax=Solanum chacoense T... [more]
A0A835USC6_VANPL6.870e-5448.98Uncharacterized protein n=1 Tax=Vanilla planifolia... [more]
A0A453P4T8_AEGTS8.440e-5448.95Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]
A0A833VGD9_9POAL4.530e-5350.25Uncharacterized protein n=1 Tax=Carex littledalei ... [more]
A0A1D6HDV8_MAIZE6.960e-5348.47Regulator of nonsense transcripts UPF2 n=2 Tax=Zea... [more]
A0A7N0V2R3_KALFE1.820e-5249.47Uncharacterized protein n=1 Tax=Kalanchoe fedtsche... [more]
A0A6P5F9Z5_ANACO2.170e-5250.53regulator of nonsense transcripts UPF2 isoform X1 ... [more]
UPI0018AEA7EF2.170e-5250.53regulator of nonsense transcripts UPF2 n=1 Tax=Dio... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10609contigS-dermatodea_contig10609:2714..7375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score342.4
Seed ortholog evalue1.5e-91
Seed eggNOG ortholog2880.D8LEF3
Preferred nameUPF2
KEGG koko:K14327
KEGG Pathwayko03013,ko03015,map03013,map03015
KEGG ModuleM00430
GOsGO:0000184,GO:0000288,GO:0000291,GO:0000956,GO:0001101,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005844,GO:0006139,GO:0006259,GO:0006310,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006952,GO:0007154,GO:0007165,GO:0007267,GO:0007268,GO:0007274,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009314,GO:0009416,GO:0009605,GO:0009607,GO:0009611,GO:0009617,GO:0009628,GO:0009648,GO:0009719,GO:0009725,GO:0009751,GO:0009753,GO:0009755,GO:0009863,GO:0009867,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0014070,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019899,GO:0023052,GO:0031503,GO:0031974,GO:0031981,GO:0032870,GO:0032991,GO:0033036,GO:0034427,GO:0034613,GO:0034641,GO:0034655,GO:0035145,GO:0035690,GO:0035770,GO:0036464,GO:0042162,GO:0042221,GO:0042493,GO:0042742,GO:0042886,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046483,GO:0046677,GO:0046700,GO:0046907,GO:0048519,GO:0048571,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050808,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070478,GO:0070727,GO:0070887,GO:0071166,GO:0071229,GO:0071236,GO:0071310,GO:0071395,GO:0071407,GO:0071426,GO:0071427,GO:0071446,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0090304,GO:0097159,GO:0098542,GO:0098916,GO:0099536,GO:0099537,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901700,GO:1901701,GO:1990904
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
EggNOG OGsKOG2051@1,KOG2051@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMIF4-like, type 1/2/3
