mRNA_S-dermatodea_contig10594.414.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig10594.414.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE) HSP 1 Score: 141 bits (356), Expect = 3.120e-36 Identity = 72/163 (44.17%), Postives = 98/163 (60.12%), Query Frame = 1
Query: 19 SASLWHRRLGHLKHKSLDLVKKHDSNGVTFDRAVADCDVCPVGKSHQLTHRKPTDDKVKPLFQLVFTGLMGPMTPEALGGYKYVSNISDEHTKWTETYLLKSKHDALSSFQPFVHPVAFPSDFRVERLRANKGGGYIGNEFKYYFRLQTGVTLEYASTNTLQQ 507
SA+LWHRR+GH+ +SLD+++K NGV ++ ++ CDVC VG S Q H K FQLV T LMGP +P ALGG+ Y+ D+H KW E +L+K K + + Q F V P + R+E +RA+KGG Y F Y R G+ L +ASTNT Q+
Sbjct: 265 SAALWHRRVGHVHGRSLDILRKVQGNGVEYNGELSACDVCAVGNSKQQNHPKRASYDASRPFQLVTTDLMGPFSPPALGGFLYIKKFVDQHIKWNEVFLMKEKSATVDALQLFNQSVLTPHELRLECVRADKGGEYTSWAFCKYCR-DVGIKLLFASTNTPQR 426
BLAST of mRNA_S-dermatodea_contig10594.414.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE) HSP 1 Score: 136 bits (342), Expect = 1.670e-33 Identity = 66/163 (40.49%), Postives = 96/163 (58.90%), Query Frame = 1
Query: 19 SASLWHRRLGHLKHKSLDLVKKHDSNGVTFDRAVADCDVCPVGKSHQLTHRKPTDDKVKPLFQLVFTGLMGPMTPEALGGYKYVSNISDEHTKWTETYLLKSKHDALSSFQPFVHPVAFPSDFRVERLRANKGGGYIGNEFKYYFRLQTGVTLEYASTNTLQQ 507
+A LWHRR+GH+ +KSLD++++ ++G+ + V DC CP+GKS Q H K V FQLVF +GP TP ALGG+KY + D+HTKW E L+K K ++ + + F P R+ LRA+KG + ++ Y L G+ L++AS NT Q
Sbjct: 572 TADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYC-LDVGIQLQFASPNTPHQ 733
BLAST of mRNA_S-dermatodea_contig10594.414.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 136 bits (342), Expect = 1.740e-33 Identity = 66/163 (40.49%), Postives = 96/163 (58.90%), Query Frame = 1
Query: 19 SASLWHRRLGHLKHKSLDLVKKHDSNGVTFDRAVADCDVCPVGKSHQLTHRKPTDDKVKPLFQLVFTGLMGPMTPEALGGYKYVSNISDEHTKWTETYLLKSKHDALSSFQPFVHPVAFPSDFRVERLRANKGGGYIGNEFKYYFRLQTGVTLEYASTNTLQQ 507
+A LWHRR+GH+ +KSLD++++ ++G+ + V DC CP+GKS Q H K V FQLVF +GP TP ALGG+KY + D+HTKW E L+K K ++ + + F P R+ LRA+KG + ++ Y L G+ L++AS NT Q
Sbjct: 694 TADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYC-LDVGIQLQFASPNTPHQ 855
BLAST of mRNA_S-dermatodea_contig10594.414.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE) HSP 1 Score: 136 bits (342), Expect = 1.740e-33 Identity = 66/163 (40.49%), Postives = 96/163 (58.90%), Query Frame = 1
Query: 19 SASLWHRRLGHLKHKSLDLVKKHDSNGVTFDRAVADCDVCPVGKSHQLTHRKPTDDKVKPLFQLVFTGLMGPMTPEALGGYKYVSNISDEHTKWTETYLLKSKHDALSSFQPFVHPVAFPSDFRVERLRANKGGGYIGNEFKYYFRLQTGVTLEYASTNTLQQ 507
+A LWHRR+GH+ +KSLD++++ ++G+ + V DC CP+GKS Q H K V FQLVF +GP TP ALGG+KY + D+HTKW E L+K K ++ + + F P R+ LRA+KG + ++ Y L G+ L++AS NT Q
Sbjct: 572 TADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYC-LDVGIQLQFASPNTPHQ 733
