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Homology
BLAST of mRNA_S-dermatodea_contig103.223.1 vs. uniprot
Match: A0A6H5KHR8_9PHAE (Sep15_SelM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KHR8_9PHAE) HSP 1 Score: 174 bits (441), Expect = 3.940e-49 Identity = 90/153 (58.82%), Postives = 112/153 (73.20%), Query Frame = 1
Query: 52 LSFLTASLAVGDPSAPDAPGTAVDEQHGPEACEVLGFTAALSCSTCESIKDILADEGLTEECLRCCQETKRSTKKYASARLVYDPRVLGADAELRGFVEDRAGNYPSLTLQATMYAKTVLLMSEEGDGASAAETVSIRRWKVDSIAGYLNEHL 510
L+ L SL + P + G EQH C LGFT+ +SCSTC+ ++I+ADE LT+ECL+CCQE K S+KKYASA+LVYDPR L AD ELRGFV DRA ++P+L L+ T+YAKTVLLMSEEG A + ++I+RWKVDSIA YLNEHL
Sbjct: 7 LTTLLVSLVLSFAEVPRSDGEL--EQH---QCNELGFTS-VSCSTCKRFEEIVADESLTDECLQCCQEAKSSSKKYASAKLVYDPRWLSADPELRGFVNDRATDHPALELEPTLYAKTVLLMSEEGADADDVDVINIKRWKVDSIADYLNEHL 153
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 171.0 |
| Seed ortholog evalue | 4.5e-40 |
| Seed eggNOG ortholog | 2880.D8LI87 |
| Preferred name | SELENOF |
| KEGG ko | ko:K05313 |
| KEGG TC | 1.A.10.1.14,1.A.10.1.15,1.A.10.1.16,1.A.10.1.17 |
| GOs | GO:0000003,GO:0000902,GO:0001101,GO:0003006,GO:0003674,GO:0003824,GO:0004601,GO:0004672,GO:0004674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005788,GO:0005975,GO:0006323,GO:0006325,GO:0006457,GO:0006458,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006884,GO:0006996,GO:0006997,GO:0007154,GO:0007165,GO:0007166,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007289,GO:0008150,GO:0008152,GO:0008361,GO:0008379,GO:0008430,GO:0009311,GO:0009636,GO:0009653,GO:0009719,GO:0009725,GO:0009751,GO:0009826,GO:0009987,GO:0009992,GO:0010033,GO:0012505,GO:0014070,GO:0015036,GO:0016043,GO:0016049,GO:0016209,GO:0016301,GO:0016310,GO:0016491,GO:0016667,GO:0016684,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0019725,GO:0019953,GO:0022412,GO:0022414,GO:0023052,GO:0030104,GO:0030154,GO:0031974,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032989,GO:0035092,GO:0036211,GO:0040007,GO:0042221,GO:0042493,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045454,GO:0046677,GO:0048232,GO:0048468,GO:0048515,GO:0048589,GO:0048609,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050896,GO:0051084,GO:0051276,GO:0051704,GO:0051716,GO:0051920,GO:0055082,GO:0055114,GO:0060560,GO:0065007,GO:0065008,GO:0070013,GO:0070887,GO:0071103,GO:0071704,GO:0071840,GO:0090066,GO:0097237,GO:0098754,GO:0098869,GO:0140096,GO:1901564,GO:1901700,GO:1990748 |
