prot_S-dermatodea_contig10555.388.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig10555.388.1
Unique Nameprot_S-dermatodea_contig10555.388.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length72
Homology
BLAST of mRNA_S-dermatodea_contig10555.388.1 vs. uniprot
Match: D8LRW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRW3_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 8.180e-30
Identity = 57/68 (83.82%), Postives = 65/68 (95.59%), Query Frame = 0
Query:    1 VTVAIKKLRTKRRVALTGSPLQNNLVEYYTMVDFVRKGMLGDVDRFKSYFEAPILNGMLIDSSHHDVK 68
            VT AIKK+RT+RRVALTGSPLQNNLVEYYTMVDFVRKGMLG ++RFK+YFEAPI+NGML+DSS +DVK
Sbjct: 1983 VTQAIKKIRTRRRVALTGSPLQNNLVEYYTMVDFVRKGMLGTLERFKNYFEAPIVNGMLVDSSPYDVK 2050          
BLAST of mRNA_S-dermatodea_contig10555.388.1 vs. uniprot
Match: A0A6H5KF11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF11_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 2.840e-29
Identity = 56/68 (82.35%), Postives = 65/68 (95.59%), Query Frame = 0
Query:    1 VTVAIKKLRTKRRVALTGSPLQNNLVEYYTMVDFVRKGMLGDVDRFKSYFEAPILNGMLIDSSHHDVK 68
            VT AIKK+RT+RRVALTGSPLQNNLVEYYTMVDFVR+GMLG ++RFK+YFEAPI+NGML+DSS +DVK
Sbjct: 1863 VTQAIKKIRTRRRVALTGSPLQNNLVEYYTMVDFVRQGMLGTLERFKNYFEAPIVNGMLVDSSPYDVK 1930          
BLAST of mRNA_S-dermatodea_contig10555.388.1 vs. uniprot
Match: A0A7S0QYE4_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0QYE4_9CHLO)

HSP 1 Score: 89.4 bits (220), Expect = 1.560e-20
Identity = 43/69 (62.32%), Postives = 53/69 (76.81%), Query Frame = 0
Query:    1 VTVAIKKLRTKRRVALTGSPLQNNLVEYYTMVDFVRKGMLGDVDRFKSYFEAPILNGMLIDSSHHDVKV 69
            +T A++  RT RRVALTGSPLQNNL+EYYTMVDFVR+G LG    F++ FEAPI NG  +DS+  DV +
Sbjct:   36 ITSALQGARTARRVALTGSPLQNNLMEYYTMVDFVRQGFLGSTADFRNRFEAPIKNGQHVDSNETDVSM 104          
BLAST of mRNA_S-dermatodea_contig10555.388.1 vs. uniprot
Match: A0A2I0WIJ2_9ASPA (ATP-dependent helicase ATRX n=4 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WIJ2_9ASPA)

HSP 1 Score: 90.9 bits (224), Expect = 1.120e-19
Identity = 41/69 (59.42%), Postives = 56/69 (81.16%), Query Frame = 0
Query:    1 VTVAIKKLRTKRRVALTGSPLQNNLVEYYTMVDFVRKGMLGDVDRFKSYFEAPILNGMLIDSSHHDVKV 69
            +T+A+K++RT+RR+ALTGSPLQNNL+EYY MVDFVR+G LG    F++ F+ PI NG   +S+ HDVK+
Sbjct:  891 ITLALKQVRTQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTAHDVKI 959          
BLAST of mRNA_S-dermatodea_contig10555.388.1 vs. uniprot
Match: A0A811MGK5_9POAL (ATP-dependent helicase ATRX n=2 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811MGK5_9POAL)

HSP 1 Score: 88.2 bits (217), Expect = 9.870e-19
Identity = 40/69 (57.97%), Postives = 55/69 (79.71%), Query Frame = 0
Query:    1 VTVAIKKLRTKRRVALTGSPLQNNLVEYYTMVDFVRKGMLGDVDRFKSYFEAPILNGMLIDSSHHDVKV 69
            +T A+K++RT+RR+ALTGSPLQNNL+EYY MVDFVR+G LG    F++ F+ PI NG  ++S+  DVK+
Sbjct:  886 ITQALKQVRTQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSTHEFRNRFQNPIENGQHMNSTSDDVKI 954          
BLAST of mRNA_S-dermatodea_contig10555.388.1 vs. uniprot
Match: A0A1B6QKI5_SORBI (ATP-dependent helicase ATRX n=4 Tax=Andropogoneae TaxID=147429 RepID=A0A1B6QKI5_SORBI)

HSP 1 Score: 88.2 bits (217), Expect = 9.870e-19
Identity = 40/69 (57.97%), Postives = 55/69 (79.71%), Query Frame = 0
Query:    1 VTVAIKKLRTKRRVALTGSPLQNNLVEYYTMVDFVRKGMLGDVDRFKSYFEAPILNGMLIDSSHHDVKV 69
            +T A+K++RT+RR+ALTGSPLQNNL+EYY MVDFVR+G LG    F++ F+ PI NG  ++S+  DVK+
Sbjct:  899 ITQALKQVRTQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSTHEFRNRFQNPIENGQHMNSTSDDVKI 967          
BLAST of mRNA_S-dermatodea_contig10555.388.1 vs. uniprot
Match: A0A1D6KU15_MAIZE (ATP-dependent helicase ATRX n=5 Tax=Zea mays TaxID=4577 RepID=A0A1D6KU15_MAIZE)

