mRNA_S-dermatodea_contig10349.255.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10349.255.1
Unique NamemRNA_S-dermatodea_contig10349.255.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10349.255.1 vs. uniprot
Match: A0A6H5JHX4_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHX4_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 1.190e-31
Identity = 71/132 (53.79%), Postives = 84/132 (63.64%), Query Frame = 3 
Query:    6 PGAGMRAIRPRPGRVAPPPQLVVVPSWGLARWHMELAQACPRLIIKVWEDWKEEERLLG-------------VEHRSSPAPDQSGP-------YPSATRFSSADVVLCSLERLAAVSAGGSAADTRLARSIR 341
            PG G  A+RPRPG +APPPQLVVVPSW +ARWHMELAQACPRL+IKVWE+W+ +E                 ++ + SP    +G         P   R SS DVVLCSLERLA V  GG +AD RLARS+R
Sbjct:  634 PGRGALAMRPRPGSLAPPPQLVVVPSWAMARWHMELAQACPRLVIKVWEEWRSQEHXXXXXXXXXXXXXXXXLQQKLSPQATAAGGSVSGKARLPPTARRSSVDVVLCSLERLAEVD-GGVSADARLARSVR 764
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BLAST of mRNA_S-dermatodea_contig10349.255.1 vs. uniprot
Match: D7FME7_ECTSI (Myb-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME7_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 3.030e-26
Identity = 62/123 (50.41%), Postives = 72/123 (58.54%), Query Frame = 3 
Query:    6 PGAGMRAIRPRPGRVAPPPQLVVVPSWGLARWHMELAQACPRLIIKVWEDWKEEERLLGV-----------------EHRSSPAPDQSGP-------YPSATRFSSADVVLCSLERLAAVSAG 302
            P  G  A+RPRPG +APPPQLVVVPSW +ARWHMELAQACPRL+IKVWE+W+ +E                      + + SP    +G         P   R SSADVVLCSLERLA V  G
Sbjct: 1071 PRQGTLAMRPRPGSLAPPPQLVVVPSWAMARWHMELAQACPRLVIKVWEEWRSQEHXXXXXXXXXXXXXXXXXXXXXQQKLSPQATAAGGSVSGKARLPPTARRSSADVVLCSLERLAEVDGG 1193
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10349.255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHX4_9PHAE1.190e-3153.79SNF2-rel_dom domain-containing protein n=1 Tax=Ect... [more]
D7FME7_ECTSI3.030e-2650.41Myb-like domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10349contigS-dermatodea_contig10349:2605..6012 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size341
Cds size324
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10349.255.1prot_S-dermatodea_contig10349.255.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10349 2622..6012 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924152.76282-UTR-S-dermatodea_contig10349:2604..26211622924152.76282-UTR-S-dermatodea_contig10349:2604..2621Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10349 2605..2621 +
1694079053.6721363-UTR-S-dermatodea_contig10349:2604..26211694079053.6721363-UTR-S-dermatodea_contig10349:2604..2621Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10349 2605..2621 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924152.7705748-CDS-S-dermatodea_contig10349:2621..27471622924152.7705748-CDS-S-dermatodea_contig10349:2621..2747Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10349 2622..2747 +
1694079053.6800463-CDS-S-dermatodea_contig10349:2621..27471694079053.6800463-CDS-S-dermatodea_contig10349:2621..2747Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10349 2622..2747 +
1622924152.7777686-CDS-S-dermatodea_contig10349:5814..60121622924152.7777686-CDS-S-dermatodea_contig10349:5814..6012Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10349 5815..6012 +
1694079053.6880164-CDS-S-dermatodea_contig10349:5814..60121694079053.6880164-CDS-S-dermatodea_contig10349:5814..6012Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10349 5815..6012 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10349.255.1

>prot_S-dermatodea_contig10349.255.1 ID=prot_S-dermatodea_contig10349.255.1|Name=mRNA_S-dermatodea_contig10349.255.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=108bp
MRAIRPRPGRVAPPPQLVVVPSWGLARWHMELAQACPRLIIKVWEDWKEE
ERLLGVEHRSSPAPDQSGPYPSATRFSSADVVLCSLERLAAVSAGGSAAD
TRLARSIR
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mRNA from alignment at S-dermatodea_contig10349:2605..6012+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10349.255.1 ID=mRNA_S-dermatodea_contig10349.255.1|Name=mRNA_S-dermatodea_contig10349.255.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3408bp|location=Sequence derived from alignment at S-dermatodea_contig10349:2605..6012+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGTCGCCCGGGGCGGGGATGCGAGCTATCCGTCCCCGGCCCGGGAGGGTT
GCGCCGCCGCCACAGCTTGTCGTAGTACCGTCCTGGGGGTTGGCGAGGTG
GCACATGGAGCTGGCGCAGGCGTGCCCTCGTCTTATAATTAAGGTGCGCC
GCGTTTGGTATGGTGTGGTACAATTTGGCTCAGCAGACTTTTGACACTTC
CAATATATATTAAACCCTTTCGGGACTAAGGCTGTTTTCGGGTAACGAAC
TGTTTTGCTACTGTATTATTATTATATACCACGCTTTTTGTTTTGGGACT
TTAGGCTGTTTTCAGATATAATAACTGTTTTTGCTATTATGGTAGCCAAC
AGAGTTACCCGAAAACAGGCTTCATCCCCAGGCTGAGGAGTCCCAAAAAG
GTAATAAATCATATCATTTTAATAGCAAGCAGTTACCCGAAAACAGCTTC
TTAGTCCCAAACGGGTAAATAATAGTCGACGAATATATTTATTAATTTCC
CGCGTTTTTTTTTTTCCTGGGCAAAGCTGATCAGTCCTTTCGGCCGGAAT
GTGGTCGCGATGCAATGCAATGCAATGATGCAATGCAATGCAATGCAATG
CAATGGCCGCCGACGATTTTTTTTAGGAAATTGGCGCTATCATACAGGCC
TCGGATGAAGATGAACATAAAGGTGAAGGTGCTGAGGGCGGGTATGGGTT
AGGGATCGGGTTTGGGTTAAGCGTTAGGGTTAGGGTTAGGGTTAGGGTTT
GCGTTAGGGTGGGTTGAATCGACACCCGGGGGCCCCGCGCCAGCGCTTTC
AAAACGCAGTTTTATAAAAAAAAATAAGGCTGGGTTATCGTATTTCGGAG
GTACTACAGTATAAAAGTGCGTAGCCACGGCTATTAATACGCCGGTGTGA
GGTGTGCGTTGGCAGGACGATATGCCGACGGAACGCGACACGGAGGTCGA
ACGCGGTCGAGCCACTGTGCTGTGCGTGTCGCTACTGCTGCTGTATTTTC
GCTTTTATGAAGAAAAAATAAATAACGCTCAACACAAACATCAAGTTGTT
TGGCATCAGACAGCATCCTTGTCTAACATCAATATACCCAATTATGTCAT
TGTTGCTTTTTTTAAATAATATACAGTAATCAGGACCAAACCTCAAGACC
GTGAGTACGCAACTGTTCCGGCCATAAACTCCCAGACAGCACCAAAAACG
CATGGACCAAAAAAAACAACACGAGGCCTGGCCTATGTGACAAACATAGA
CCTCTAGTGAATACCCGATCGTATCCGGCCTTTTTTGTTTTGCTAAGTTA
AGTAAAGATTTGTGGCGGATTTGGACCCGATAACTATGGTCCTCCTTAAT
AAGTGTCTTGGACAATTCTGCACTGACTACGAACTGGGAGAGATCCTTGG
GTGAAGGTGCGCCGCGATTGGTATGGTATGGTACAATTTTGTATGGTACA
TTTTGGTATTGGTATGGTACAGTTTGGTATGGTATTGGTATTAGATGGTA
CAGTTTGGTATGGTACGGTCTGGTATGGTACAGTCTGGTATGGTACAGTC
TGGTATGGTACAGTTTGGTATGGTACAGTTGGGTATGGTACAATCTGGTA
TGGTACAATCTGGTATGGTACAGTCTGGTATGGTACAGTTTTGTTTGGTA
CAGTCTGGTATGGTACAGTTTTGTACGGTACAGTTTTGTATGGTACAGTC
TGGTATGGTACAGTCTGGTATGGTACAGTTTTGTATGGTACAGTTTGGTA
TGGTACAGTCTGGTATGGTACAGTCTGGTAGGGTACAGTCCGGCTGGTTA
CTTGTCACGGGTGTGAAGTGGCGGTTGTTTCGCGAGCAAACGCCGATACC
TGATTGTACATTCCAAAGGCGGAAAGAGAGAGATCGCGGTGTGGTGTGAG
TGTACTTTGGGCCGAGAGCGTAATCAGGTACACAGCCTACTTGTATATGT
GTTGTTTTTTCATTCGGTATGTACAATCACTGAGGAACAAAATAACATGA
CAGTGCCGGTCATGCAACCGAACACCGGTTATGCCACTGGTAGTGTCAAA
AAGGCATGCGTAATTGCCGGGCATGTGAAGGGTACTGATTTACAGTGTCC
CTCCGTTATGACTCGTCGGTCCAGGACACGAGGAATCGGGACTTTGCCTG
TAATCAAGCAAATATTGCGCTGTCGTCAGGGACAGGACACGAGTTGCTGG
GACTCTGCCTGATTGATTTTATTTTTTATTTTTTTATTTGCACACGTATA
GCCGATCGGCTTTATCCGACCCGACTTGTTGTCATACACGCAAAGAGCCA
AGGAGAAAAATAACTAATCATAACTCTACTTGTACCATACACCGTACCGT
CCCTGGTACTTACTATGGTACAAGAAATAAGAAATAGCACCTACCCCAGA
TATAGAGAAAACGCTAGAAGAGAACTCAAACTCACACAATGCTCCCTCGC
CTCTCCACGGGTCTTTTCTGCCTGTAATCGATCAAACAAGCAAGCAAGCA
AACAGACAGACATTGTGCTGCCATCAGGGGCAGGATACGGGTTATCGGAC
TTTCCCTGTATTCAAACAAACAAGCGCACAAACATTGCGCTGTCATGAGA
GACAGGACACGGGTTGTCGAGACTCAGCCTGTAATAATCAAACAAGCAAG
CGAACAAACAAAAGATTGTGCTGTCATGAGGGACTGACAGGACACGGGTT
GTCGGGACTCTGCCTGTAATCAATCAAACAAACATTGTGCTGTCATGAGG
GACAGGATACGGGTGGACTTTGCCTTTAAGCAAGCAAACAAACAAGCAGG
CATTGTGCTGCCATGAGGGACAGGACACGGGTTATCGGGACTCTGTCTGT
CATCAGTCAAACAAGCGAACACACATTTGCGCTGTCATGAGAGACAGGAC
GCGGGTTGTCGGGACTCTGCCTGTAGTAAATAAAACAAACAAACCTTGTG
CAGGACCCGGGTTATCGGTATGTTTTGCCTGTGGTGAAACAAATAAACAT
TGTGCTTTCATGAGGGGCAGGACACGGGTTATATCGAGACCTTGCCTGTA
ATCAGACAAACAAACAAACAAACAAACAAACAAACAAGCAAGCAAGCAGA
CATTGTGCTGTCATCAGGAACAGGAAGTCAGGAAGTGGGTTATCGGGACC
TCATCCTGTAATCAACAAAACAAACAAGCAAAACAAACATCGTGCTGTCA
TCACCGGCAGGTGTGGGAGGACTGGAAGGAAGAAGAACGCCTCCTGGGCG
TGGAACACCGATCCTCGCCGGCGCCGGACCAATCCGGCCCTTACCCTTCC
GCCACACGGTTTTCCTCCGCCGATGTTGTGCTTTGCTCGCTGGAGCGCCT
GGCCGCGGTGTCGGCGGGGGGGTCTGCCGCGGATACTCGGCTTGCAAGAT
CGATTCGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10349:2605..6012+

>mRNA_S-dermatodea_contig10349.255.1 ID=mRNA_S-dermatodea_contig10349.255.1|Name=mRNA_S-dermatodea_contig10349.255.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at S-dermatodea_contig10349:2605..6012+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGAGCTATCCGTCCCCGGCCCGGGAGGGTTGCGCCGCCGCCACAGCT
TGTCGTAGTACCGTCCTGGGGGTTGGCGAGGTGGCACATGGAGCTGGCGC
AGGCGTGCCCTCGTCTTATAATTAAGATGCGAGCTATCCGTCCCCGGCCC
GGGAGGGTTGCGCCGCCGCCACAGCTTGTCGTAGTACCGTCCTGGGGGTT
GGCGAGGTGGCACATGGAGCTGGCGCAGGCGTGCCCTCGTCTTATAATTA
AGGTGTGGGAGGACTGGAAGGAAGAAGAACGCCTCCTGGGCGTGGAACAC
CGATCCTCGCCGGCGCCGGACCAATCCGGCCCTTACCCTTCCGCCACACG
GTTTTCCTCCGCCGATGTTGTGCTTTGCTCGCTGGAGCGCCTGGCCGCGG
TGTCGGCGGGGGGGTCTGCCGCGGATACTCGGCTTGCAAGATCGATTCGG
GTGTGGGAGGACTGGAAGGAAGAAGAACGCCTCCTGGGCGTGGAACACCG
ATCCTCGCCGGCGCCGGACCAATCCGGCCCTTACCCTTCCGCCACACGGT
TTTCCTCCGCCGATGTTGTGCTTTGCTCGCTGGAGCGCCTGGCCGCGGTG
TCGGCGGGGGGGTCTGCCGCGGATACTCGGCTTGCAAGATCGATTCGG
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