prot_S-dermatodea_contig10338.248.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig10338.248.1
Unique Nameprot_S-dermatodea_contig10338.248.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length56
Homology
BLAST of mRNA_S-dermatodea_contig10338.248.1 vs. uniprot
Match: D7FY85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY85_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 1.610e-23
Identity = 47/53 (88.68%), Postives = 52/53 (98.11%), Query Frame = 0
Query:    1 GIAALCLSEGPIRVIIVDSIIALFRVDFSGRGDLSVRQQKLGRHLATLLQMAT 53
             IAALCL+EGPIRVIIVDS+IALFRVDFSGRGDLSVRQQKLGRHL++LLQMA+
Sbjct:   15 SIAALCLTEGPIRVIIVDSVIALFRVDFSGRGDLSVRQQKLGRHLSSLLQMAS 67          
BLAST of mRNA_S-dermatodea_contig10338.248.1 vs. uniprot
Match: A0A812XH47_9DINO (LIM15 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812XH47_9DINO)

HSP 1 Score: 67.4 bits (163), Expect = 6.050e-13
Identity = 32/50 (64.00%), Postives = 42/50 (84.00%), Query Frame = 0
Query:    3 AALCLSEGPIRVIIVDSIIALFRVDFSGRGDLSVRQQKLGRHLATLLQMA 52
            A L   E PIR++I+DSIIALFRVDFSGRG+LS RQQK+G+H++ L ++A
Sbjct:    2 AKLAEEESPIRLLIIDSIIALFRVDFSGRGELSERQQKMGKHMSLLKKIA 51          
BLAST of mRNA_S-dermatodea_contig10338.248.1 vs. uniprot
Match: A0A4D9CQI8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQI8_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 9.270e-13
Identity = 33/51 (64.71%), Postives = 43/51 (84.31%), Query Frame = 0
Query:    2 IAALCLSEGPIRVIIVDSIIALFRVDFSGRGDLSVRQQKLGRHLATLLQMA 52
            +AAL    GP R++I+DSIIALFRVD+SGRG+LS RQQKLG+HL+ L ++A
Sbjct:  218 LAALIAEHGPFRMLIIDSIIALFRVDYSGRGELSERQQKLGQHLSALTRLA 268          
BLAST of mRNA_S-dermatodea_contig10338.248.1 vs. uniprot
Match: A0A812T168_SYMMI (DMC1A protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812T168_SYMMI)

HSP 1 Score: 67.8 bits (164), Expect = 1.520e-12
Identity = 31/44 (70.45%), Postives = 41/44 (93.18%), Query Frame = 0
Query:    9 EGPIRVIIVDSIIALFRVDFSGRGDLSVRQQKLGRHLATLLQMA 52
            +GP RV+I+DSIIALFRV+FSGRG+LS RQQKLG+HL+ L+++A
Sbjct:   71 QGPFRVLIIDSIIALFRVEFSGRGELSERQQKLGQHLSHLVRIA 114          
BLAST of mRNA_S-dermatodea_contig10338.248.1 vs. uniprot
Match: A0A0C3QXG1_9AGAM (RECA_2 domain-containing protein n=1 Tax=Tulasnella calospora MUT 4182 TaxID=1051891 RepID=A0A0C3QXG1_9AGAM)

HSP 1 Score: 62.4 bits (150), Expect = 1.140e-11
Identity = 32/46 (69.57%), Postives = 39/46 (84.78%), Query Frame = 0
Query:    7 LSEGPIRVIIVDSIIALFRVDFSGRGDLSVRQQKLGRHLATLLQMA 52
            L+EG  R+IIVDSI+ALFRVD+SGRG+LS RQQKL + LA L +MA
Sbjct:   11 LAEGGYRLIIVDSIMALFRVDYSGRGELSERQQKLAQFLAQLTRMA 56          
BLAST of mRNA_S-dermatodea_contig10338.248.1 vs. uniprot
Match: F0WX51_9STRA (DNA repair and recombination protein radA putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WX51_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.630e-10
Identity = 27/44 (61.36%), Postives = 38/44 (86.36%), Query Frame = 0
Query:    9 EGPIRVIIVDSIIALFRVDFSGRGDLSVRQQKLGRHLATLLQMA 52
            +GP +++IVDS+ ALFRVDFSGRG+LS RQQ+L +HL  L+++A
Sbjct:   44 QGPFKLLIVDSVTALFRVDFSGRGELSERQQRLNQHLIQLIKLA 87          
BLAST of mRNA_S-dermatodea_contig10338.248.1 vs. uniprot
Match: K3XAG2_GLOUD (Rad51 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XAG2_GLOUD)