HSP 1 Score: 87.4 bits (215), Expect = 1.830e-18
Identity = 40/69 (57.97%), Postives = 54/69 (78.26%), Query Frame = 0
Query:    1 VTVAIKKLRTKRRVALTGSPLQNNLVEYYTMVDFVRKGMLGDVDRFKSYFEAPILNGMLIDSSHHDVKV 69
            +T A+K++RT+RR+ALTGSPLQNNL+EYY MVDFVR+G LG    F++ F+ PI NG   +S+  DVK+
Sbjct:  527 ITQALKQVRTQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSTHEFRNRFQNPIENGQHTNSTSDDVKI 595          
BLAST of mRNA_S-dermatodea_contig10555.388.1 vs. uniprot
Match: A0A1D6KU32_MAIZE (ATP-dependent helicase ATRX (Fragment) n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6KU32_MAIZE)

HSP 1 Score: 87.4 bits (215), Expect = 1.830e-18
Identity = 40/69 (57.97%), Postives = 54/69 (78.26%), Query Frame = 0
Query:    1 VTVAIKKLRTKRRVALTGSPLQNNLVEYYTMVDFVRKGMLGDVDRFKSYFEAPILNGMLIDSSHHDVKV 69
            +T A+K++RT+RR+ALTGSPLQNNL+EYY MVDFVR+G LG    F++ F+ PI NG   +S+  DVK+
Sbjct:  734 ITQALKQVRTQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSTHEFRNRFQNPIENGQHTNSTSDDVKI 802          
BLAST of mRNA_S-dermatodea_contig10555.388.1 vs. uniprot
Match: A0A1D6KU35_MAIZE (Chromatin complex subunit A n=2 Tax=Zea mays TaxID=4577 RepID=A0A1D6KU35_MAIZE)

HSP 1 Score: 87.4 bits (215), Expect = 1.830e-18
Identity = 40/69 (57.97%), Postives = 54/69 (78.26%), Query Frame = 0
Query:    1 VTVAIKKLRTKRRVALTGSPLQNNLVEYYTMVDFVRKGMLGDVDRFKSYFEAPILNGMLIDSSHHDVKV 69
            +T A+K++RT+RR+ALTGSPLQNNL+EYY MVDFVR+G LG    F++ F+ PI NG   +S+  DVK+
Sbjct:  899 ITQALKQVRTQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSTHEFRNRFQNPIENGQHTNSTSDDVKI 967          
BLAST of mRNA_S-dermatodea_contig10555.388.1 vs. uniprot
Match: A0A804LZ18_MAIZE (ATP-dependent helicase ATRX n=1 Tax=Zea mays TaxID=4577 RepID=A0A804LZ18_MAIZE)

HSP 1 Score: 87.4 bits (215), Expect = 1.840e-18
Identity = 40/69 (57.97%), Postives = 54/69 (78.26%), Query Frame = 0
Query:    1 VTVAIKKLRTKRRVALTGSPLQNNLVEYYTMVDFVRKGMLGDVDRFKSYFEAPILNGMLIDSSHHDVKV 69
            +T A+K++RT+RR+ALTGSPLQNNL+EYY MVDFVR+G LG    F++ F+ PI NG   +S+  DVK+
Sbjct:  703 ITQALKQVRTQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSTHEFRNRFQNPIENGQHTNSTSDDVKI 771          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10555.388.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRW3_ECTSI8.180e-3083.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KF11_9PHAE2.840e-2982.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0QYE4_9CHLO1.560e-2062.32Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
A0A2I0WIJ2_9ASPA1.120e-1959.42ATP-dependent helicase ATRX n=4 Tax=Dendrobium cat... [more]
A0A811MGK5_9POAL9.870e-1957.97ATP-dependent helicase ATRX n=2 Tax=Miscanthus lut... [more]
A0A1B6QKI5_SORBI9.870e-1957.97ATP-dependent helicase ATRX n=4 Tax=Andropogoneae ... [more]
A0A1D6KU15_MAIZE1.830e-1857.97ATP-dependent helicase ATRX n=5 Tax=Zea mays TaxID... [more]
A0A1D6KU32_MAIZE1.830e-1857.97ATP-dependent helicase ATRX (Fragment) n=1 Tax=Zea... [more]
A0A1D6KU35_MAIZE1.830e-1857.97Chromatin complex subunit A n=2 Tax=Zea mays TaxID... [more]
A0A804LZ18_MAIZE1.840e-1857.97ATP-dependent helicase ATRX n=1 Tax=Zea mays TaxID... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000330SNF2-related, N-terminal domainPFAMPF00176SNF2_Ncoord: 3..56
e-value: 2.2E-11
score: 43.1
IPR038718SNF2-like, N-terminal domain superfamilyGENE3D3.40.50.10810coord: 1..70
e-value: 1.0E-19
score: 72.3
NoneNo IPR availablePANTHERPTHR45797FAMILY NOT NAMEDcoord: 2..70
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 3..68

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10555contigS-dermatodea_contig10555:6740..6955 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10555.388.1mRNA_S-dermatodea_contig10555.388.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig10555 6740..6955 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig10555.388.1 ID=prot_S-dermatodea_contig10555.388.1|Name=mRNA_S-dermatodea_contig10555.388.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=72bp
VTVAIKKLRTKRRVALTGSPLQNNLVEYYTMVDFVRKGMLGDVDRFKSYF
EAPILNGMLIDSSHHDVKVCV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000330SNF2_N
IPR038718SNF2-like_sf
IPR027417P-loop_NTPase