mRNA_S-dermatodea_contig10338.248.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10338.248.1
Unique NamemRNA_S-dermatodea_contig10338.248.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10338.248.1 vs. uniprot
Match: D7FY85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY85_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 1.610e-23
Identity = 47/53 (88.68%), Postives = 52/53 (98.11%), Query Frame = 1 
Query:    1 GIAALCLSEGPIRVIIVDSIIALFRVDFSGRGDLSVRQQKLGRHLATLLQMAT 159
             IAALCL+EGPIRVIIVDS+IALFRVDFSGRGDLSVRQQKLGRHL++LLQMA+
Sbjct:   15 SIAALCLTEGPIRVIIVDSVIALFRVDFSGRGDLSVRQQKLGRHLSSLLQMAS 67
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BLAST of mRNA_S-dermatodea_contig10338.248.1 vs. uniprot
Match: A0A812XH47_9DINO (LIM15 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812XH47_9DINO)

HSP 1 Score: 67.4 bits (163), Expect = 6.050e-13
Identity = 32/50 (64.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    7 AALCLSEGPIRVIIVDSIIALFRVDFSGRGDLSVRQQKLGRHLATLLQMA 156
            A L   E PIR++I+DSIIALFRVDFSGRG+LS RQQK+G+H++ L ++A
Sbjct:    2 AKLAEEESPIRLLIIDSIIALFRVDFSGRGELSERQQKMGKHMSLLKKIA 51
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BLAST of mRNA_S-dermatodea_contig10338.248.1 vs. uniprot
Match: A0A4D9CQI8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQI8_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 9.270e-13
Identity = 33/51 (64.71%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:    4 IAALCLSEGPIRVIIVDSIIALFRVDFSGRGDLSVRQQKLGRHLATLLQMA 156
            +AAL    GP R++I+DSIIALFRVD+SGRG+LS RQQKLG+HL+ L ++A
Sbjct:  218 LAALIAEHGPFRMLIIDSIIALFRVDYSGRGELSERQQKLGQHLSALTRLA 268
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BLAST of mRNA_S-dermatodea_contig10338.248.1 vs. uniprot
Match: A0A812T168_SYMMI (DMC1A protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812T168_SYMMI)

HSP 1 Score: 67.8 bits (164), Expect = 1.520e-12
Identity = 31/44 (70.45%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:   25 EGPIRVIIVDSIIALFRVDFSGRGDLSVRQQKLGRHLATLLQMA 156
            +GP RV+I+DSIIALFRV+FSGRG+LS RQQKLG+HL+ L+++A
Sbjct:   71 QGPFRVLIIDSIIALFRVEFSGRGELSERQQKLGQHLSHLVRIA 114
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BLAST of mRNA_S-dermatodea_contig10338.248.1 vs. uniprot
Match: A0A0C3QXG1_9AGAM (RECA_2 domain-containing protein n=1 Tax=Tulasnella calospora MUT 4182 TaxID=1051891 RepID=A0A0C3QXG1_9AGAM)

HSP 1 Score: 62.4 bits (150), Expect = 1.140e-11
Identity = 32/46 (69.57%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:   19 LSEGPIRVIIVDSIIALFRVDFSGRGDLSVRQQKLGRHLATLLQMA 156
            L+EG  R+IIVDSI+ALFRVD+SGRG+LS RQQKL + LA L +MA
Sbjct:   11 LAEGGYRLIIVDSIMALFRVDYSGRGELSERQQKLAQFLAQLTRMA 56
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BLAST of mRNA_S-dermatodea_contig10338.248.1 vs. uniprot
Match: F0WX51_9STRA (DNA repair and recombination protein radA putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WX51_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.630e-10
Identity = 27/44 (61.36%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:   25 EGPIRVIIVDSIIALFRVDFSGRGDLSVRQQKLGRHLATLLQMA 156
            +GP +++IVDS+ ALFRVDFSGRG+LS RQQ+L +HL  L+++A
Sbjct:   44 QGPFKLLIVDSVTALFRVDFSGRGELSERQQRLNQHLIQLIKLA 87
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BLAST of mRNA_S-dermatodea_contig10338.248.1 vs. uniprot
Match: K3XAG2_GLOUD (Rad51 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XAG2_GLOUD)