HSP 1 Score: 59.3 bits (142), Expect = 1.800e-10
Identity = 26/46 (56.52%), Postives = 37/46 (80.43%), Query Frame = 0
Query:    9 EGPIRVIIVDSIIALFRVDFSGRGDLSVRQQKLGRHLATLLQMATV 54
            +GP +++I+DS+ ALFR DFSGRG+LS RQQ+L +HL  L++ A V
Sbjct:   16 QGPFKLLIIDSVTALFRTDFSGRGELSERQQRLNQHLIRLVKHAEV 61          
BLAST of mRNA_S-dermatodea_contig10338.248.1 vs. uniprot
Match: A0A835YPZ9_9STRA (DMC1-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPZ9_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.870e-10
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 0
Query:    1 GIAALCLSEGPIRVIIVDSIIALFRVDFSGRGDLSVRQQKLGRHLATLLQMA 52
             +  L    GPIR++IVDSII LFR DFSGRG+L+ RQQKL +H+ +L  +A
Sbjct:  215 AVGPLATENGPIRLVIVDSIITLFRTDFSGRGELAERQQKLNKHMTSLKNIA 266          
BLAST of mRNA_S-dermatodea_contig10338.248.1 vs. uniprot
Match: M3JBG1_CANMX (Meiotic recombination protein DLH1 n=1 Tax=Candida maltosa (strain Xu316) TaxID=1245528 RepID=M3JBG1_CANMX)

HSP 1 Score: 62.8 bits (151), Expect = 3.730e-10
Identity = 30/46 (65.22%), Postives = 39/46 (84.78%), Query Frame = 0
Query:    7 LSEGPIRVIIVDSIIALFRVDFSGRGDLSVRQQKLGRHLATLLQMA 52
            LSEG  R++IVDSI+A FRVDFSGRG+L+ RQQKL +HL+ L ++A
Sbjct:  196 LSEGTFRLLIVDSIMACFRVDFSGRGELNERQQKLNQHLSNLTRVA 241          
BLAST of mRNA_S-dermatodea_contig10338.248.1 vs. uniprot
Match: D5G270_BROHO (Disrupted meiotic cDNA 1 (Fragment) n=2 Tax=Bromus TaxID=4501 RepID=D5G270_BROHO)

HSP 1 Score: 59.7 bits (143), Expect = 4.380e-10
Identity = 31/52 (59.62%), Postives = 43/52 (82.69%), Query Frame = 0
Query:    1 GIAALCLSEGPIRVIIVDSIIALFRVDFSGRGDLSVRQQKLGRHLATLLQMA 52
            G+AA  ++E P R++IVDS+IALFRVDFSGRG+L+ RQQKL + L+ L ++A
Sbjct:   11 GLAAK-MAEEPFRLLIVDSVIALFRVDFSGRGELAERQQKLAQMLSRLTKIA 61          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10338.248.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY85_ECTSI1.610e-2388.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A812XH47_9DINO6.050e-1364.00LIM15 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A4D9CQI8_9STRA9.270e-1364.71Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A812T168_SYMMI1.520e-1270.45DMC1A protein (Fragment) n=1 Tax=Symbiodinium micr... [more]
A0A0C3QXG1_9AGAM1.140e-1169.57RECA_2 domain-containing protein n=1 Tax=Tulasnell... [more]
F0WX51_9STRA1.630e-1061.36DNA repair and recombination protein radA putative... [more]
K3XAG2_GLOUD1.800e-1056.52Rad51 domain-containing protein n=1 Tax=Globispora... [more]
A0A835YPZ9_9STRA2.870e-1055.77DMC1-like protein n=1 Tax=Tribonema minus TaxID=30... [more]
M3JBG1_CANMX3.730e-1065.22Meiotic recombination protein DLH1 n=1 Tax=Candida... [more]
D5G270_BROHO4.380e-1059.62Disrupted meiotic cDNA 1 (Fragment) n=2 Tax=Bromus... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013632DNA recombination and repair protein Rad51-like, C-terminalPFAMPF08423Rad51coord: 4..52
e-value: 2.2E-14
score: 53.3
NoneNo IPR availableGENE3D3.40.50.300coord: 1..55
e-value: 1.9E-9
score: 39.4
NoneNo IPR availablePANTHERPTHR22942RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBERcoord: 7..52
NoneNo IPR availablePANTHERPTHR22942:SF30MEIOTIC RECOMBINATION PROTEIN DMC1/LIM15 HOMOLOGcoord: 7..52
IPR020588DNA recombination and repair protein RecA-like, ATP-binding domainPROSITEPS50162RECA_2coord: 1..55
score: 13.553
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 7..53

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10338contigS-dermatodea_contig10338:692..859 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10338.248.1mRNA_S-dermatodea_contig10338.248.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig10338 692..859 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig10338.248.1 ID=prot_S-dermatodea_contig10338.248.1|Name=mRNA_S-dermatodea_contig10338.248.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=56bp
GIAALCLSEGPIRVIIVDSIIALFRVDFSGRGDLSVRQQKLGRHLATLLQ
MATVR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013632DNA_recomb/repair_Rad51_C
IPR020588RecA_ATP-bd
IPR027417P-loop_NTPase