prot_S-dermatodea_contig10594.414.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-dermatodea_contig10594.414.1
Unique Name	prot_S-dermatodea_contig10594.414.1
Type	polypeptide
Organism	Saccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length	118

Homology

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BLAST of mRNA_S-dermatodea_contig10594.414.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.420e-19
Identity = 46/94 (48.94%), Postives = 63/94 (67.02%), Query Frame = 0

Query:    1 MGPMTPEALGGYKYVSNISDEHTKWTETYLLKSKHDALSSFQPFVHPVAFPSDFRVERLRANKGGGYIGNEFKYYFRLQTGVTLEYASTNTLQQ 94
            MGP++  ALGG++YV+ + DE TKW ET+L+K+K DA+ + Q F   +  P+ FR++ LR +KG      EF+ Y  LQ G  LEYASTNT QQ
Sbjct:    1 MGPISLPALGGFRYVNKLVDEKTKWKETFLMKTKRDAIKALQLFNQSLVVPTRFRLDCLRGDKGTECTCREFREYC-LQIGAKLEYASTNTPQQ 93

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BLAST of mRNA_S-dermatodea_contig10594.414.1 vs. uniprot
Match: A0A6H5JT61_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT61_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.080e-12
Identity = 37/95 (38.95%), Postives = 58/95 (61.05%), Query Frame = 0

Query:    1 MGPMTPEALGGYKYVSNISDEHTKWTETYLLKSKHDALSSFQPFVHPVAFPSDFRVERLRANKGGGYIGNEFKYYFRLQTGVTLEYASTNTLQQS 95
            MG  TP A GG+ YVS  +D +++  E YLLK+K + + +   +   VA P    +E +R ++G   + NEF  Y  + +G+T+EYA+TNT QQ+
Sbjct:  174 MGKTTPLAKGGFGYVSMFNDAYSRIKEIYLLKAKSETVRALHAYNMQVAAPLGRGIEIIRCDRGRENVANEFTTYC-MDSGITIEYAATNTPQQN 267

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BLAST of mRNA_S-dermatodea_contig10594.414.1 vs. uniprot
Match: A0A6H5KHY1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHY1_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 2.930e-12
Identity = 38/98 (38.78%), Postives = 56/98 (57.14%), Query Frame = 0

Query:    1 MGPMTPEAL---GGYKYVSNISDEHTKWTETYLLKSKHDALSSFQPFVHPVAFPSDFRVERLRANKGGGYIGNEFKYYFRLQTGVTLEYASTNTLQQS 95
            MGP+ P A    G + Y   I+D++TK  E YLL+ K D   +   +   VA    + +E +R +KGG   G+EF+ Y +  + + LEYA+TNT QQS
Sbjct:   58 MGPVNPPAKNKGGFFPYECKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYLIETIRCDKGGEKTGSEFRDYCK-NSAIKLEYAATNTPQQS 154

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BLAST of mRNA_S-dermatodea_contig10594.414.1 vs. uniprot
Match: A0A6H5K611_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K611_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 4.190e-11
Identity = 34/86 (39.53%), Postives = 50/86 (58.14%), Query Frame = 0

Query:   10 GGYKYVSNISDEHTKWTETYLLKSKHDALSSFQPFVHPVAFPSDFRVERLRANKGGGYIGNEFKYYFRLQTGVTLEYASTNTLQQS 95
            G + Y   I+D++TK  E YLL+ K D   +       VA    +R+E +R +KGG   G+EF+ Y +  + + LEYA+TNT QQS
Sbjct:  255 GSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTCNMRVAAAGGYRIETIRCDKGGENTGSEFRDYCK-NSAIKLEYAATNTPQQS 339

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BLAST of mRNA_S-dermatodea_contig10594.414.1 vs. uniprot
Match: A0A2R6PCF8_9APHY (Uncharacterized protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6PCF8_9APHY)

