prot_S-dermatodea_contig10313.235.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig10313.235.1
Unique Nameprot_S-dermatodea_contig10313.235.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length162
Homology
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BLAST of mRNA_S-dermatodea_contig10313.235.1 vs. uniprot
Match: A0A6H5JE26_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE26_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 1.610e-55
Identity = 100/162 (61.73%), Postives = 124/162 (76.54%), Query Frame = 0 
Query:    1 QSVRRDLLLEFRASPGFCRATEYFTHTSAEEILQEGIMFFRNEEFASASEMFERALCHARCIGDGQVEARALGNLATADYKTNCIPSAIRRYRTCLQLLRQQGNQVSERKILNYLVMCCIEATRWETAKLFLSQLSTVAVSEDNIRSLERLDTRIAEGMAGQ 162
            +  R+ L+ +FR + GF RAT   T +S +E+L EGI +FR +++  A   FE+ L +ARCIG+G++EARALGNLAT DYKT+ IP+AIRRYRTC+QLLRQQGNQV+ERKILNYLVMCCIEA RW  AKLF  QLS +A SE+N+  L RL  RI EGMA Q
Sbjct:  386 EDARQQLVDDFRRNDGFRRATAGLTQSSVQEVLDEGISYFRCQDYGPAGVRFEKVLRNARCIGEGRMEARALGNLATVDYKTHRIPAAIRRYRTCVQLLRQQGNQVTERKILNYLVMCCIEAQRWAPAKLFHEQLSKLAESEENVLHLARLQERIEEGMALQ 547
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BLAST of mRNA_S-dermatodea_contig10313.235.1 vs. uniprot
Match: D8LBM4_ECTSI (TPR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBM4_ECTSI)

HSP 1 Score: 196 bits (498), Expect = 3.490e-55
Identity = 101/162 (62.35%), Postives = 122/162 (75.31%), Query Frame = 0 
Query:    1 QSVRRDLLLEFRASPGFCRATEYFTHTSAEEILQEGIMFFRNEEFASASEMFERALCHARCIGDGQVEARALGNLATADYKTNCIPSAIRRYRTCLQLLRQQGNQVSERKILNYLVMCCIEATRWETAKLFLSQLSTVAVSEDNIRSLERLDTRIAEGMAGQ 162
            +  RR L+ +FR + GF RAT   T +S +EIL EGI +FR +++  A   FE+ L  ARCIG+G++EARALGNLAT DYKT+ IP+AIRRYRTC+QLLRQQGNQ +ERKILNYLVMCCIEA RW  AKLF  QLS +A SE N++ L RL  RI EGMA Q
Sbjct:  384 EDARRQLVDDFRRNDGFQRATAGLTQSSVQEILDEGISYFRCQDYGPAGVRFEKVLRDARCIGEGRMEARALGNLATVDYKTHRIPAAIRRYRTCVQLLRQQGNQATERKILNYLVMCCIEAQRWAPAKLFHEQLSKLAESEQNVQLLGRLQERIEEGMALQ 545
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10313.235.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JE26_9PHAE1.610e-5561.73SH2 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LBM4_ECTSI3.490e-5562.35TPR domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 19..157
e-value: 1.2E-12
score: 49.6
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 28..156

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10313contigS-dermatodea_contig10313:421..2914 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10313.235.1mRNA_S-dermatodea_contig10313.235.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig10313 421..2914 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig10313.235.1 ID=prot_S-dermatodea_contig10313.235.1|Name=mRNA_S-dermatodea_contig10313.235.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=162bp
QSVRRDLLLEFRASPGFCRATEYFTHTSAEEILQEGIMFFRNEEFASASE
MFERALCHARCIGDGQVEARALGNLATADYKTNCIPSAIRRYRTCLQLLR
QQGNQVSERKILNYLVMCCIEATRWETAKLFLSQLSTVAVSEDNIRSLER
LDTRIAEGMAGQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf