mRNA_S-dermatodea_contig10313.235.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10313.235.1
Unique NamemRNA_S-dermatodea_contig10313.235.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10313.235.1 vs. uniprot
Match: A0A6H5JE26_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE26_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 1.610e-55
Identity = 100/162 (61.73%), Postives = 124/162 (76.54%), Query Frame = 1 
Query:    1 QSVRRDLLLEFRASPGFCRATEYFTHTSAEEILQEGIMFFRNEEFASASEMFERALCHARCIGDGQVEARALGNLATADYKTNCIPSAIRRYRTCLQLLRQQGNQVSERKILNYLVMCCIEATRWETAKLFLSQLSTVAVSEDNIRSLERLDTRIAEGMAGQ 486
            +  R+ L+ +FR + GF RAT   T +S +E+L EGI +FR +++  A   FE+ L +ARCIG+G++EARALGNLAT DYKT+ IP+AIRRYRTC+QLLRQQGNQV+ERKILNYLVMCCIEA RW  AKLF  QLS +A SE+N+  L RL  RI EGMA Q
Sbjct:  386 EDARQQLVDDFRRNDGFRRATAGLTQSSVQEVLDEGISYFRCQDYGPAGVRFEKVLRNARCIGEGRMEARALGNLATVDYKTHRIPAAIRRYRTCVQLLRQQGNQVTERKILNYLVMCCIEAQRWAPAKLFHEQLSKLAESEENVLHLARLQERIEEGMALQ 547
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BLAST of mRNA_S-dermatodea_contig10313.235.1 vs. uniprot
Match: D8LBM4_ECTSI (TPR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBM4_ECTSI)

HSP 1 Score: 196 bits (498), Expect = 3.490e-55
Identity = 101/162 (62.35%), Postives = 122/162 (75.31%), Query Frame = 1 
Query:    1 QSVRRDLLLEFRASPGFCRATEYFTHTSAEEILQEGIMFFRNEEFASASEMFERALCHARCIGDGQVEARALGNLATADYKTNCIPSAIRRYRTCLQLLRQQGNQVSERKILNYLVMCCIEATRWETAKLFLSQLSTVAVSEDNIRSLERLDTRIAEGMAGQ 486
            +  RR L+ +FR + GF RAT   T +S +EIL EGI +FR +++  A   FE+ L  ARCIG+G++EARALGNLAT DYKT+ IP+AIRRYRTC+QLLRQQGNQ +ERKILNYLVMCCIEA RW  AKLF  QLS +A SE N++ L RL  RI EGMA Q
Sbjct:  384 EDARRQLVDDFRRNDGFQRATAGLTQSSVQEILDEGISYFRCQDYGPAGVRFEKVLRDARCIGEGRMEARALGNLATVDYKTHRIPAAIRRYRTCVQLLRQQGNQATERKILNYLVMCCIEAQRWAPAKLFHEQLSKLAESEQNVQLLGRLQERIEEGMALQ 545
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10313.235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JE26_9PHAE1.610e-5561.73SH2 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LBM4_ECTSI3.490e-5562.35TPR domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10313contigS-dermatodea_contig10313:421..2914 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score197.2
Seed ortholog evalue5.9e-48
Seed eggNOG ortholog2880.D8LBM4
EggNOG free text desc.Src homology 2 domains
EggNOG OGs2E8DT@1,2SEWF@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSH2 and tetratricopeptide-like domain protein
Ec32 orthologEc-27_003420.1
Exons4
Model size486
Cds size486
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10313.235.1prot_S-dermatodea_contig10313.235.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10313 421..2914 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924151.295366-CDS-S-dermatodea_contig10313:420..5251622924151.295366-CDS-S-dermatodea_contig10313:420..525Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10313 421..525 +
1694079052.6524491-CDS-S-dermatodea_contig10313:420..5251694079052.6524491-CDS-S-dermatodea_contig10313:420..525Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10313 421..525 +