Ec32 orthologEc-00_002070.1
Exons6
Model size657
Cds size657
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10609.423.1prot_S-dermatodea_contig10609.423.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10609 2714..7375 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924165.5619316-CDS-S-dermatodea_contig10609:2713..28511622924165.5619316-CDS-S-dermatodea_contig10609:2713..2851Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10609 2714..2851 +
1694079062.6176317-CDS-S-dermatodea_contig10609:2713..28511694079062.6176317-CDS-S-dermatodea_contig10609:2713..2851Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10609 2714..2851 +
1622924165.5747952-CDS-S-dermatodea_contig10609:3454..35801622924165.5747952-CDS-S-dermatodea_contig10609:3454..3580Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10609 3455..3580 +
1694079062.6299102-CDS-S-dermatodea_contig10609:3454..35801694079062.6299102-CDS-S-dermatodea_contig10609:3454..3580Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10609 3455..3580 +
1622924165.5841644-CDS-S-dermatodea_contig10609:4332..43881622924165.5841644-CDS-S-dermatodea_contig10609:4332..4388Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10609 4333..4388 +
1694079062.6417255-CDS-S-dermatodea_contig10609:4332..43881694079062.6417255-CDS-S-dermatodea_contig10609:4332..4388Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10609 4333..4388 +
1622924165.5989783-CDS-S-dermatodea_contig10609:4824..49091622924165.5989783-CDS-S-dermatodea_contig10609:4824..4909Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10609 4825..4909 +
1694079062.6576893-CDS-S-dermatodea_contig10609:4824..49091694079062.6576893-CDS-S-dermatodea_contig10609:4824..4909Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10609 4825..4909 +
1622924165.611435-CDS-S-dermatodea_contig10609:6264..63681622924165.611435-CDS-S-dermatodea_contig10609:6264..6368Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10609 6265..6368 +
1694079062.6674986-CDS-S-dermatodea_contig10609:6264..63681694079062.6674986-CDS-S-dermatodea_contig10609:6264..6368Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10609 6265..6368 +
1622924165.624265-CDS-S-dermatodea_contig10609:7227..73751622924165.624265-CDS-S-dermatodea_contig10609:7227..7375Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10609 7228..7375 +
1694079062.6774538-CDS-S-dermatodea_contig10609:7227..73751694079062.6774538-CDS-S-dermatodea_contig10609:7227..7375Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10609 7228..7375 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10609.423.1

