mRNA_S-dermatodea_contig10555.388.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10555.388.1
Unique NamemRNA_S-dermatodea_contig10555.388.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig10555.388.1 vs. uniprot
Match: D8LRW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRW3_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 8.180e-30
Identity = 57/68 (83.82%), Postives = 65/68 (95.59%), Query Frame = 1 
Query:    1 VTVAIKKLRTKRRVALTGSPLQNNLVEYYTMVDFVRKGMLGDVDRFKSYFEAPILNGMLIDSSHHDVK 204
            VT AIKK+RT+RRVALTGSPLQNNLVEYYTMVDFVRKGMLG ++RFK+YFEAPI+NGML+DSS +DVK
Sbjct: 1983 VTQAIKKIRTRRRVALTGSPLQNNLVEYYTMVDFVRKGMLGTLERFKNYFEAPIVNGMLVDSSPYDVK 2050
[Close]
BLAST of mRNA_S-dermatodea_contig10555.388.1 vs. uniprot
Match: A0A6H5KF11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF11_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 2.840e-29
Identity = 56/68 (82.35%), Postives = 65/68 (95.59%), Query Frame = 1 
Query:    1 VTVAIKKLRTKRRVALTGSPLQNNLVEYYTMVDFVRKGMLGDVDRFKSYFEAPILNGMLIDSSHHDVK 204
            VT AIKK+RT+RRVALTGSPLQNNLVEYYTMVDFVR+GMLG ++RFK+YFEAPI+NGML+DSS +DVK
Sbjct: 1863 VTQAIKKIRTRRRVALTGSPLQNNLVEYYTMVDFVRQGMLGTLERFKNYFEAPIVNGMLVDSSPYDVK 1930
[Close]
BLAST of mRNA_S-dermatodea_contig10555.388.1 vs. uniprot
Match: A0A7S0QYE4_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0QYE4_9CHLO)

HSP 1 Score: 89.4 bits (220), Expect = 1.560e-20
Identity = 43/69 (62.32%), Postives = 53/69 (76.81%), Query Frame = 1 
Query:    1 VTVAIKKLRTKRRVALTGSPLQNNLVEYYTMVDFVRKGMLGDVDRFKSYFEAPILNGMLIDSSHHDVKV 207
            +T A++  RT RRVALTGSPLQNNL+EYYTMVDFVR+G LG    F++ FEAPI NG  +DS+  DV +
Sbjct:   36 ITSALQGARTARRVALTGSPLQNNLMEYYTMVDFVRQGFLGSTADFRNRFEAPIKNGQHVDSNETDVSM 104
[Close]
BLAST of mRNA_S-dermatodea_contig10555.388.1 vs. uniprot
Match: A0A2I0WIJ2_9ASPA (ATP-dependent helicase ATRX n=4 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WIJ2_9ASPA)

HSP 1 Score: 90.9 bits (224), Expect = 1.120e-19
Identity = 41/69 (59.42%), Postives = 56/69 (81.16%), Query Frame = 1 
Query:    1 VTVAIKKLRTKRRVALTGSPLQNNLVEYYTMVDFVRKGMLGDVDRFKSYFEAPILNGMLIDSSHHDVKV 207
            +T+A+K++RT+RR+ALTGSPLQNNL+EYY MVDFVR+G LG    F++ F+ PI NG   +S+ HDVK+
Sbjct:  891 ITLALKQVRTQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTAHDVKI 959
[Close]
BLAST of mRNA_S-dermatodea_contig10555.388.1 vs. uniprot
Match: A0A811MGK5_9POAL (ATP-dependent helicase ATRX n=2 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811MGK5_9POAL)

HSP 1 Score: 88.2 bits (217), Expect = 9.870e-19
Identity = 40/69 (57.97%), Postives = 55/69 (79.71%), Query Frame = 1 
Query:    1 VTVAIKKLRTKRRVALTGSPLQNNLVEYYTMVDFVRKGMLGDVDRFKSYFEAPILNGMLIDSSHHDVKV 207
            +T A+K++RT+RR+ALTGSPLQNNL+EYY MVDFVR+G LG    F++ F+ PI NG  ++S+  DVK+
Sbjct:  886 ITQALKQVRTQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSTHEFRNRFQNPIENGQHMNSTSDDVKI 954
[Close]
BLAST of mRNA_S-dermatodea_contig10555.388.1 vs. uniprot
Match: A0A1B6QKI5_SORBI (ATP-dependent helicase ATRX n=4 Tax=Andropogoneae TaxID=147429 RepID=A0A1B6QKI5_SORBI)