| EggNOG free text desc. | selenium binding |
| EggNOG OGs | KOG3384@1,KOG3384@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko04040 |
| Hectar predicted targeting category | signal peptide |
| Ec32 ortholog description | Thioredoxin-like fold |
| Ec32 ortholog | Ec-14_003600.1 |
| Exons | 5 |
| Model size | 1382 |
| Cds size | 486 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig103.223.1 >prot_S-dermatodea_contig103.223.1 ID=prot_S-dermatodea_contig103.223.1|Name=mRNA_S-dermatodea_contig103.223.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=162bp
MKAWIVLLSFLTASLAVGDPSAPDAPGTAVDEQHGPEACEVLGFTAALSC STCESIKDILADEGLTEECLRCCQETKRSTKKYASARLVYDPRVLGADAE LRGFVEDRAGNYPSLTLQATMYAKTVLLMSEEGDGASAAETVSIRRWKVD SIAGYLNEHLH* back to topmRNA from alignment at S-dermatodea_contig103:15166..20837+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig103.223.1 ID=mRNA_S-dermatodea_contig103.223.1|Name=mRNA_S-dermatodea_contig103.223.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5672bp|location=Sequence derived from alignment at S-dermatodea_contig103:15166..20837+ (Saccorhiza dermatodea SderLu1190fm monoicous) GCCAACACGAGTCCCTCGCACGTCTCAAGAATGAAGGCATGGATCGTCCT
GCTGAGCTTTCTCACAGCTTCCCTTGCGGTGGGTGATCCTTCTGCACCTG
ACGCTCCCGGAACGGCTGTTGATGAGCAGCATGGTCCCGAAGCGTGCGAG
GTCCTTGGGTTCACCGCTGCTTTGAGTTGCTCCACATGCGAGAGCATCAA
GGATATACTGGCAGACGAAGGTCAGTAATTGCTCCAGACTGCAATCGTCT
GCCTTTAGGAGCGCCACGCGCGTGCAGGAGCAGTGTGTGTGTACCTTGTC
TCTGTTGTTGGTGGATCTCTTCGTGAGATTGGGACATATGGGTTTATTCT
GTAGCTCAGCATTCATCGCATACATGGCAGATCGTGGACTGCAACCTGTT
TTGTTCCTCGGTATATTATCATACTGTACTTGTATTTGTTGGCAGCCATG
GCGACGCCCTTGAGTTGTGTCGGTAGGGCACGCTGACTGTACGGACAGCG
GTAGGCAGGCGTGACCCCCCCCCCCCCTACCAAAAGCTGGGGCCTCACCG
CTGCGTTGCTGCTTATCATCGCGTGTTGCAAGATATTGAGATTCCCCTGA
ACACGCCTCTAGTAAATGCAACACGTCTACATTATCGAAATGGTTGTCCA
ACATTGATTACAGGCCTGACGGAGGAGTGTCTGCGGTGCTGCCAAGAGAC