HSP 1 Score: 68.6 bits (166), Expect = 4.690e-11
Identity = 39/120 (32.50%), Postives = 61/120 (50.83%), Query Frame = 0

Query:    2 GPMTPEALGGYKYVSNISDEHTKWTETYLLKSKHDALSSFQPFVHPVAFPSDFRVERLRANKGGGYIGNEFKYYF-------RLQTGVTLEYASTNTLQQSVCPTAWEERSRLWFDACLP 114
            GP   E LGG KY  + +D+H++WT TYL+++K +    +Q FV  +       V+ L +++GG Y+ NEF  Y        RL    T EY   N + + +  T   +   + FD+ LP
Sbjct:  601 GPAPVETLGGRKYYVSFTDDHSRWTVTYLMRTKDEVFRHYQSFVALMKAHHSVAVKLLHSDRGGEYLSNEFNTYLSEQGMKRRLTVHDTPEY---NGVAERLNRTLIMKVRAMLFDSGLP 717

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BLAST of mRNA_S-dermatodea_contig10594.414.1 vs. uniprot
Match: A0A4S4K8M5_9APHY (Uncharacterized protein (Fragment) n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4K8M5_9APHY)

HSP 1 Score: 66.2 bits (160), Expect = 2.880e-10
Identity = 29/78 (37.18%), Postives = 45/78 (57.69%), Query Frame = 0

Query:    2 GPMTPEALGGYKYVSNISDEHTKWTETYLLKSKHDALSSFQPFVHPVAFPSDFRVERLRANKGGGYIGNEFKYYFRLQ 79
            GP   E LGG KY  + +D+H++WT TYL+++K +    +Q FV  +       V+ L +++GG Y+ NEF  Y   Q
Sbjct:  601 GPAPVETLGGRKYYVSFTDDHSRWTVTYLMRTKDEVFRHYQSFVALMKAHHGVAVKLLHSDRGGEYLSNEFNTYLSEQ 678

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BLAST of mRNA_S-dermatodea_contig10594.414.1 vs. uniprot
Match: A0A811RG30_9POAL (Hypothetical protein n=1 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811RG30_9POAL)

HSP 1 Score: 62.8 bits (151), Expect = 4.690e-9
Identity = 27/70 (38.57%), Postives = 44/70 (62.86%), Query Frame = 0

Query:    2 GPMTPEALGGYKYVSNISDEHTKWTETYLLKSKHDALSSFQPFVHPVAFPSDFRVERLRANKGGGYIGNE 71
            GP+TPE  GG KY   + D+H++W E ++LKSK  AL +F  +   V   S  +++ LR+++GG ++  E
Sbjct:  394 GPITPETAGGNKYFILLVDDHSRWMEVHMLKSKDQALIAFVKYKAQVENESGCKIKTLRSDRGGEFLNAE 463

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BLAST of mRNA_S-dermatodea_contig10594.414.1 vs. uniprot
Match: A0A4S4K6Y8_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4K6Y8_9APHY)

HSP 1 Score: 57.8 bits (138), Expect = 2.400e-7
Identity = 27/78 (34.62%), Postives = 40/78 (51.28%), Query Frame = 0

Query:    2 GPMTPEALGGYKYVSNISDEHTKWTETYLLKSKHDALSSFQPFVHPVAFPSDFRVERLRANKGGGYIGNEFKYYFRLQ 79
            GP   + LGG KY  + +D H++WT TYL+ +K      +Q FV  +       V+ L  ++GG Y+ N F  Y   Q
Sbjct:  259 GPAPVKTLGGRKYYVSFTDNHSRWTMTYLMWTKDKVFHHYQSFVALMKAHHGVAVKLLHLDQGGEYLSNRFNTYLSEQ 336

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BLAST of mRNA_S-dermatodea_contig10594.414.1 vs. uniprot
Match: A0A1M2VVQ4_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VVQ4_TRAPU)