HSP 1 Score: 88.2 bits (217), Expect = 9.870e-19
Identity = 40/69 (57.97%), Postives = 55/69 (79.71%), Query Frame = 1 
Query:    1 VTVAIKKLRTKRRVALTGSPLQNNLVEYYTMVDFVRKGMLGDVDRFKSYFEAPILNGMLIDSSHHDVKV 207
            +T A+K++RT+RR+ALTGSPLQNNL+EYY MVDFVR+G LG    F++ F+ PI NG  ++S+  DVK+
Sbjct:  899 ITQALKQVRTQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSTHEFRNRFQNPIENGQHMNSTSDDVKI 967
[Close]
BLAST of mRNA_S-dermatodea_contig10555.388.1 vs. uniprot
Match: A0A1D6KU15_MAIZE (ATP-dependent helicase ATRX n=5 Tax=Zea mays TaxID=4577 RepID=A0A1D6KU15_MAIZE)

HSP 1 Score: 87.4 bits (215), Expect = 1.830e-18
Identity = 40/69 (57.97%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    1 VTVAIKKLRTKRRVALTGSPLQNNLVEYYTMVDFVRKGMLGDVDRFKSYFEAPILNGMLIDSSHHDVKV 207
            +T A+K++RT+RR+ALTGSPLQNNL+EYY MVDFVR+G LG    F++ F+ PI NG   +S+  DVK+
Sbjct:  527 ITQALKQVRTQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSTHEFRNRFQNPIENGQHTNSTSDDVKI 595
[Close]
BLAST of mRNA_S-dermatodea_contig10555.388.1 vs. uniprot
Match: A0A1D6KU32_MAIZE (ATP-dependent helicase ATRX (Fragment) n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6KU32_MAIZE)

HSP 1 Score: 87.4 bits (215), Expect = 1.830e-18
Identity = 40/69 (57.97%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    1 VTVAIKKLRTKRRVALTGSPLQNNLVEYYTMVDFVRKGMLGDVDRFKSYFEAPILNGMLIDSSHHDVKV 207
            +T A+K++RT+RR+ALTGSPLQNNL+EYY MVDFVR+G LG    F++ F+ PI NG   +S+  DVK+
Sbjct:  734 ITQALKQVRTQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSTHEFRNRFQNPIENGQHTNSTSDDVKI 802
[Close]
BLAST of mRNA_S-dermatodea_contig10555.388.1 vs. uniprot
Match: A0A1D6KU35_MAIZE (Chromatin complex subunit A n=2 Tax=Zea mays TaxID=4577 RepID=A0A1D6KU35_MAIZE)

HSP 1 Score: 87.4 bits (215), Expect = 1.830e-18
Identity = 40/69 (57.97%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    1 VTVAIKKLRTKRRVALTGSPLQNNLVEYYTMVDFVRKGMLGDVDRFKSYFEAPILNGMLIDSSHHDVKV 207
            +T A+K++RT+RR+ALTGSPLQNNL+EYY MVDFVR+G LG    F++ F+ PI NG   +S+  DVK+
Sbjct:  899 ITQALKQVRTQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSTHEFRNRFQNPIENGQHTNSTSDDVKI 967
[Close]
BLAST of mRNA_S-dermatodea_contig10555.388.1 vs. uniprot
Match: A0A804LZ18_MAIZE (ATP-dependent helicase ATRX n=1 Tax=Zea mays TaxID=4577 RepID=A0A804LZ18_MAIZE)