CAAACGCTCCACTAAGAAGGTGAGTGTTTCGCCATGTAGAATGAGCCCGC
ACAGGCTCGACGATTGAGTACTGCCAGCGGTGATGCAAGCACAATTTCCT
GGGGAGCAAGCGGAACTTCCGTCGAGTAAACTGGGGCAGATGGTTGTGGA
ATCACTCCGACACACGAGACCACGAGACGACACTTCACTCAAGTGCACAC
TTGTAGTTATTGGGGTTTGCCCTAAGGGCCGCCGTTCCAAACGGGCAAAA
AAAAACGTTTAATTCGATGAGTATCGTCTATTGTGGAATAATATTTTTCT
CACCCATTCTCGACACGAAATTTCTCGCATTTTAGACGTCGCGAACCGGA
GCCGACGTCAAAAATGTTGAAAGGCATGTTCAAAATGGGGGAGTTTTTTT
ACCTCACGCCCACACCCACACCCAACACACGCCTGCCACTATTAGAGCAC
GCGCCGAAGCGCGCCACCACGACAGCACTGCGCACGGACTGGACCATTGG
TGGCCGGGTGGCTTCGCGCGTGGATTAGTGGTGTGGGCCACTTGCAAAAA
ACCCGGTCCGCAGTGCATCATCTTCTACGAGTTTTCTTGGCAGGCTCTCT
CAGCTGCCCCGCTCTTATGATGGGTTGGATTATCGTTTTCTCGGAGACAA
GCCCATCTTAATAAGCGCCAAGCGGCGACGCGAGGAGGCGAAGAGTAGCG
GAGAGAGTCAACCTGTGCATGCTTGTGACTGCCAGCGGGGTGGCAGTGGG
GTGGCGCAACGGCTGGTAGTCTCGAGCGAGGACGAGGAAGGCGGAAAACG
TTACTACTACAGTTGTCGTGGTCATAATGTAGTGCGCCCTTGATGGATTC
CAGCTTGTCGCTCTAGCACGATGATGGCAGCAGCAGCGTCGTGTAAAAAC
ATCGTGGCAGCGGCGAACGATGCCAGCCCGTGCGGCAAACCGGTGGGCTA
CCGCCACCGTGCTGATACTGTCTTCCTTGTGACGATGCCAACCCACCGGC
ACCATCTTCAGGCATCTACAAGTACCGGATGGAACGCGAAACATGAACAC
CGAAAAGCAAGCCAGTGCACCTCCTCTGTGACCCTGTGATTTGCCGCTTC
CTTCTAAAGTCGTATACCTGGTATGTTTGTAGGCATTTATTTATTTTTAA
CTTTCGTCAAAGTGCGTTTGGAATGGACCGGGAAATACGTGTAATAACGT
CGAAAAAAAGTATGCAGCCTCAACATTGTTCGACACAAATAAACGTGTTC
GTGTGCCCGTTGGGAACGGCCCTAAGCCTATCATATTCTACGTTGTTTTT
TCTTCCTCTCGCGCATGGACGGCCGGGTTTCTTTGTATTAATAGTGTATA
TATGTTGCGATTCGGCCCTTGGATCGCCCGCAACATCAGCGCCACACGTG
GATGCTGTTACAAGAGTGTAAAGGCTTTGCCAAGTGTCGAGGGCGCAGAA
GGTATAATACCTTGTACGAAAAACCCTCCGCAGCGATTGCATGACTAAGC
ATGACGGTTCATGCGAAGGCAAGAGCCCATGTGCACGCAACACCGCCGTT
GAAGTGTCGCTCTCAATCGCCTATGCCACCTTTAAACGCAATCCATCATC
GTCCCGCGCTTGATTTGATCGATTGATTTCCACGTTGGTATATAGCCGAT
CGGCTAACATGCACAAAATCTACTAAGTACGTCGTACAAACAATATGCCC
CATGCACTTCGTCCGGCTTGCGGGCGCAAGGCGGCACCCCCGACCGACCC
CAAGATTGCCGCGGCAGGTTATAATATTGTGCCCACTTCCGCACCCCTTC
GCTGAGCCCCTGCTCCGTCTAAAAGCCCCGCGTTTCATCGTGTTCCCTCT
ACATACTGCTGTGCACCTGCCAGTATGCATCGGCTAGGCTGGTGTACGAC
CCGCGAGTACTGGGCGCTGATGCTGAGCTGCGAGGCTTTGTGGAGGACAG
AGCTGGAAATTACCCAAGCTTGACTTTGCAGGTGCACGATAAAACTGAAG
TCGCGTTTTTCCCTGTCTCTGCGCGAGTCCGTTTTTGTTCAATGGCATGT
CTTGTTGCGTCTTGTTGCGTCTTGTTGCGTCTTGTTGCGCGTGAACTTGC