BLAST of mRNA_S-dermatodea_contig10594.414.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE) HSP 1 Score: 134 bits (338), Expect = 5.770e-33 Identity = 70/163 (42.94%), Postives = 94/163 (57.67%), Query Frame = 1
Query: 19 SASLWHRRLGHLKHKSLDLVKKHDSNGVTFDRAVADCDVCPVGKSHQLTHRKPTDDKVKPLFQLVFTGLMGPMTPEALGGYKYVSNISDEHTKWTETYLLKSKHDALSSFQPFVHPVAFPSDFRVERLRANKGGGYIGNEFKYYFRLQTGVTLEYASTNTLQQ 507
SA+LWHRR+GH+ KSLD+++K +NGV V DC C +GKS Q H K VK FQLVF +GP TP ALGG+KY + D+ TKW E L+K K ++ S F P+ + LR + G + EF+ Y++ G+ LE+AS NT QQ
Sbjct: 525 SANLWHRRMGHINSKSLDILRKAPNNGVDHTEDVKDCGPCALGKSTQQPHPKEATYDVKRPFQLVFVDTLGPFTPTALGGFKYATKFVDQQTKWAEIGLMKDKTCSVDSLALFNKGTVVPTGEGIHCLRGDHGTEFTSAEFRQYYQ-DIGIKLEFASPNTPQQ 686
BLAST of mRNA_S-dermatodea_contig10594.414.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE) HSP 1 Score: 129 bits (325), Expect = 3.000e-31 Identity = 69/163 (42.33%), Postives = 92/163 (56.44%), Query Frame = 1
Query: 19 SASLWHRRLGHLKHKSLDLVKKHDSNGVTFDRAVADCDVCPVGKSHQLTHRKPTDDKVKPLFQLVFTGLMGPMTPEALGGYKYVSNISDEHTKWTETYLLKSKHDALSSFQPFVHPVAFPSDFRVERLRANKGGGYIGNEFKYYFRLQTGVTLEYASTNTLQQ 507
SA LWHRR+GH+ KSLD+++K NGV + V DC VCP+GKS Q H K V FQ V +GP TP ALGG+KY + D+ TKW E L+K + ++ S F P+ R+ LR + G + EF+ Y + G+ LE+AS NT QQ
Sbjct: 285 SADLWHRRMGHINGKSLDVLRKEPVNGVDYTGNVNDCCVCPLGKSAQQPHPKQVTYGVLRPFQHVSVDTLGPFTPTALGGFKYATKFVDQQTKWAEIVLMKDQACSVDSLALFKKGTVVPTGERIHCLRGDPGTEFTSAEFRQYCQ-DIGIKLEFASPNTPQQ 446
BLAST of mRNA_S-dermatodea_contig10594.414.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE) HSP 1 Score: 127 bits (319), Expect = 2.030e-30 Identity = 64/164 (39.02%), Postives = 91/164 (55.49%), Query Frame = 1
Query: 19 SASLWHRRLGHLKHKSLDLVKKHDSNGVTFDRAVADCDVCPVGKSHQLTHRKPTDDKVKPLFQLVFTGLMGPMTPEALGGYKYVSNISDEHTKWTETYLLKSKHD-ALSSFQPFVHPVAFPSDFRVERLRANKGGGYIGNEFKYYFRLQTGVTLEYASTNTLQQ 507
+A LWHRR+GH+ +KSLD++++ ++G+ + V DC CP+GKS Q H K V FQLVF GP T LGG+KY + D+HTKW E L+K K ++ + F P R+ LRA KG + ++ Y L G+ L++AS NT Q
Sbjct: 477 TADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTFGPFTSTTLGGFKYATKFVDQHTKWKEVVLMKDKTSCSIDGLELFNKGTVIPRSARIHVLRAGKGAEFTNAAYRQYC-LDVGIQLQFASPNTPHQ 639
BLAST of mRNA_S-dermatodea_contig10594.414.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE) HSP 1 Score: 120 bits (300), Expect = 3.350e-30 Identity = 64/166 (38.55%), Postives = 94/166 (56.63%), Query Frame = 1
Query: 19 SASLWHRRLGHLKHKSLDLVKKHDSNGVTFDRAVADCDVCPVGKSHQLTHRKPTDDKVKPLFQLVFTGLMGPMTPEAL---GGYKYVSNISDEHTKWTETYLLKSKHDALSSFQPFVHPVAFPSDFRVERLRANKGGGYIGNEFKYYFRLQTGVTLEYASTNTLQQ 507