>prot_S-dermatodea_contig10609.423.1 ID=prot_S-dermatodea_contig10609.423.1|Name=mRNA_S-dermatodea_contig10609.423.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=219bp
QDGGGDGDDGEEGGGEHTISRNARLTLMLEDELPSCHNQERVDDFAKKFC
YVNSKGARKRLVAALFGVPRQDLDLLPMYARLVAILDKQAMKSIAPALLD
ELRSHFRYFLRKKAPGQIDHRIKNVRFIGELVKFRVAPPVVAFQCLKACL
DVFSSLSVQTMTSLLETCGRFLYRQKLTQQRMRSFLSVMMKLKKAKNLDP
RLEALIDNAFYTCCPPPR*
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mRNA from alignment at S-dermatodea_contig10609:2714..7375+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10609.423.1 ID=mRNA_S-dermatodea_contig10609.423.1|Name=mRNA_S-dermatodea_contig10609.423.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4662bp|location=Sequence derived from alignment at S-dermatodea_contig10609:2714..7375+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGATGGAGGCGGTGACGGGGACGACGGGGAAGAAGGCGGCGGCGAGCA
CACCATCAGCCGCAACGCGCGCCTTACCCTGATGCTGGAGGACGAGCTTC
CGAGCTGTCACAACCAGGAGAGGGTTGACGATTTCGCGGTGAGAGCTCTC
TTGTGTTGCTGTGTATCCTTACGCTCTTGTAGTATTATAGGTGCAGTATT
TATGTATGTGTTTGTGGGTTGTAGTGGGCAGATGCCCGAAGTATTAGGCG
ACCCCTCAGGCAACCAGATTATCTTTGTGATAGGTGGATGGCGTGGAGTA
TACGTATACACACCGAACCGAAGTGGGCAAGCCGAGGGTACTCGTGGGTG
GTCTTGGGCAACCACCCCCGCGAGAGCACAGCCATGAGATGAGGCAAAGA
AGAAGAAATTGTCCCGTGGGGGGAGGTGGTGTCTTCGTGTATGGAGGCGT
CTGTGCTTTACATCCTCAAGGGAATGAATGTCATGTCTAGGGGGGGGGTC
CACCTGTCGCCCACATCTTTGTTGATTTTTTGTTATTTGGTCGGTCGGCT
GATGACGTGTTTGTGCGTGTGTTCTCGCTCTCGTTTTTTCGTTCGCCTGT
CCGTCCGTCCGTCCGTCCTTCTGTCTGTTTGTCTGCCTACCTGCCTGCCT
GCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGTGCAT
TCTGTCCATTCTGTCCACATCTGTTCGGCGGGGGAGACCAGAAAAAGTTC
TGCTACGTCAACAGCAAGGGAGCCAGGAAGCGCCTCGTCGCCGCGCTCTT
CGGCGTCCCGCGGCAGGATTTAGACCTGCTGCCCATGTACGCCAGGCTGG
TGGCCATCCTAGACAAGGTGCGGTGGAGGGTGGTGGGGCACGCACGCCGC
TCCGTAGTTTAGTGTATGCTGGTTGAAACACGCTTCCATCGCGGCACTCC
TCGGGGACGCGATTTTCCGAGTGCGATCCTCTTTTTGTTTCCCTTCGTTT
TTCTCTCTTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTG
TGTGTGGATGTCTACTGTGAGAGGTGGAATCCGCGCCGCGTTTATGTGCG
TGTGTATAATATGATGGTTTATGCCGTGTTGGTTGTCTTTAGCTTAATGT
GCGTTGTGTGCATGTGTGTATGTGTGGGTGTGGGTGTGTGTGAGTATGTG
TGTGTGTGTGTGTGTGAGTGTGTGTGTGTCCTTGCCTTGCCTTGCCTTGC
CTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTTGC
CTTGCCTTGTAAAAAAAAAAAATGTTTGACTTGAGTTGACAGGCATGCGG
CAATGTTTTCTCGGTGCTCAGTTAACCCTCTGTGAATGGTATGGTAAAAA
AATAGAAAACGGAAAGCTTCCACAGGTATGTCGAGCGCTGTGACATCCCG
TCGCCGCGCAGTTTCAAATTAAAAAAAAATGAAAGACGTGTTCGACTTCT
