mRNA_S-dermatodea_contig10346.253.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10346.253.1
Unique NamemRNA_S-dermatodea_contig10346.253.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10346.253.1 vs. uniprot
Match: D8LCG9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCG9_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 3.570e-40
Identity = 77/85 (90.59%), Postives = 83/85 (97.65%), Query Frame = 1 
Query:    4 LFKQKPKRDVRVGTIEKDADYKAFCAALQSPAPPLPSADIQADIRESEGKEEPKPQNALLDFLKERGAKKMRDSQRAAALGSSSS 258
            LFKQKPKRDVRVGTIEKDA YKAFCAALQSPA PLPSAD+QADIRESEGKEEPKPQNALLDFL+ERGA+++RDSQRAAALGSS+S
Sbjct:  155 LFKQKPKRDVRVGTIEKDASYKAFCAALQSPAQPLPSADVQADIRESEGKEEPKPQNALLDFLRERGARRVRDSQRAAALGSSAS 239
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BLAST of mRNA_S-dermatodea_contig10346.253.1 vs. uniprot
Match: A0A8K1FA17_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FA17_PYTOL)

HSP 1 Score: 60.1 bits (144), Expect = 6.810e-7
Identity = 30/64 (46.88%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:   10 KQKPKRDVRVGTIEKDADYKAFCAALQSPAPPLPSADIQADIRESEGKEEPKPQNALLDFLKER 201
            ++K ++D ++GTI++D D+ AF   L  P   LPSAD+ AD +ESEG E  KP  AL+ +L ER
Sbjct:  193 REKARKDTKIGTIDRDPDFLAFLEELAKPNEKLPSADVVADAKESEGAE--KPVAALVQYLNER 254
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10346.253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCG9_ECTSI3.570e-4090.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8K1FA17_PYTOL6.810e-746.88Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10346contigS-dermatodea_contig10346:6955..7668 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNucleotide-binding alpha-beta plait domain
Ec32 orthologEc-26_005010.1
Exons1
Model size714
Cds size714
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924152.58073-CDS-S-dermatodea_contig10346:6954..76681622924152.58073-CDS-S-dermatodea_contig10346:6954..7668Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10346 6955..7668 -
1694079053.610611-CDS-S-dermatodea_contig10346:6954..76681694079053.610611-CDS-S-dermatodea_contig10346:6954..7668Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10346 6955..7668 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10346.253.1prot_S-dermatodea_contig10346.253.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10346 6955..7668 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10346.253.1

>prot_S-dermatodea_contig10346.253.1 ID=prot_S-dermatodea_contig10346.253.1|Name=mRNA_S-dermatodea_contig10346.253.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=238bp
QLFKQKPKRDVRVGTIEKDADYKAFCAALQSPAPPLPSADIQADIRESEG
KEEPKPQNALLDFLKERGAKKMRDSQRAAALGSSSSSRGSRRGTSSTAST
GTSAASATNASKTASSLAAAKRPKTSTSASASSSSSADAETSRAPTASST
ASKPKDPEKETSKVQSRSGGSSGGGGGGGSSSSSSARAPRGSSSASRPPP
PPPAAQDKKSDSARGTPASAPAPSKSRSGGSGAINGGG
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mRNA from alignment at S-dermatodea_contig10346:6955..7668-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10346.253.1 ID=mRNA_S-dermatodea_contig10346.253.1|Name=mRNA_S-dermatodea_contig10346.253.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=714bp|location=Sequence derived from alignment at S-dermatodea_contig10346:6955..7668- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGCTATTCAAGCAGAAGCCGAAGCGAGACGTGCGCGTGGGCACGATCGA
AAAGGACGCGGACTACAAGGCCTTCTGCGCCGCGTTGCAGTCGCCCGCGC
CGCCCCTGCCGAGCGCGGACATCCAGGCGGACATCCGCGAGTCCGAGGGC
AAAGAGGAGCCGAAGCCGCAAAACGCGCTGCTCGACTTCCTCAAGGAGCG
GGGCGCGAAAAAAATGAGAGACAGCCAGCGCGCCGCGGCTCTCGGCTCCT
CGTCGAGCTCCAGGGGAAGCCGGAGGGGCACGAGCTCGACCGCTTCGACC
GGAACTTCGGCGGCGTCGGCAACGAACGCATCGAAGACGGCCTCCTCGCT
GGCGGCGGCGAAAAGACCAAAAACGTCCACGTCAGCGTCCGCGTCCTCGT
CCTCCTCCGCTGACGCGGAAACCTCGCGAGCGCCGACGGCCTCAAGCACC
GCCTCGAAGCCCAAGGATCCCGAGAAGGAGACATCCAAGGTTCAAAGCCG
CAGTGGTGGCAGCAGCGGCGGCGGCGGCGGCGGCGGCAGCAGCAGCAGCA
GCTCCGCGCGAGCGCCGCGAGGGAGCTCGAGCGCGTCGCGGCCGCCTCCC
CCCCCTCCAGCCGCCCAGGATAAGAAATCCGACTCGGCGCGCGGAACGCC
CGCGTCAGCACCGGCGCCTTCCAAGAGTCGCAGTGGTGGCAGCGGTGCCA
TCAACGGTGGCGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10346:6955..7668-

