prot_S-dermatodea_contig10349.255.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig10349.255.1
Unique Nameprot_S-dermatodea_contig10349.255.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length108
Homology
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BLAST of mRNA_S-dermatodea_contig10349.255.1 vs. uniprot
Match: A0A6H5JHX4_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHX4_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 7.550e-30
Identity = 68/126 (53.97%), Postives = 81/126 (64.29%), Query Frame = 0 
Query:    3 AIRPRPGRVAPPPQLVVVPSWGLARWHMELAQACPRLIIKVWEDWKEEERLLG-------------VEHRSSPAPDQSGP-------YPSATRFSSADVVLCSLERLAAVSAGGSAADTRLARSIR 108
            A+RPRPG +APPPQLVVVPSW +ARWHMELAQACPRL+IKVWE+W+ +E                 ++ + SP    +G         P   R SS DVVLCSLERLA V  GG +AD RLARS+R
Sbjct:  640 AMRPRPGSLAPPPQLVVVPSWAMARWHMELAQACPRLVIKVWEEWRSQEHXXXXXXXXXXXXXXXXLQQKLSPQATAAGGSVSGKARLPPTARRSSVDVVLCSLERLAEVD-GGVSADARLARSVR 764
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BLAST of mRNA_S-dermatodea_contig10349.255.1 vs. uniprot
Match: D7FME7_ECTSI (Myb-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME7_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 1.600e-25
Identity = 60/117 (51.28%), Postives = 70/117 (59.83%), Query Frame = 0 
Query:    3 AIRPRPGRVAPPPQLVVVPSWGLARWHMELAQACPRLIIKVWEDWKEEERLLGV-----------------EHRSSPAPDQSGP-------YPSATRFSSADVVLCSLERLAAVSAG 95
            A+RPRPG +APPPQLVVVPSW +ARWHMELAQACPRL+IKVWE+W+ +E                      + + SP    +G         P   R SSADVVLCSLERLA V  G
Sbjct: 1077 AMRPRPGSLAPPPQLVVVPSWAMARWHMELAQACPRLVIKVWEEWRSQEHXXXXXXXXXXXXXXXXXXXXXQQKLSPQATAAGGSVSGKARLPPTARRSSADVVLCSLERLAEVDGG 1193
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10349.255.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHX4_9PHAE7.550e-3053.97SNF2-rel_dom domain-containing protein n=1 Tax=Ect... [more]
D7FME7_ECTSI1.600e-2551.28Myb-like domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10349contigS-dermatodea_contig10349:2622..6012 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10349.255.1mRNA_S-dermatodea_contig10349.255.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig10349 2605..6012 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig10349.255.1 ID=prot_S-dermatodea_contig10349.255.1|Name=mRNA_S-dermatodea_contig10349.255.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=108bp
MRAIRPRPGRVAPPPQLVVVPSWGLARWHMELAQACPRLIIKVWEDWKEE
ERLLGVEHRSSPAPDQSGPYPSATRFSSADVVLCSLERLAAVSAGGSAAD
TRLARSIR
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