1622924151.3069985-CDS-S-dermatodea_contig10313:1138..12641622924151.3069985-CDS-S-dermatodea_contig10313:1138..1264Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10313 1139..1264 +
1694079052.6640644-CDS-S-dermatodea_contig10313:1138..12641694079052.6640644-CDS-S-dermatodea_contig10313:1138..1264Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10313 1139..1264 +
1622924151.3178344-CDS-S-dermatodea_contig10313:2133..22731622924151.3178344-CDS-S-dermatodea_contig10313:2133..2273Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10313 2134..2273 +
1694079052.6736314-CDS-S-dermatodea_contig10313:2133..22731694079052.6736314-CDS-S-dermatodea_contig10313:2133..2273Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10313 2134..2273 +
1622924151.326639-CDS-S-dermatodea_contig10313:2799..29141622924151.326639-CDS-S-dermatodea_contig10313:2799..2914Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10313 2800..2914 +
1694079052.6828985-CDS-S-dermatodea_contig10313:2799..29141694079052.6828985-CDS-S-dermatodea_contig10313:2799..2914Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10313 2800..2914 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10313.235.1

>prot_S-dermatodea_contig10313.235.1 ID=prot_S-dermatodea_contig10313.235.1|Name=mRNA_S-dermatodea_contig10313.235.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=162bp
QSVRRDLLLEFRASPGFCRATEYFTHTSAEEILQEGIMFFRNEEFASASE
MFERALCHARCIGDGQVEARALGNLATADYKTNCIPSAIRRYRTCLQLLR
QQGNQVSERKILNYLVMCCIEATRWETAKLFLSQLSTVAVSEDNIRSLER
LDTRIAEGMAGQ
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mRNA from alignment at S-dermatodea_contig10313:421..2914+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10313.235.1 ID=mRNA_S-dermatodea_contig10313.235.1|Name=mRNA_S-dermatodea_contig10313.235.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2494bp|location=Sequence derived from alignment at S-dermatodea_contig10313:421..2914+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGTCCGTGCGACGGGACCTGTTGCTGGAATTTCGGGCGTCACCAGGATT
CTGCAGGGCGACGGAATACTTCACGCACACGAGCGCGGAAGAAATTCTCC
AGGAAGTGAGATGGTGGCAGGGTTTTCCGAGCTTCGCGCACGCTGTTGGT
TATTTTTGTTGTTGTTGTTTTTTTTTTTTTTTTCCTTCTTTCTTTTTCCT
CGGTGGGCACGGAGTGATTCGAAGAGAGAGTGCAGCAGGTCAACCTCATT
CGCCGGACGCTTGTCACTCGCTCCTTCTCCGGGGTGCCGAGCACAGGAAA
GTAGTGTCTCAGCTCACGATGGGACTACTGTTGTGTATGGCAAGGATGGC
TCATACGGTCTGAAGTGATCAGTATCGATTCCGCGAGCTAGGATCGGTGC
TCTACTAAAAAAAAAGACGCAAAAGAAAACGCCCTACAGAGCCGCCGGCC
GCGTGGCGCAGTTGGCGACGGCGCGATGGTTTCGCTGTTTCTTCGCGGCT
TTTACAAAGTTCTTCAATCTTTGTCGCGGTTGCCGATGACCTCCTGCACA
GGCTACGCGGCTTGTGAACAAGCATCCTCAAATGAATATGTGTCTGTGAT
GCTTGCAAAGCTTTGGCTTTCACCCCCTGTTTTCTCACACATACACACAC
ACACACACACACACACGCGCCGTGGCGACGCCATTTGGTTGTGGAAACTC
CCTCGCGCTGACCCCCAGGGCATCATGTTCTTCCGGAACGAAGAGTTCGC
CAGCGCGAGCGAGATGTTCGAGAGGGCGCTGTGTCACGCAAGGTGCATCG
GGGATGGGCAGGTGGAGGCAAGAGCCCTCGGAAACTTGGCAACTGTGAGT
TCGCTGGAGGGCGCTGCTGCGCGAGGGAGGGAGAGAGAGAGCCAGCCCAG