>mRNA_S-dermatodea_contig10346.253.1 ID=mRNA_S-dermatodea_contig10346.253.1|Name=mRNA_S-dermatodea_contig10346.253.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1428bp|location=Sequence derived from alignment at S-dermatodea_contig10346:6955..7668- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGCTATTCAAGCAGAAGCCGAAGCGAGACGTGCGCGTGGGCACGATCGA
AAAGGACGCGGACTACAAGGCCTTCTGCGCCGCGTTGCAGTCGCCCGCGC
CGCCCCTGCCGAGCGCGGACATCCAGGCGGACATCCGCGAGTCCGAGGGC
AAAGAGGAGCCGAAGCCGCAAAACGCGCTGCTCGACTTCCTCAAGGAGCG
GGGCGCGAAAAAAATGAGAGACAGCCAGCGCGCCGCGGCTCTCGGCTCCT
CGTCGAGCTCCAGGGGAAGCCGGAGGGGCACGAGCTCGACCGCTTCGACC
GGAACTTCGGCGGCGTCGGCAACGAACGCATCGAAGACGGCCTCCTCGCT
GGCGGCGGCGAAAAGACCAAAAACGTCCACGTCAGCGTCCGCGTCCTCGT
CCTCCTCCGCTGACGCGGAAACCTCGCGAGCGCCGACGGCCTCAAGCACC
GCCTCGAAGCCCAAGGATCCCGAGAAGGAGACATCCAAGGTTCAAAGCCG
CAGTGGTGGCAGCAGCGGCGGCGGCGGCGGCGGCGGCAGCAGCAGCAGCA
GCTCCGCGCGAGCGCCGCGAGGGAGCTCGAGCGCGTCGCGGCCGCCTCCC
CCCCCTCCAGCCGCCCAGGATAAGAAATCCGACTCGGCGCGCGGAACGCC
CGCGTCAGCACCGGCGCCTTCCAAGAGTCGCAGTGGTGGCAGCGGTGCCA
TCAACGGTGGCGGCCAGCTATTCAAGCAGAAGCCGAAGCGAGACGTGCGC
GTGGGCACGATCGAAAAGGACGCGGACTACAAGGCCTTCTGCGCCGCGTT
GCAGTCGCCCGCGCCGCCCCTGCCGAGCGCGGACATCCAGGCGGACATCC
GCGAGTCCGAGGGCAAAGAGGAGCCGAAGCCGCAAAACGCGCTGCTCGAC
TTCCTCAAGGAGCGGGGCGCGAAAAAAATGAGAGACAGCCAGCGCGCCGC
GGCTCTCGGCTCCTCGTCGAGCTCCAGGGGAAGCCGGAGGGGCACGAGCT
CGACCGCTTCGACCGGAACTTCGGCGGCGTCGGCAACGAACGCATCGAAG
ACGGCCTCCTCGCTGGCGGCGGCGAAAAGACCAAAAACGTCCACGTCAGC
GTCCGCGTCCTCGTCCTCCTCCGCTGACGCGGAAACCTCGCGAGCGCCGA
CGGCCTCAAGCACCGCCTCGAAGCCCAAGGATCCCGAGAAGGAGACATCC
AAGGTTCAAAGCCGCAGTGGTGGCAGCAGCGGCGGCGGCGGCGGCGGCGG
CAGCAGCAGCAGCAGCTCCGCGCGAGCGCCGCGAGGGAGCTCGAGCGCGT
CGCGGCCGCCTCCCCCCCCTCCAGCCGCCCAGGATAAGAAATCCGACTCG
GCGCGCGGAACGCCCGCGTCAGCACCGGCGCCTTCCAAGAGTCGCAGTGG
TGGCAGCGGTGCCATCAACGGTGGCGGC
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