HSP 1 Score: 59.3 bits (142), Expect = 1.800e-10
Identity = 26/46 (56.52%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:   25 EGPIRVIIVDSIIALFRVDFSGRGDLSVRQQKLGRHLATLLQMATV 162
            +GP +++I+DS+ ALFR DFSGRG+LS RQQ+L +HL  L++ A V
Sbjct:   16 QGPFKLLIIDSVTALFRTDFSGRGELSERQQRLNQHLIRLVKHAEV 61
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BLAST of mRNA_S-dermatodea_contig10338.248.1 vs. uniprot
Match: A0A835YPZ9_9STRA (DMC1-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPZ9_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.870e-10
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 GIAALCLSEGPIRVIIVDSIIALFRVDFSGRGDLSVRQQKLGRHLATLLQMA 156
             +  L    GPIR++IVDSII LFR DFSGRG+L+ RQQKL +H+ +L  +A
Sbjct:  215 AVGPLATENGPIRLVIVDSIITLFRTDFSGRGELAERQQKLNKHMTSLKNIA 266
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BLAST of mRNA_S-dermatodea_contig10338.248.1 vs. uniprot
Match: M3JBG1_CANMX (Meiotic recombination protein DLH1 n=1 Tax=Candida maltosa (strain Xu316) TaxID=1245528 RepID=M3JBG1_CANMX)

HSP 1 Score: 62.8 bits (151), Expect = 3.730e-10
Identity = 30/46 (65.22%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:   19 LSEGPIRVIIVDSIIALFRVDFSGRGDLSVRQQKLGRHLATLLQMA 156
            LSEG  R++IVDSI+A FRVDFSGRG+L+ RQQKL +HL+ L ++A
Sbjct:  196 LSEGTFRLLIVDSIMACFRVDFSGRGELNERQQKLNQHLSNLTRVA 241
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BLAST of mRNA_S-dermatodea_contig10338.248.1 vs. uniprot
Match: D5G270_BROHO (Disrupted meiotic cDNA 1 (Fragment) n=2 Tax=Bromus TaxID=4501 RepID=D5G270_BROHO)

HSP 1 Score: 59.7 bits (143), Expect = 4.380e-10
Identity = 31/52 (59.62%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    1 GIAALCLSEGPIRVIIVDSIIALFRVDFSGRGDLSVRQQKLGRHLATLLQMA 156
            G+AA  ++E P R++IVDS+IALFRVDFSGRG+L+ RQQKL + L+ L ++A
Sbjct:   11 GLAAK-MAEEPFRLLIVDSVIALFRVDFSGRGELAERQQKLAQMLSRLTKIA 61
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10338.248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY85_ECTSI1.610e-2388.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A812XH47_9DINO6.050e-1364.00LIM15 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A4D9CQI8_9STRA9.270e-1364.71Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A812T168_SYMMI1.520e-1270.45DMC1A protein (Fragment) n=1 Tax=Symbiodinium micr... [more]
A0A0C3QXG1_9AGAM1.140e-1169.57RECA_2 domain-containing protein n=1 Tax=Tulasnell... [more]
F0WX51_9STRA1.630e-1061.36DNA repair and recombination protein radA putative... [more]
K3XAG2_GLOUD1.800e-1056.52Rad51 domain-containing protein n=1 Tax=Globispora... [more]
A0A835YPZ9_9STRA2.870e-1055.77DMC1-like protein n=1 Tax=Tribonema minus TaxID=30... [more]
M3JBG1_CANMX3.730e-1065.22Meiotic recombination protein DLH1 n=1 Tax=Candida... [more]
D5G270_BROHO4.380e-1059.62Disrupted meiotic cDNA 1 (Fragment) n=2 Tax=Bromus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10338contigS-dermatodea_contig10338:692..859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.4
Seed ortholog evalue1.9e-17
Seed eggNOG ortholog2880.D7FY85
Preferred nameDMC1
KEGG koko:K10872,ko:K14545,ko:K17804,ko:K19347
KEGG TC3.A.8.1
KEGG Pathwayko03008,ko04113,map03008,map04113
GOsGO:0000003,GO:0000018,GO:0000150,GO:0000166,GO:0000217,GO:0000228,GO:0000280,GO:0000400,GO:0000709,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000730,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000795,GO:0000800,GO:0001541,GO:0001556,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006268,GO:0006281,GO:0006282,GO:0006302,GO:0006310,GO:0006311,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007129,GO:0007130,GO:0007131,GO:0007140,GO:0007141,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007292,GO:0007548,GO:0008022,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0008406,GO:0008585,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009719,GO:0009893,GO:0009987,GO:0009994,GO:0010033,GO:0010212,GO:0010243,GO:0010520,GO:0010564,GO:0010569,GO:0010604,GO:0010833,GO:0010948,GO:0014070,GO:0016043,GO:0016462,GO:0016604,GO:0016605,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0019899,GO:0019953,GO:0021700,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030154,GO:0030554,GO:0031297,GO:0031323,GO:0031325,GO:0031974,GO:0031981,GO:0032200,GO:0032392,GO:0032501,GO:0032502,GO:0032504,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033043,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0035639,GO:0035690,GO:0035822,GO:0035825,GO:0035861,GO:0036094,GO:0036297,GO:0040020,GO:0042148,GO:0042221,GO:0042493,GO:0042592,GO:0042623,GO:0042802,GO:0043142,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043279,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044703,GO:0044877,GO:0045003,GO:0045005,GO:0045132,GO:0045137,GO:0045143,GO:0045786,GO:0045935,GO:0046483,GO:0046545,GO:0046660,GO:0048232,GO:0048285,GO:0048468,GO:0048469,GO:0048471,GO:0048477,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048599,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051026,GO:0051052,GO:0051054,GO:0051105,GO:0051106,GO:0051128,GO:0051171,GO:0051173,GO:0051259,GO:0051260,GO:0051276,GO:0051321,GO:0051445,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0060249,GO:0060255,GO:0060631,GO:0061458,GO:0061982,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070182,GO:0070192,GO:0070193,GO:0070316,GO:0070317,GO:0070887,GO:0071103,GO:0071214,GO:0071310,GO:0071312,GO:0071407,GO:0071417,GO:0071478,GO:0071479,GO:0071495,GO:0071695,GO:0071704,GO:0071824,GO:0071840,GO:0072757,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090734,GO:0090735,GO:0097159,GO:0097305,GO:0097306,GO:0097327,GO:0097367,GO:0098687,GO:0098813,GO:0099086,GO:0104004,GO:0140013,GO:0140097,GO:1901265,GO:1901360,GO:1901363,GO:1901563,GO:1901576,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1903046,GO:1905334,GO:2000241,GO:2000779,GO:2001020
EggNOG free text desc.strand invasion
EggNOG OGsCOG0468@1,KOG1434@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko03009,ko03029,ko03036,ko03400
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924152.4192839-CDS-S-dermatodea_contig10338:691..8591622924152.4192839-CDS-S-dermatodea_contig10338:691..859Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10338 692..859 -
1694079053.5106423-CDS-S-dermatodea_contig10338:691..8591694079053.5106423-CDS-S-dermatodea_contig10338:691..859Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10338 692..859 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10338.248.1prot_S-dermatodea_contig10338.248.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10338 692..859 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10338.248.1

