mRNA_S-dermatodea_contig10596.415.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10596.415.1
Unique NamemRNA_S-dermatodea_contig10596.415.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10596.415.1 vs. uniprot
Match: A0A835YK41_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK41_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 2.650e-9
Identity = 30/68 (44.12%), Postives = 45/68 (66.18%), Query Frame = 1 
Query:    1 RRLAACLVTWEMAANAPAQVSIRMSDFVHGIVPIVHDSRLQVRETAAKALTICLDMIWKRPARFILDW 204
            RRLAACLV  E+AANAP  + +++ DF    +P + D+   +R TAA+AL  CL ++ +R +R  L+W
Sbjct:  212 RRLAACLVLRELAANAPTTLYVKIRDFFERAMPALADAHEAIRVTAAEALATCLAILAQRRSRHHLNW 279
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BLAST of mRNA_S-dermatodea_contig10596.415.1 vs. uniprot
Match: W7TTW6_9STRA (Protein atypical group (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TTW6_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 5.380e-5
Identity = 27/68 (39.71%), Postives = 39/68 (57.35%), Query Frame = 1 
Query:    1 RRLAACLVTWEMAANAPAQVSIRMSDFVHGIVPIVHDSRLQVRETAAKALTICLDMIWKRPARFILDW 204
            RRLAAC V  E+AANAP     +  DF+  +   + D +  +R  AA+AL+ CL M+  R A   ++W
Sbjct:  156 RRLAACFVLKELAANAPTLFYAKTGDFLDRVWVALRDQKPIIRLNAARALSGCLRMLSTRSALNHVNW 223
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10596.415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YK41_9STRA2.650e-944.12Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
W7TTW6_9STRA5.380e-539.71Protein atypical group (Fragment) n=1 Tax=Nannochl... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10596contigS-dermatodea_contig10596:7521..7727 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score60.1
Seed ortholog evalue4.8e-07
Seed eggNOG ortholog3218.PP1S448_6V6.1
Preferred nameTOR
KEGG koko:K07203
KEGG Pathwayko01521,ko01522,ko04012,ko04066,ko04072,ko04136,ko04138,ko04139,ko04140,ko04150,ko04151,ko04152,ko04211,ko04212,ko04213,ko04218,ko04371,ko04630,ko04659,ko04714,ko04910,ko04919,ko04920,ko04930,ko04931,ko05165,ko05167,ko05200,ko05205,ko05206,ko05210,ko05212,ko05214,ko05215,ko05221,ko05224,ko05225,ko05226,ko05230,ko05231,map01521,map01522,map04012,map04066,map04072,map04136,map04138,map04139,map04140,map04150,map04151,map04152,map04211,map04212,map04213,map04218,map04371,map04630,map04659,map04714,map04910,map04919,map04920,map04930,map04931,map05165,map05167,map05200,map05205,map05206,map05210,map05212,map05214,map05215,map05221,map05224,map05225,map05226,map05230,map05231
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360
EggNOG free text desc.serine threonine-protein kinase
EggNOG OGs37JFK@33090,3GFWB@35493,COG5032@1,KOG0891@2759
EC2.7.11.1
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko04131
Hectar predicted targeting categorysignal peptide
Exons1
Model size207
Cds size207
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924164.5462873-CDS-S-dermatodea_contig10596:7520..77271622924164.5462873-CDS-S-dermatodea_contig10596:7520..7727Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10596 7521..7727 -
1694079061.8007793-CDS-S-dermatodea_contig10596:7520..77271694079061.8007793-CDS-S-dermatodea_contig10596:7520..7727Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10596 7521..7727 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10596.415.1prot_S-dermatodea_contig10596.415.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10596 7521..7727 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10596.415.1

>prot_S-dermatodea_contig10596.415.1 ID=prot_S-dermatodea_contig10596.415.1|Name=mRNA_S-dermatodea_contig10596.415.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=69bp
RRLAACLVTWEMAANAPAQVSIRMSDFVHGIVPIVHDSRLQVRETAAKAL
TICLDMIWKRPARFILDW*
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mRNA from alignment at S-dermatodea_contig10596:7521..7727-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10596.415.1 ID=mRNA_S-dermatodea_contig10596.415.1|Name=mRNA_S-dermatodea_contig10596.415.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=207bp|location=Sequence derived from alignment at S-dermatodea_contig10596:7521..7727- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGGAGGCTGGCGGCGTGCCTGGTTACCTGGGAGATGGCAGCTAACGCCCC
CGCTCAGGTTTCCATTCGCATGAGCGACTTCGTGCACGGCATCGTGCCGA
TCGTGCACGACTCTCGACTGCAAGTGAGAGAGACGGCGGCGAAGGCGCTG
ACGATATGCCTGGACATGATCTGGAAGCGGCCCGCGAGGTTCATCTTGGA
TTGGTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10596:7521..7727-

>mRNA_S-dermatodea_contig10596.415.1 ID=mRNA_S-dermatodea_contig10596.415.1|Name=mRNA_S-dermatodea_contig10596.415.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at S-dermatodea_contig10596:7521..7727- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGGAGGCTGGCGGCGTGCCTGGTTACCTGGGAGATGGCAGCTAACGCCCC
CGCTCAGGTTTCCATTCGCATGAGCGACTTCGTGCACGGCATCGTGCCGA
TCGTGCACGACTCTCGACTGCAAGTGAGAGAGACGGCGGCGAAGGCGCTG
ACGATATGCCTGGACATGATCTGGAAGCGGCCCGCGAGGTTCATCTTGGA
TTGGTAACGGAGGCTGGCGGCGTGCCTGGTTACCTGGGAGATGGCAGCTA
ACGCCCCCGCTCAGGTTTCCATTCGCATGAGCGACTTCGTGCACGGCATC
GTGCCGATCGTGCACGACTCTCGACTGCAAGTGAGAGAGACGGCGGCGAA
GGCGCTGACGATATGCCTGGACATGATCTGGAAGCGGCCCGCGAGGTTCA
TCTTGGATTGGTAA
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