GGTGACCTGCACATCATTATTTGGTGATGGTTTGTCTGCTGCCGTGCCGC
GTACGCCGACAGTTGTTGTAGGCTGCGCAGGCTGCACAGTTGCTGTAGTG
TATTGCAAATTATGCGATTTACGAGGATGGTGTTCAAAGACCGTTTGGTC
TTAGCTTTTGCGTACAGATCCCGAAAAATGAAGGTAGCATTTTGTTTTTG
CTCGGAAGCAAAGGGGAAACATTATGGAGAAGATGACGTGAATCGACAGG
GGGCCTCAACGTGCCAATTCTCGATCCAATCATTCGACGCAATCTCATCC
TGTAAGTTGACGACCCGAAATTGCCATGTACTTCTCGCCTACGTCATATC
GTGCCAACCAAAATACCATACTCGCGACCATACAGTTGGCTGCTTACTTT
GCTGCTCTTATATCATACCTGGTACCGTGCAGGAGACGCTGCCAAGTCAA
ACATCTTGATTAATTAATTGCTCTTTGAACGTTTTTTAACAGCGATTTCG
TTAACGATTTTGAAACCGGTTTTTGTACACTCAACTCCTATACGATTTTG
AGTGATGCCAAACAACTTGATTTTTTGTGTTGAGCGACCACGCACACCTC
AAAATAGTAGAATGAATTCACCTAACGGGCGTCGCCGTGGCTACCTGCTA
GTACGTACTATTAATACAGTATGATAACAAGAGTCTCAGGTATGGCCTCA
CCATCTACAAACGCTCCAACCCTCGAGCGATACTTCCAATACTAACGGCA
TTGATACCGTGTGTAGAACACCCGCCTGTGACACACCAACTGCTGTCCTG
GGGTGCTGTTAAAAACACCCTGGAAAAGAAAACGTTTCCCCCTGGCCGTT
TGGGGTCTTCTATCATAATCGTAATACAAAAACAAGGTCCATATAAAGCC
CCTAACTGAGTACAAGGTAACCATTATAGCAGTTTCATGTCCAACACATA
TGTATGTTTGTGTATTTCCGTGTTCAGCTCTTTGCCACAGGAACCCTTAC
AACACCAACTATTTCATTGCACGTCCTCGTCGGGGAGTACAATCTGTGAC
TTTTTATGAATACAACGTGTATAGCGCGAGTAGACAGAACAAATGTGTTT
TTGTTCAAGCCGAACGTTTGCAGTGCCCAGGATACACTACATCGCGCGCA
AAGCGATATTCTCTGAACTAGGGCAACCCGCCTCTTGCTTCAGAATATAT
CCCTCCGCTAGGTGGTTGCACTTGGCACGTTTGGTTAACGTTATCACGGG
GTCTCCCGACGAAGCCGCTTACAAGTGATGTCGGCTTCCATGCATGTATA
ATAGTATCCAGCACCGGCTTGCCGCCATCTACTCTCGGTAGTGCCGACAT
TTGAAGGACACACTAGAGCTCTTAATAATATCACCACCCCCACCCAACAA
TATTTGTATCATAGCACGAAGCTGACCTTACGCCCAATCGACACTACTGT
GACGTCGCACAGGCAACCATGTACGCCAAGACCGTGTTGCTCATGTCTGA
GGAGGGGGACGGCGCTTCAGCCGCGGAGACTGTAAGGTGGGCCATCATTG
CAGGAAGCCAACGCGTGTTCCCTCGCGCGGCGCTCGGAAGCTCAATTTTT
GCCTTATCGTTTGCGAGCGATCGCAGCGTATTCTGTGGGAAAGCATAGCG
GTTGTTCCTGCCTCGCCGTGACCCAAGTGGGCGCTCTGGGATGTTGGTAA
TATCGTTCCGCCAAACGGCTGAAGGAGGCGCAGTTTGTGTCGGTAGTTCA
TCCCTCCGACACTCCAGTAGTTACAGCAATACCATACAGTATTAAGGTTG
CCTTGCTTGGCATTTCCGTGCGCGCTACGTATCATATTTGGTTAACAAGT
CATTCCGCAGAACGTCTCCCTCTGAATTTATGCGCTCGCTCCCCCGTGCT
GTTTTGTTCCGGTCTCTCGTTCCTGCCCATACCGTGCGGGACCGACAGCA
TTCGGCGGTGGAAGGTGGACTCCATAGCTGGCTACCTAAACGAGCATTTG
CACTAAAATACCCTGGGTGTCGGCAAGTTGTAAAAACAGCGGGGAGGAGA
GGGTTATCCTACAAGTATATGCGTGGAATTTTGAGGGATTTGTTTAGCGG
CCGACGGGGTATTTCGCCAGTACAGTCATGACGAGAGGTTTGGAGACCGA