TCTTTCGCCGCGCTGAAAAAAAGACACCCTCGGATGCGTGACGAGCTTCG
CAGTTTTAGCTTTGATGAACAATGCCGCGAATTTTTTCGAAAGTGTGTGT
GTGCTCTCGAGGTGCTGTAGGCTAAATGCTTGTGAATTCGTCGATGAAGG
CCGATCGTGTCTTTTTTGCTCTTGTACAACGTGTTCGTACGCTGTGCCGA
GTTATCGGTTGTGTACCACCGAGTCCCATCCGGTCGATCCGTGAAATAAT
TGCCGCACGAAACGCGCGCCGAATGAGCCACGCCCTGTCGCAACGCAGCA
CGGTGTTCGAAGCGTGTTGTGCCGTCCGCTATAAATAGTCTCGCTGCGCA
GGCGCCCCCTCCCCCCCCTCCCCCGCGGATGGATGACCCAGCCATTGTTC
CTCTCCCAGAAACACAAAAAGGCCTCAAAATTGATTGAATTATGACACAC
TTACAGTACTTACCGACCGGCCCACCAAAAGGTCGCCGATCCGGATCCCG
CTCGTGGTGAGATGACATAAAAAGCGAGAAATCGAAGGCCAACGGAACTC
TGTTGCAATAACATTTTCTCTGTTTGTATCATCATACAACGCGCCTTTAC
GGGCCGACTGCGCAGCGACACCCGCTTTGGACTTTTGCGCCTGCTCTTGC
CGCCTTCCCCCCCTCCCCCTTCCCCTCCCCCTCCCCCTCCCCCTCCCCCC
CCCCCCTGGAATCGTTCCATCCTGGCACGAAACATCGACGCGGCTAAACG
TTGTTTTTTTGTTGCTGTGCCGTTTGGGTTTCCTCTTGGCGAAAACAATT
ACCGAACGGGCAGGCGGACTACAAGACAAACTGCATTCCGTCGGCGATCC
GACGGTATCGCACCTGCTTGCAGCTGCTGAGACAGCAGGGGAACCAGGTG
TCGGAGCGAAAGATTCTCAACTACCTCGTCATGTGTTGCATCGAGGCGAC
CCGGTAATTAGTGAACGCTGATGCTTCGGGCGGGAGGGGGGGGGGCGTGA
TGCTTCGCCGCGCAGCGACATGTCTCGAGCGTGTGGTTCGCTTGCGGTGT
AGGAGATAGCCATTAATAGTTGCGCGCACCGGGCTATTCGCTTGCTTCGT
GCTGCTTGCACTTGTGACCGGGTGTCGTTTGTGGACGTCGTGTTTGAGGG
CCGTTTTTGTGGCCCTGTGGGGCACGCGTCTCTTTTCGGCACGCAGCAGA
GCGCTATTTCGTGTAGCCTTGCCTGAATAGTGCCACCTCTCATCCCGGGG
GCTACTCGCAGCTTTGCCGCGGCGGGCGTCCGAGCCCGTTGGTATCCCAG
CGACGGACCGACCGATCTATGTATTCATCTACCTCATCTATCCGTAGGCA
CGTCTTTTGCGGAAATAAATGAAGGTTTTCGGGGTCGAGCATGAGTGACC
TCAACAGCGTATCGTGGGATGGTTCGGCTCGTTGATCTTTGCCGCTCTTC
CGTTATTTGTTTTTTCCCGCCGGCGGCAGGTGGGAGACGGCGAAGCTGTT
CCTCAGCCAGCTCTCGACAGTGGCGGTAAGCGAGGACAACATAAGATCTC
TCGAAAGGCTGGATACGCGCATAGCGGAAGGCATGGCCGGCCAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10313:421..2914+

>mRNA_S-dermatodea_contig10313.235.1 ID=mRNA_S-dermatodea_contig10313.235.1|Name=mRNA_S-dermatodea_contig10313.235.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at S-dermatodea_contig10313:421..2914+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGTCCGTGCGACGGGACCTGTTGCTGGAATTTCGGGCGTCACCAGGATT
CTGCAGGGCGACGGAATACTTCACGCACACGAGCGCGGAAGAAATTCTCC
AGGAACAGTCCGTGCGACGGGACCTGTTGCTGGAATTTCGGGCGTCACCA
GGATTCTGCAGGGCGACGGAATACTTCACGCACACGAGCGCGGAAGAAAT
TCTCCAGGAAGGCATCATGTTCTTCCGGAACGAAGAGTTCGCCAGCGCGA
GCGAGATGTTCGAGAGGGCGCTGTGTCACGCAAGGTGCATCGGGGATGGG
CAGGTGGAGGCAAGAGCCCTCGGAAACTTGGCAACTGGCATCATGTTCTT
CCGGAACGAAGAGTTCGCCAGCGCGAGCGAGATGTTCGAGAGGGCGCTGT
GTCACGCAAGGTGCATCGGGGATGGGCAGGTGGAGGCAAGAGCCCTCGGA
AACTTGGCAACTGCGGACTACAAGACAAACTGCATTCCGTCGGCGATCCG
ACGGTATCGCACCTGCTTGCAGCTGCTGAGACAGCAGGGGAACCAGGTGT
CGGAGCGAAAGATTCTCAACTACCTCGTCATGTGTTGCATCGAGGCGACC
CGGCGGACTACAAGACAAACTGCATTCCGTCGGCGATCCGACGGTATCGC
ACCTGCTTGCAGCTGCTGAGACAGCAGGGGAACCAGGTGTCGGAGCGAAA
GATTCTCAACTACCTCGTCATGTGTTGCATCGAGGCGACCCGGTGGGAGA
CGGCGAAGCTGTTCCTCAGCCAGCTCTCGACAGTGGCGGTAAGCGAGGAC
AACATAAGATCTCTCGAAAGGCTGGATACGCGCATAGCGGAAGGCATGGC
CGGCCAGGTGGGAGACGGCGAAGCTGTTCCTCAGCCAGCTCTCGACAGTG
GCGGTAAGCGAGGACAACATAAGATCTCTCGAAAGGCTGGATACGCGCAT
AGCGGAAGGCATGGCCGGCCAG
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