prot_S-dermatodea_contig10596.415.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig10596.415.1
Unique Nameprot_S-dermatodea_contig10596.415.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length69
Homology
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BLAST of mRNA_S-dermatodea_contig10596.415.1 vs. uniprot
Match: A0A835YK41_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK41_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 2.650e-9
Identity = 30/68 (44.12%), Postives = 45/68 (66.18%), Query Frame = 0 
Query:    1 RRLAACLVTWEMAANAPAQVSIRMSDFVHGIVPIVHDSRLQVRETAAKALTICLDMIWKRPARFILDW 68
            RRLAACLV  E+AANAP  + +++ DF    +P + D+   +R TAA+AL  CL ++ +R +R  L+W
Sbjct:  212 RRLAACLVLRELAANAPTTLYVKIRDFFERAMPALADAHEAIRVTAAEALATCLAILAQRRSRHHLNW 279
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BLAST of mRNA_S-dermatodea_contig10596.415.1 vs. uniprot
Match: W7TTW6_9STRA (Protein atypical group (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TTW6_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 5.380e-5
Identity = 27/68 (39.71%), Postives = 39/68 (57.35%), Query Frame = 0 
Query:    1 RRLAACLVTWEMAANAPAQVSIRMSDFVHGIVPIVHDSRLQVRETAAKALTICLDMIWKRPARFILDW 68
            RRLAAC V  E+AANAP     +  DF+  +   + D +  +R  AA+AL+ CL M+  R A   ++W
Sbjct:  156 RRLAACFVLKELAANAPTLFYAKTGDFLDRVWVALRDQKPIIRLNAARALSGCLRMLSTRSALNHVNW 223
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10596.415.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YK41_9STRA2.650e-944.12Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
W7TTW6_9STRA5.380e-539.71Protein atypical group (Fragment) n=1 Tax=Nannochl... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 1..61
e-value: 1.7E-5
score: 26.3
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..68
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..10
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 11..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10596contigS-dermatodea_contig10596:7521..7727 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10596.415.1mRNA_S-dermatodea_contig10596.415.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig10596 7521..7727 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig10596.415.1 ID=prot_S-dermatodea_contig10596.415.1|Name=mRNA_S-dermatodea_contig10596.415.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=69bp
RRLAACLVTWEMAANAPAQVSIRMSDFVHGIVPIVHDSRLQVRETAAKAL
TICLDMIWKRPARFILDW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like