CGTGTATGCGCGGTATGTGTGCATATCGTGTAGGGTTTAATCAGCAATCG
TGGGGCTGAATATATTTTCTCGGGGCGTGTGGGGTCGGCGCATCCCGGAC
CCTAACCGGTGGTGTGGATGCTGGACATTGTATTGCCTGGCGAGCGCGAG
ATCGAAACATACTGTAGGCTTTGAACGTAAGGTGAAACGTCGGACGCATT
CGCTATAGGCAACACCGACGTATGGATGGAAAGGGGTGTAACAGAAGAGG
CAATGGCGTTGTAGTACATGCGCTCTTGGCGACGCCCGAACTTCTCGGCA
TGCGATTGCTAACATACATGCAACAGTAGTACTATTACCATGAAAGCACA
CAAATATACACATGATAACTTACAACTTGGGGATATTGTCGCGCGATGTA
TCACCTATCTTATCTCTAGTTTTTTTTACCTTTGACCCCCTCTCCTCGCA
CCTACACCTTGCTGAGAGAGCATACTTGTAGGACGTGCCCACTTTCGGTG
TTTTCCTAGATCTTTGGTACAATGCTGTTTGGGCTCAGGCAGTTGCGGAT
TCTGGTATTTCGGAAAATATGTAGCCCCACTACAAGTACTACTGCAGCTT
AAACGGAGACTGTTGTCTGCACATATAAGTATATTTATCACTTAATAGCG
CTTTACACGTTTGTTTAGAATTTAGAGTGGCGAAAGCCTTGATGCAAAAT
TTTGAGGCCGGTATAATAAAAG back to topCoding sequence (CDS) from alignment at S-dermatodea_contig103:15166..20837+ >mRNA_S-dermatodea_contig103.223.1 ID=mRNA_S-dermatodea_contig103.223.1|Name=mRNA_S-dermatodea_contig103.223.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at S-dermatodea_contig103:15166..20837+ (Saccorhiza dermatodea SderLu1190fm monoicous) ATGAAGGCATGGATCGTCCTGCTGAGCTTTCTCACAGCTTCCCTTGCGGT GGGTGATCCTTCTGCACCTGACGCTCCCGGAACGGCTGTTGATGAGCAGC ATGGTCCCGAAGCGTGCGAGGTCCTTGGGTTCACCGCTGCTTTGAGTTGC TCCACATGCGAGAGCATCAAGGATATACTGGCAGACGAAGATGAAGGCAT GGATCGTCCTGCTGAGCTTTCTCACAGCTTCCCTTGCGGTGGGTGATCCT TCTGCACCTGACGCTCCCGGAACGGCTGTTGATGAGCAGCATGGTCCCGA AGCGTGCGAGGTCCTTGGGTTCACCGCTGCTTTGAGTTGCTCCACATGCG AGAGCATCAAGGATATACTGGCAGACGAAGGCCTGACGGAGGAGTGTCTG CGGTGCTGCCAAGAGACCAAACGCTCCACTAAGAAGGCCTGACGGAGGAG TGTCTGCGGTGCTGCCAAGAGACCAAACGCTCCACTAAGAAGTATGCATC GGCTAGGCTGGTGTACGACCCGCGAGTACTGGGCGCTGATGCTGAGCTGC GAGGCTTTGTGGAGGACAGAGCTGGAAATTACCCAAGCTTGACTTTGCAG TATGCATCGGCTAGGCTGGTGTACGACCCGCGAGTACTGGGCGCTGATGC TGAGCTGCGAGGCTTTGTGGAGGACAGAGCTGGAAATTACCCAAGCTTGA CTTTGCAGGCAACCATGTACGCCAAGACCGTGTTGCTCATGTCTGAGGAG GGGGACGGCGCTTCAGCCGCGGAGACTGTAAGGCAACCATGTACGCCAAG ACCGTGTTGCTCATGTCTGAGGAGGGGGACGGCGCTTCAGCCGCGGAGAC TGTAAGCATTCGGCGGTGGAAGGTGGACTCCATAGCTGGCTACCTAAACG AGCATTTGCACTAACATTCGGCGGTGGAAGGTGGACTCCATAGCTGGCTA CCTAAACGAGCATTTGCACTAA back to top
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