prot_S-dermatodea_contig103.223.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig103.223.1
Unique Nameprot_S-dermatodea_contig103.223.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length162
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig103.223.1 vs. uniprot
Match: A0A6H5KHR8_9PHAE (Sep15_SelM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KHR8_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 1.080e-52
Identity = 90/153 (58.82%), Postives = 112/153 (73.20%), Query Frame = 0 
Query:    8 LSFLTASLAVGDPSAPDAPGTAVDEQHGPEACEVLGFTAALSCSTCESIKDILADEGLTEECLRCCQETKRSTKKYASARLVYDPRVLGADAELRGFVEDRAGNYPSLTLQATMYAKTVLLMSEEGDGASAAETVSIRRWKVDSIAGYLNEHL 160
            L+ L  SL +     P + G    EQH    C  LGFT+ +SCSTC+  ++I+ADE LT+ECL+CCQE K S+KKYASA+LVYDPR L AD ELRGFV DRA ++P+L L+ T+YAKTVLLMSEEG  A   + ++I+RWKVDSIA YLNEHL
Sbjct:    7 LTTLLVSLVLSFAEVPRSDGEL--EQH---QCNELGFTS-VSCSTCKRFEEIVADESLTDECLQCCQEAKSSSKKYASAKLVYDPRWLSADPELRGFVNDRATDHPALELEPTLYAKTVLLMSEEGADADDVDVINIKRWKVDSIADYLNEHL 153
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig103.223.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KHR8_9PHAE1.080e-5258.82Sep15_SelM domain-containing protein n=2 Tax=Ectoc... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038219Selenoprotein F/M superfamilyGENE3D3.40.30.50coord: 86..160
e-value: 6.2E-6
score: 28.5
IPR039992Selenoprotein F/MPANTHERPTHR13077FAMILY NOT NAMEDcoord: 31..160
NoneNo IPR availablePANTHERPTHR13077:SF6SELENOPROTEIN Fcoord: 31..160
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..161
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..13
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..16
score: 0.871
IPR036249Thioredoxin-like superfamilySUPERFAMILY52833Thioredoxin-likecoord: 72..160

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig103contigS-dermatodea_contig103:15196..19971 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig103.223.1mRNA_S-dermatodea_contig103.223.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig103 15166..20837 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig103.223.1 ID=prot_S-dermatodea_contig103.223.1|Name=mRNA_S-dermatodea_contig103.223.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=162bp
MKAWIVLLSFLTASLAVGDPSAPDAPGTAVDEQHGPEACEVLGFTAALSC
STCESIKDILADEGLTEECLRCCQETKRSTKKYASARLVYDPRVLGADAE
LRGFVEDRAGNYPSLTLQATMYAKTVLLMSEEGDGASAAETVSIRRWKVD
SIAGYLNEHLH*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038219Sep15/SelM_sf
IPR039992Sep15_SelM
IPR036249Thioredoxin-like_sf