HSP 1 Score: 57.4 bits (137), Expect = 3.660e-7
Identity = 30/94 (31.91%), Postives = 52/94 (55.32%), Query Frame = 0

Query:    2 GPMTPEALGGYKYVSNISDEHTKWTETYLLKSKHDALSSFQPFVHPVAFPSDFRVERLRANKGGGYIGNEFKYYFRLQTGVTLEYASTNTLQQS 95
            GP     +GG KY  + +D+ T+++  YLL+SK +A  SF+ F   +      R+  L  ++GG Y+ NEFK Y   Q G+  + +  +T +++
Sbjct:  655 GPARVVTIGGRKYYISFTDDKTRFSTLYLLRSKSEAFDSFKAFEAWLERHHGARICFLNIDRGGEYLSNEFKDYLE-QHGIEYKLSVHDTSEEA 747

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BLAST of mRNA_S-dermatodea_contig10594.414.1 vs. uniprot
Match: A0A1M2VBJ6_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VBJ6_TRAPU)

HSP 1 Score: 57.4 bits (137), Expect = 3.690e-7
Identity = 30/94 (31.91%), Postives = 52/94 (55.32%), Query Frame = 0

Query:    2 GPMTPEALGGYKYVSNISDEHTKWTETYLLKSKHDALSSFQPFVHPVAFPSDFRVERLRANKGGGYIGNEFKYYFRLQTGVTLEYASTNTLQQS 95
            GP     +GG KY  + +D+ T+++  YLL+SK +A  SF+ F   +      R+  L  ++GG Y+ NEFK Y   Q G+  + +  +T +++
Sbjct:  126 GPARVVTIGGRKYYISFTDDKTRFSTLYLLRSKSEAFDSFKAFEAWLERHHGARICFLNIDRGGEYLSNEFKDYLE-QHGIEYKLSVHDTSEEA 218

The following BLAST results are available for this feature:

BLAST of mRNA_S-dermatodea_contig10594.414.1 vs. uniprot

BLAST of mRNA_S-dermatodea_contig10594.414.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5L6R7_9PHAE	1.420e-19	48.94	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JT61_9PHAE	1.080e-12	38.95	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KHY1_9PHAE	2.930e-12	38.78	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5K611_9PHAE	4.190e-11	39.53	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A2R6PCF8_9APHY	4.690e-11	32.50	Uncharacterized protein n=1 Tax=Hermanssonia centr...	[more]
A0A4S4K8M5_9APHY	2.880e-10	37.18	Uncharacterized protein (Fragment) n=1 Tax=Hermans...	[more]
A0A811RG30_9POAL	4.690e-9	38.57	Hypothetical protein n=1 Tax=Miscanthus lutariorip...	[more]
A0A4S4K6Y8_9APHY	2.400e-7	34.62	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A1M2VVQ4_TRAPU	3.660e-7	31.91	Retrovirus-related Pol polyprotein from transposon...	[more]
A0A1M2VBJ6_TRAPU	3.690e-7	31.91	Retrovirus-related Pol polyprotein from transposon...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..97 e-value: 8.0E-6 score: 27.4
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 6..94

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-dermatodea_contig10594	contig	S-dermatodea_contig10594:4218..4571 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-dermatodea_contig10594.414.1	mRNA_S-dermatodea_contig10594.414.1	Saccorhiza dermatodea SderLu1190fm monoicous	mRNA	S-dermatodea_contig10594 3993..4591 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-dermatodea_contig10594.414.1 ID=prot_S-dermatodea_contig10594.414.1|Name=mRNA_S-dermatodea_contig10594.414.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=118bp
MGPMTPEALGGYKYVSNISDEHTKWTETYLLKSKHDALSSFQPFVHPVAF
PSDFRVERLRANKGGGYIGNEFKYYFRLQTGVTLEYASTNTLQQSVCPTA
WEERSRLWFDACLPTAG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR012337	RNaseH-like_sf