prot_S-dermatodea_contig1030.228.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig1030.228.1
Unique Nameprot_S-dermatodea_contig1030.228.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length460
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig1030.228.1 vs. uniprot
Match: D7G833_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G833_ECTSI)

HSP 1 Score: 260 bits (664), Expect = 1.280e-77
Identity = 212/510 (41.57%), Postives = 270/510 (52.94%), Query Frame = 0 
Query:    8 RKKRKRTQRANAAFT---GSRVKAESPRVS--LPIFATLFALAMMGAGCARTLVKASSKKSAEE-RDARAQD--LNAPWAVLFREQHEICPQAALFAHPVGRCLLAS-SADN-TLERLGPFTCLADARFFLRTLGVARSQSSFLLVDVGS----------PPARGMNL--------PETMELEARIRAGEDELPGEVRLVLVDPHED-LSVQGWSTLLLSLVQVMAAGGAIIIRG-RQAMGLDTNADEGPG-GLHDGSSGGSVDLRKAVDALACSDSGVAAAVGNFDGGIVVVRHAAADERPEER-GCRAGEGEGGEEG---------AAAQQPQLFEKLVLWATGEMG-----TVETVQANFGGADAVRNYARQRSGRAACLGKLINRDP------SEVTIDL-SQGDRPGRLRGK---VDHSATPDDTSA----RASRVCLENHLRQYPRDVRAAFALAMAFQSARGKGVDSKVARLRDKVCAESGEAGASLWRALHARAALDAATGL 457
            R+KRKRT RA A+F    G+  K E  R +  LP  A +F L M    C R   K  +++ A + R  RA+D   + P A+L   QH+I  QAA FA P G CL  S  AD  T ERLG FTCLAD  FFLR L  +      ++VDVGS          PP  G  L        PE  +L+A++ AGED LP    L+L+D H++ LS   W  L  SL++ ++  G I+IRG R+ +   T A    G G    +  GS  L  AV ALAC     AAAVGN DGGI+V+RHAA  E   E    R G    G++G         AA   P  FE+L LW+T          +E VQA FGGA+ VR YAR+R  R+ CL  L           SE +++  S G   G LR +   + H + P   +A     A+R CLE HL ++P+DVRA FAL M  ++  G GVD +V RLR ++  ESG AG  LWRALHARAA  AATGL
Sbjct:   10 RRKRKRTARATASFRLNYGTAGKNEGTRCARCLPWIAGMFGLTMAVVVCVRNGFKDLAREKARDARLGRAEDHAKSHPLALLLEGQHDIGSQAARFADPDGHCLYPSPGADQPTAERLGVFTCLADTPFFLRALAESLRFRFLVVVDVGSVSLRHGLPASPPGLGAALTGLESEMFPEAPQLQAQVTAGEDPLPDNADLILIDVHKEVLSADDWVDLFRSLMRALSDDGVIVIRGPREQVDATTGAGRNEGAGSTIRAWYGSGHLWDAVTALACDQVAAAAAVGNLDGGIIVLRHAAPGEIDLETVKARCGRNHPGQQGGGVAKGAVAAAPPHPLRFERLFLWSTAPSDITTATAIEAVQAMFGGANEVRKYARRRYDRSVCLNTLNTVATGEAVAWSEASLETESMGG--GHLRAEPRHIRHKSVPQSGAAPQWHSAARACLETHLEEHPQDVRAGFALEMVLRATGGSGVDRQVDRLRTRMTEESGPAGGLLWRALHARAAGVAATGL 517
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1030.228.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G833_ECTSI1.280e-7741.57Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 53..459
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 33..44
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..32
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..52
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 45..52

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1030contigS-dermatodea_contig1030:12921..17101 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1030.228.1mRNA_S-dermatodea_contig1030.228.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig1030 10393..17371 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig1030.228.1 ID=prot_S-dermatodea_contig1030.228.1|Name=mRNA_S-dermatodea_contig1030.228.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=460bp
MGASPQHRKKRKRTQRANAAFTGSRVKAESPRVSLPIFATLFALAMMGAG
CARTLVKASSKKSAEERDARAQDLNAPWAVLFREQHEICPQAALFAHPVG
RCLLASSADNTLERLGPFTCLADARFFLRTLGVARSQSSFLLVDVGSPPA
RGMNLPETMELEARIRAGEDELPGEVRLVLVDPHEDLSVQGWSTLLLSLV
QVMAAGGAIIIRGRQAMGLDTNADEGPGGLHDGSSGGSVDLRKAVDALAC
SDSGVAAAVGNFDGGIVVVRHAAADERPEERGCRAGEGEGGEEGAAAQQP
QLFEKLVLWATGEMGTVETVQANFGGADAVRNYARQRSGRAACLGKLINR
DPSEVTIDLSQGDRPGRLRGKVDHSATPDDTSARASRVCLENHLRQYPRD
VRAAFALAMAFQSARGKGVDSKVARLRDKVCAESGEAGASLWRALHARAA
LDAATGLFP*
back to top