TCGTGTGGCTATGACACTACTATACAAACCCTGTGCGGGATGCGGCGGCG
CAGACCTATGTCATGTTAACCGCAGCGCAACGTGTGCGTCTCGTTTTTAC
TACGTGGCCTGGCGACGAGCAGGCGATGAAGAGCATCGCACCGGCGCTTC
TCGACGAACTCAGGAGTCACTTCAGGTGGGGCGGCGGGTCTCAGCCCTCA
GCGTTCGTTGTCGCACTAGAATGTAGCTGTCGTTACCGTCACAGTATTGA
TTGATTGATTGATTGATTGATGGATTTCTTGCTTGCTTGCTTATTGATTA
GTTGATTGATTGATGGATTGCTGGATTGCTTGCTTGCTTATTGATTGATT
GAGTGATTGATCGTTTGCTTGATTGTTTGATTGCTTGCTTGCTTGCTTGC
TTGCTTGCTTACTTGCTTGCTAATATCCCGAACTTGGGTCTGCCAAACAT
GCACAAACACACACACACATGCCTTCGACTTTATCGTTACAAGTACTGCA
CCTGGTTTGAGATACAATATGCATGCTTCTTTCAACGCTTCTTCCCCCCT
TCCTTGATGACATGTGCGTGTGTGTGTGTGTTTTTTTTTTTTTTTGCCCG
GTCTCCCACAGGTACTTCCTCCGAAAAAAGGCGCCGGGGCAGATCGACCA
CCGCATCAAGAACGTTCGATTTATCGGCGAGCTTGTCAAGTTTAGGGTGA
GGCCGACGGCTATACGGCGTTCTCGATTTGGCTCGCATCGTTTGCGTGTG
TGTGGTTCCACCACGCTTTCCCAAGATTTGTTTCCTCCGTCTTCTATTGT
GTCGTATGTTATGTATGTGTGTGTTATGTGTAGTTTTTGTTGTTGTTGGC
ACACACACGATGGACTTGTTTTTCCGAGGGCCGTCTGTGGTCACAAGGGA
TTGATAATCCATCCATCTTTTTTTGTCCCCGGTATGTGTTCACCTTTGAT
TTTTATCGCGAATGCATTGGGTTCGGCACTCCCACAGCTCGCCGATTTCT
CTTTTTTTTTTTGTGTACAAGCGATAAAATACTGCTGTGGACCATACCTG
CTATAATGATATGTGGTACAGCATTATGTAGAGCATGTTTCCTAGACCCA
TATGTGTCTCCTGGGTACACATCCATCCTGGGGGTTTCCATTGCCGACGG
AAGGAGCATCAACGACCGACGAAACCAGGATCAAGAACGGGGCATGACGG
CTTGGTCCTCTCACGGACCACAAGACCCGACAAACACCCATCGAGACTAT
TAATATCAATGCTTCGTATTAATATTAATTTTAATATTAACAGTAATACT
GTAGTAATCGTCCTTGCTACAGTATAAGACTGAAGAAAGAAACCACGCCT
CGGGGCTTCGTCCCACAGCACTGCTATTGATATTAGTTTAGTAAGGGGTG
CGTTGCCATACTTGCACGAATATGCTGTTACTGTCCTTGTGTGTGTGTGT
TACGTCTTATGTTGATTCGATTGATTGATTGATTGATTGATGTGCACACG
TATGCTCGTAGCCGGGGCTTTTTACGAAGACCCGTTGCGTTTATTTTGCG
TTGCGTTGCGTTGTGTTGTGTTGTGTGTGCGTGTTTTTTTTTTTTTTGTG
TACCGTTTTGCTTTGAAGGTGTGTTTTGCGTTGGGTTATTCGTTGCTTTT
TTTTTGCGTTGTGTTGTTTTTGCCGTGTTTTTGGTCGTGCCCTCTCTGTG
TGCCTTGCCTCGGGGGAAAACAAAAAAGAAACATGCATTTTATTTGACGG
ATTTGAGGCATATACATGCGCCCCCCGGATTCGATGTATGATACACAAAA
ATGGTTCGCGTGTATACGTGCGTGCGTGTGTGTTCGCATCGCATTTCTTC
TCTTCTCTTCTCTTCTCTTCTCTTGACGTGTCTCCGCTGTCACCTCTTTC
GCTTATTTTTCTTTTGTCTATTATTTTTCTTCTTTTGTCTCGAGAAATCG
TCGTGCAGCCTTGAGACACAAAGTTGCACGCACACACACACGAACACACA
ACACACACACACACACACACAAAACAACCACGCGTTTCATTGGCACCACA
GGTGGCGCCTCCGGTGGTGGCGTTCCAGTGCCTGAAGGCGTGTCTGGACG
TCTTTAGCTCCCTCTCGGTGCAGACCATGACTTCCCTCCTCGAGACCTGT
GGCAGGTGAGCCGAGCCGAGCCGAGCCATGCCATGCCGGGTCGAGTCAAC
GGTGGTGTTTGTGTGCTTGCGTTGTTTTTTTTTAGTTTGTTTGCTTCCCT
TGCTTTCCTCATTCCTCTCTTTCCTTGCGCACCTCCTCGCGTACCTGCTC
GCTAACCTGCACGCTTACCTACTCGCTTACTTTCTCGATTACCTGCTCGA
TAACTGCTCGCGTAACTGTTTCCTTACCTGCTTGCTGCTTACGTGCGTGC
TTACCTGTTTCCTTACCTGCTCGCTTACATCCTTGCTTGCGTGCTTGGCT