>prot_S-dermatodea_contig10338.248.1 ID=prot_S-dermatodea_contig10338.248.1|Name=mRNA_S-dermatodea_contig10338.248.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=56bp
GIAALCLSEGPIRVIIVDSIIALFRVDFSGRGDLSVRQQKLGRHLATLLQ
MATVR*
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mRNA from alignment at S-dermatodea_contig10338:692..859-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10338.248.1 ID=mRNA_S-dermatodea_contig10338.248.1|Name=mRNA_S-dermatodea_contig10338.248.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=168bp|location=Sequence derived from alignment at S-dermatodea_contig10338:692..859- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTATCGCAGCTCTTTGCCTCAGCGAAGGCCCTATCCGCGTGATCATCGT
AGACTCCATCATTGCTCTCTTCCGGGTAGATTTTAGCGGACGCGGAGACC
TGTCCGTGCGACAGCAAAAGCTTGGGAGACATCTCGCCACCTTGCTACAG
ATGGCAACGGTGAGATGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10338:692..859-

>mRNA_S-dermatodea_contig10338.248.1 ID=mRNA_S-dermatodea_contig10338.248.1|Name=mRNA_S-dermatodea_contig10338.248.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at S-dermatodea_contig10338:692..859- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTATCGCAGCTCTTTGCCTCAGCGAAGGCCCTATCCGCGTGATCATCGT
AGACTCCATCATTGCTCTCTTCCGGGTAGATTTTAGCGGACGCGGAGACC
TGTCCGTGCGACAGCAAAAGCTTGGGAGACATCTCGCCACCTTGCTACAG
ATGGCAACGGTGAGATGAGGTATCGCAGCTCTTTGCCTCAGCGAAGGCCC
TATCCGCGTGATCATCGTAGACTCCATCATTGCTCTCTTCCGGGTAGATT
TTAGCGGACGCGGAGACCTGTCCGTGCGACAGCAAAAGCTTGGGAGACAT
CTCGCCACCTTGCTACAGATGGCAACGGTGAGATGA
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