prot_S-dermatodea_contig10247.179.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig10247.179.1
Unique Nameprot_S-dermatodea_contig10247.179.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length53
Homology
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BLAST of mRNA_S-dermatodea_contig10247.179.1 vs. uniprot
Match: D7FPY1_ECTSI (FACT complex subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPY1_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 3.170e-19
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = 0 
Query:    1 MGDATLNTERFLSRLKRLHAQWTKASSLPMWGGASALCLMSGVQNEEDAYKKS 53
            M D+ LN+ERFL RLKRLH QW KA+SLPMWGGASALC+MSG QNE+D YKKS
Sbjct:    1 MADS-LNSERFLVRLKRLHTQWNKAASLPMWGGASALCIMSGAQNEDDTYKKS 52
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10247.179.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPY1_ECTSI3.170e-1977.36FACT complex subunit n=2 Tax=Ectocarpus TaxID=2879... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029149Creatinase/Aminopeptidase P/Spt16, N-terminalGENE3D3.40.350.10coord: 1..53
e-value: 6.0E-9
score: 37.7
IPR029148FACT complex subunit Spt16, N-terminal lobe domainPFAMPF14826FACT-Spt16_Nlobcoord: 6..53
e-value: 3.4E-8
score: 33.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10247contigS-dermatodea_contig10247:616..4639 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10247.179.1mRNA_S-dermatodea_contig10247.179.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig10247 470..4639 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig10247.179.1 ID=prot_S-dermatodea_contig10247.179.1|Name=mRNA_S-dermatodea_contig10247.179.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=53bp
MGDATLNTERFLSRLKRLHAQWTKASSLPMWGGASALCLMSGVQNEEDAY
KKS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029149Creatin/AminoP/Spt16_NTD
IPR029148FACT-Spt16_Nlobe