GCTTTGGGTGTTTCTTTTGTGTTTTCCTTCCGTGGGTACCCAAGAGATGC
ATGAAGTGTTCGATGCCGCTTCCTGTTGTGAGGGGAGGCGGGGGGGGGGG
GGGGGGGGGGGTCGTTTGTTTGTGGCGGGGGGGGGGGGGGGGGGGGGAGG
AGGGGGGGGGGGGGGGAATCAAAGGAAATGTGTAAAAAACAACAGAGGTG
GTGAAAAAGAANNNNNNNNNNTTTTTTTTTTTTTTTTGTTGTTGGGTGTG
GGGGGGTGGGTGGTGGGGGGGGGTTGGGGGTGGGGGGGGGGGGGGGTGGG
GGGGGGGGGGGGGTGGTGGGGGGGGGGGGGGGGCATGCATGCTTGCTTGC
CGCGTGTTGGTGATGATGATGATGATGATGGTGGTGGTGGTATCACATGA
ACTGATCTCAACAAATCCACCGTTGGTGACAAAGATGAATAAACGAAAAC
GAAAGGGGGAAGAACAACAAAAAAACGGCTATAATACATTCCAAATACAG
TATATATATTTATTGTAACCCGCAAAAAAACGCCGGTTATTTGGTGGAAA
ACCCAACCCGTCAGGTTCTTGTACCGGCAGAAGCTGACCCAGCAACGCAT
GAGGAGCTTCCTCTCTGTGATGATGAAGCTCAAGAAGGCCAAGAACCTAG
ACCCGCGGCTGGAAGCCCTCATCGATAACGCCTTCTACACCTGCTGCCCT
CCGCCGAGGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10609:2714..7375+

>mRNA_S-dermatodea_contig10609.423.1 ID=mRNA_S-dermatodea_contig10609.423.1|Name=mRNA_S-dermatodea_contig10609.423.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1314bp|location=Sequence derived from alignment at S-dermatodea_contig10609:2714..7375+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGATGGAGGCGGTGACGGGGACGACGGGGAAGAAGGCGGCGGCGAGCA
CACCATCAGCCGCAACGCGCGCCTTACCCTGATGCTGGAGGACGAGCTTC
CGAGCTGTCACAACCAGGAGAGGGTTGACGATTTCGCGCAGGATGGAGGC
GGTGACGGGGACGACGGGGAAGAAGGCGGCGGCGAGCACACCATCAGCCG
CAACGCGCGCCTTACCCTGATGCTGGAGGACGAGCTTCCGAGCTGTCACA
ACCAGGAGAGGGTTGACGATTTCGCGAAAAAGTTCTGCTACGTCAACAGC
AAGGGAGCCAGGAAGCGCCTCGTCGCCGCGCTCTTCGGCGTCCCGCGGCA
GGATTTAGACCTGCTGCCCATGTACGCCAGGCTGGTGGCCATCCTAGACA
AGAAAAAGTTCTGCTACGTCAACAGCAAGGGAGCCAGGAAGCGCCTCGTC
GCCGCGCTCTTCGGCGTCCCGCGGCAGGATTTAGACCTGCTGCCCATGTA
CGCCAGGCTGGTGGCCATCCTAGACAAGCAGGCGATGAAGAGCATCGCAC
CGGCGCTTCTCGACGAACTCAGGAGTCACTTCAGCAGGCGATGAAGAGCA
TCGCACCGGCGCTTCTCGACGAACTCAGGAGTCACTTCAGGTACTTCCTC
CGAAAAAAGGCGCCGGGGCAGATCGACCACCGCATCAAGAACGTTCGATT
TATCGGCGAGCTTGTCAAGTTTAGGGTACTTCCTCCGAAAAAAGGCGCCG
GGGCAGATCGACCACCGCATCAAGAACGTTCGATTTATCGGCGAGCTTGT
CAAGTTTAGGGTGGCGCCTCCGGTGGTGGCGTTCCAGTGCCTGAAGGCGT
GTCTGGACGTCTTTAGCTCCCTCTCGGTGCAGACCATGACTTCCCTCCTC
GAGACCTGTGGCAGGTGGCGCCTCCGGTGGTGGCGTTCCAGTGCCTGAAG
GCGTGTCTGGACGTCTTTAGCTCCCTCTCGGTGCAGACCATGACTTCCCT
CCTCGAGACCTGTGGCAGGTTCTTGTACCGGCAGAAGCTGACCCAGCAAC
GCATGAGGAGCTTCCTCTCTGTGATGATGAAGCTCAAGAAGGCCAAGAAC
CTAGACCCGCGGCTGGAAGCCCTCATCGATAACGCCTTCTACACCTGCTG
CCCTCCGCCGAGGTGAGTTCTTGTACCGGCAGAAGCTGACCCAGCAACGC
ATGAGGAGCTTCCTCTCTGTGATGATGAAGCTCAAGAAGGCCAAGAACCT
AGACCCGCGGCTGGAAGCCCTCATCGATAACGCCTTCTACACCTGCTGCC
CTCCGCCGAGGTGA
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