SA WHRRLGHL +SLD+++K GV + +++ C VC + K Q H K + ++ QLV MGP+ P A G + Y I+D++TK E YLL+ K D + + VA +R+E +R +KGG G+EF+ Y + + + LEYA+TNT QQ
Sbjct: 41 SADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCK-NSAIKLEYAATNTPQQ 205
BLAST of mRNA_S-dermatodea_contig10594.414.1 vs. uniprot
Match: A0A6H5JT61_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT61_9PHAE) HSP 1 Score: 124 bits (312), Expect = 1.620e-29 Identity = 64/164 (39.02%), Postives = 99/164 (60.37%), Query Frame = 1
Query: 19 SASLWHRRLGHLKHKSLDLVKKHDSNGVTFDRAVADCDVCPVGKSHQLTHRKPTDDKVKPLFQLVFTGLMGPMTPEALGGYKYVSNISDEHTKWTETYLLKSKHDALSSFQPFVHPVAFPSDFRVERLRANKGGGYIGNEFKYYFRLQTGVTLEYASTNTLQQS 510
+A+ HRRLGHL +S+ L++K + N V F ++ CD+C + KS QL H K T + LV+T +MG TP A GG+ YVS +D +++ E YLLK+K + + + + VA P +E +R ++G + NEF Y + +G+T+EYA+TNT QQ+
Sbjct: 105 NANTPHRRLGHLNFRSMKLLRKKEENEVDFSDSMTPCDICAISKSTQLAHPKKTSRETTAPMLLVYTDIMGKTTPLAKGGFGYVSMFNDAYSRIKEIYLLKAKSETVRALHAYNMQVAAPLGRGIEIIRCDRGRENVANEFTTYC-MDSGITIEYAATNTPQQN 267
BLAST of mRNA_S-dermatodea_contig10594.414.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE) HSP 1 Score: 120 bits (302), Expect = 3.300e-28 Identity = 64/166 (38.55%), Postives = 94/166 (56.63%), Query Frame = 1
Query: 19 SASLWHRRLGHLKHKSLDLVKKHDSNGVTFDRAVADCDVCPVGKSHQLTHRKPTDDKVKPLFQLVFTGLMGPMTPEAL---GGYKYVSNISDEHTKWTETYLLKSKHDALSSFQPFVHPVAFPSDFRVERLRANKGGGYIGNEFKYYFRLQTGVTLEYASTNTLQQ 507
SA WHRRLGHL +SLD+++K GV + +++ C VC + K Q H K + ++ QLV MGP+ P A G + Y I+D++TK E YLL+ K D + + VA +R+E +R +KGG G+EF+ Y + + + LEYA+TNT QQ
Sbjct: 417 SADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCK-NSAIKLEYAATNTPQQ 581 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10594.414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig10594.414.1 >prot_S-dermatodea_contig10594.414.1 ID=prot_S-dermatodea_contig10594.414.1|Name=mRNA_S-dermatodea_contig10594.414.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=118bp MGPMTPEALGGYKYVSNISDEHTKWTETYLLKSKHDALSSFQPFVHPVAFback to top mRNA from alignment at S-dermatodea_contig10594:3993..4591+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig10594.414.1 ID=mRNA_S-dermatodea_contig10594.414.1|Name=mRNA_S-dermatodea_contig10594.414.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=599bp|location=Sequence derived from alignment at S-dermatodea_contig10594:3993..4591+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig10594:3993..4591+ >mRNA_S-dermatodea_contig10594.414.1 ID=mRNA_S-dermatodea_contig10594.414.1|Name=mRNA_S-dermatodea_contig10594.414.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at S-dermatodea_contig10594:3993..4591+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |