prot_S-dermatodea_contig10346.253.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig10346.253.1
Unique Nameprot_S-dermatodea_contig10346.253.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length238
Homology
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BLAST of mRNA_S-dermatodea_contig10346.253.1 vs. uniprot
Match: D8LCG9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCG9_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 3.570e-40
Identity = 77/85 (90.59%), Postives = 83/85 (97.65%), Query Frame = 0 
Query:    2 LFKQKPKRDVRVGTIEKDADYKAFCAALQSPAPPLPSADIQADIRESEGKEEPKPQNALLDFLKERGAKKMRDSQRAAALGSSSS 86
            LFKQKPKRDVRVGTIEKDA YKAFCAALQSPA PLPSAD+QADIRESEGKEEPKPQNALLDFL+ERGA+++RDSQRAAALGSS+S
Sbjct:  155 LFKQKPKRDVRVGTIEKDASYKAFCAALQSPAQPLPSADVQADIRESEGKEEPKPQNALLDFLRERGARRVRDSQRAAALGSSAS 239
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BLAST of mRNA_S-dermatodea_contig10346.253.1 vs. uniprot
Match: A0A8K1FA17_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FA17_PYTOL)

HSP 1 Score: 60.1 bits (144), Expect = 6.810e-7
Identity = 30/64 (46.88%), Postives = 43/64 (67.19%), Query Frame = 0 
Query:    4 KQKPKRDVRVGTIEKDADYKAFCAALQSPAPPLPSADIQADIRESEGKEEPKPQNALLDFLKER 67
            ++K ++D ++GTI++D D+ AF   L  P   LPSAD+ AD +ESEG E  KP  AL+ +L ER
Sbjct:  193 REKARKDTKIGTIDRDPDFLAFLEELAKPNEKLPSADVVADAKESEGAE--KPVAALVQYLNER 254
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10346.253.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCG9_ECTSI3.570e-4090.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8K1FA17_PYTOL6.810e-746.88Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005120UPF3 domainPFAMPF03467Smg4_UPF3coord: 5..67
e-value: 7.3E-8
score: 32.6
NoneNo IPR availablePANTHERPTHR13112:SF0FI21285P1coord: 3..225
IPR039722Nonsense-mediated mRNA decay protein 3PANTHERPTHR13112UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEINcoord: 3..225

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10346contigS-dermatodea_contig10346:6955..7668 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10346.253.1mRNA_S-dermatodea_contig10346.253.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig10346 6955..7668 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig10346.253.1 ID=prot_S-dermatodea_contig10346.253.1|Name=mRNA_S-dermatodea_contig10346.253.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=238bp
QLFKQKPKRDVRVGTIEKDADYKAFCAALQSPAPPLPSADIQADIRESEG
KEEPKPQNALLDFLKERGAKKMRDSQRAAALGSSSSSRGSRRGTSSTAST
GTSAASATNASKTASSLAAAKRPKTSTSASASSSSSADAETSRAPTASST
ASKPKDPEKETSKVQSRSGGSSGGGGGGGSSSSSSARAPRGSSSASRPPP
PPPAAQDKKSDSARGTPASAPAPSKSRSGGSGAINGGG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005120UPF3_dom
IPR039722Upf3