HSP 1 Score: 87.4 bits (215), Expect = 1.840e-18
Identity = 40/69 (57.97%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    1 VTVAIKKLRTKRRVALTGSPLQNNLVEYYTMVDFVRKGMLGDVDRFKSYFEAPILNGMLIDSSHHDVKV 207
            +T A+K++RT+RR+ALTGSPLQNNL+EYY MVDFVR+G LG    F++ F+ PI NG   +S+  DVK+
Sbjct:  703 ITQALKQVRTQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSTHEFRNRFQNPIENGQHTNSTSDDVKI 771
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10555.388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRW3_ECTSI8.180e-3083.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KF11_9PHAE2.840e-2982.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0QYE4_9CHLO1.560e-2062.32Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
A0A2I0WIJ2_9ASPA1.120e-1959.42ATP-dependent helicase ATRX n=4 Tax=Dendrobium cat... [more]
A0A811MGK5_9POAL9.870e-1957.97ATP-dependent helicase ATRX n=2 Tax=Miscanthus lut... [more]
A0A1B6QKI5_SORBI9.870e-1957.97ATP-dependent helicase ATRX n=4 Tax=Andropogoneae ... [more]
A0A1D6KU15_MAIZE1.830e-1857.97ATP-dependent helicase ATRX n=5 Tax=Zea mays TaxID... [more]
A0A1D6KU32_MAIZE1.830e-1857.97ATP-dependent helicase ATRX (Fragment) n=1 Tax=Zea... [more]
A0A1D6KU35_MAIZE1.830e-1857.97Chromatin complex subunit A n=2 Tax=Zea mays TaxID... [more]
A0A804LZ18_MAIZE1.840e-1857.97ATP-dependent helicase ATRX n=1 Tax=Zea mays TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10555contigS-dermatodea_contig10555:6740..6955 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.9
Seed ortholog evalue2.4e-25
Seed eggNOG ortholog2880.D8LRW3
KEGG koko:K06767,ko:K10779,ko:K10875,ko:K10876
KEGG Pathwayko03440,map03440
EggNOG free text desc.ATP binding
EggNOG OGsCOG0553@1,KOG1015@2759,KOG1016@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03000,ko03036,ko03400,ko04516
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size216
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924162.9873352-CDS-S-dermatodea_contig10555:6739..69551622924162.9873352-CDS-S-dermatodea_contig10555:6739..6955Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10555 6740..6955 -
1694079060.791493-CDS-S-dermatodea_contig10555:6739..69551694079060.791493-CDS-S-dermatodea_contig10555:6739..6955Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10555 6740..6955 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10555.388.1prot_S-dermatodea_contig10555.388.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10555 6740..6955 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10555.388.1

>prot_S-dermatodea_contig10555.388.1 ID=prot_S-dermatodea_contig10555.388.1|Name=mRNA_S-dermatodea_contig10555.388.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=72bp
VTVAIKKLRTKRRVALTGSPLQNNLVEYYTMVDFVRKGMLGDVDRFKSYF
EAPILNGMLIDSSHHDVKVCV*
back to top

mRNA from alignment at S-dermatodea_contig10555:6740..6955-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10555.388.1 ID=mRNA_S-dermatodea_contig10555.388.1|Name=mRNA_S-dermatodea_contig10555.388.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=216bp|location=Sequence derived from alignment at S-dermatodea_contig10555:6740..6955- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGACCGTGGCCATCAAGAAGCTGCGAACGAAGCGACGCGTGGCGCTCAC
GGGGTCCCCCTTGCAAAACAACCTGGTTGAGTACTACACTATGGTGGACT
TCGTCCGCAAGGGCATGCTCGGGGACGTGGACCGTTTCAAGAGCTACTTC
GAGGCGCCGATCCTCAACGGCATGCTGATCGACAGCTCCCATCACGACGT
GAAGGTGTGTGTGTAA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig10555:6740..6955-

>mRNA_S-dermatodea_contig10555.388.1 ID=mRNA_S-dermatodea_contig10555.388.1|Name=mRNA_S-dermatodea_contig10555.388.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at S-dermatodea_contig10555:6740..6955- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGACCGTGGCCATCAAGAAGCTGCGAACGAAGCGACGCGTGGCGCTCAC
GGGGTCCCCCTTGCAAAACAACCTGGTTGAGTACTACACTATGGTGGACT
TCGTCCGCAAGGGCATGCTCGGGGACGTGGACCGTTTCAAGAGCTACTTC
GAGGCGCCGATCCTCAACGGCATGCTGATCGACAGCTCCCATCACGACGT
GAAGGTGTGTGTGTAAGTGACCGTGGCCATCAAGAAGCTGCGAACGAAGC
GACGCGTGGCGCTCACGGGGTCCCCCTTGCAAAACAACCTGGTTGAGTAC
TACACTATGGTGGACTTCGTCCGCAAGGGCATGCTCGGGGACGTGGACCG
TTTCAAGAGCTACTTCGAGGCGCCGATCCTCAACGGCATGCTGATCGACA
GCTCCCATCACGACGTGAAGGTGTGTGTGTAA
back to top