mRNA_S-dermatodea_contig10247.179.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10247.179.1
Unique NamemRNA_S-dermatodea_contig10247.179.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10247.179.1 vs. uniprot
Match: D7FPY1_ECTSI (FACT complex subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPY1_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 2.320e-18
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = 3 
Query:  147 MGDATLNTERFLSRLKRLHAQWTKASSLPMWGGASALCLMSGVQNEEDAYKKS 305
            M D+ LN+ERFL RLKRLH QW KA+SLPMWGGASALC+MSG QNE+D YKKS
Sbjct:    1 MADS-LNSERFLVRLKRLHTQWNKAASLPMWGGASALCIMSGAQNEDDTYKKS 52
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10247.179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPY1_ECTSI2.320e-1877.36FACT complex subunit n=2 Tax=Ectocarpus TaxID=2879... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10247contigS-dermatodea_contig10247:470..4639 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue9.6e-16
Seed eggNOG ortholog2880.D7FPY1
Preferred nameSPT16
KEGG koko:K20093
GOsGO:0000003,GO:0000228,GO:0000785,GO:0000790,GO:0000791,GO:0001672,GO:0003006,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005719,GO:0005730,GO:0006139,GO:0006325,GO:0006333,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008023,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009791,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010228,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022414,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031491,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0033043,GO:0033044,GO:0034243,GO:0034641,GO:0034645,GO:0034654,GO:0034724,GO:0034728,GO:0035101,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044877,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0060255,GO:0061458,GO:0065007,GO:0070013,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902275,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.Fact complex subunit
EggNOG OGsCOG5406@1,KOG1189@2759
EC3.6.4.12
COG Functional cat.BKL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size306
Cds size159
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10247.179.1prot_S-dermatodea_contig10247.179.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10247 616..4639 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924147.3721688-UTR-S-dermatodea_contig10247:469..6151622924147.3721688-UTR-S-dermatodea_contig10247:469..615Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10247 470..615 +
1694079050.0001776-UTR-S-dermatodea_contig10247:469..6151694079050.0001776-UTR-S-dermatodea_contig10247:469..615Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10247 470..615 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924147.384082-CDS-S-dermatodea_contig10247:615..6881622924147.384082-CDS-S-dermatodea_contig10247:615..688Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10247 616..688 +
1694079050.0131366-CDS-S-dermatodea_contig10247:615..6881694079050.0131366-CDS-S-dermatodea_contig10247:615..688Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10247 616..688 +
1622924147.3936567-CDS-S-dermatodea_contig10247:4553..46391622924147.3936567-CDS-S-dermatodea_contig10247:4553..4639Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10247 4554..4639 +
1694079050.0225961-CDS-S-dermatodea_contig10247:4553..46391694079050.0225961-CDS-S-dermatodea_contig10247:4553..4639Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10247 4554..4639 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10247.179.1

>prot_S-dermatodea_contig10247.179.1 ID=prot_S-dermatodea_contig10247.179.1|Name=mRNA_S-dermatodea_contig10247.179.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=53bp
MGDATLNTERFLSRLKRLHAQWTKASSLPMWGGASALCLMSGVQNEEDAY
KKS
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mRNA from alignment at S-dermatodea_contig10247:470..4639+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10247.179.1 ID=mRNA_S-dermatodea_contig10247.179.1|Name=mRNA_S-dermatodea_contig10247.179.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4170bp|location=Sequence derived from alignment at S-dermatodea_contig10247:470..4639+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTCGAGGGCAGAGATACAGCTGAGAGAGCGTTTGCTTCACGTGCCTGACG
CAGGCGAGCGGTGTAAGTGCCAAACGAGAAGGCTTGCCTACTCACCCCCA
CCCCCCCCCATCATCGAACCCGGATAAGGCGAGGAAATAACAGGAGATGG
GGGACGCCACTCTCAATACTGAGCGCTTTCTCTCGCGCCTAAAGCGACTT
CACGCGCAATGGACCAAAGGTGAGGAGAAAGGGGTGTTGGCGCGGTGGTG
GTGGTGTGTGTGCGCGCGGAGGTCTACAGAGTATGCATGGATCCGCCTTC
CATTGGCTGGGTGTAGAGATGCATGTGTCTATTATATATAAATAGACCAC
TGCTCTTCCTGTGCTCGCGCGAATTCGAGTAGGTGAAGAAGAAGAAACAA
CATGTTTGGTTTTGTTGATTTGAAACTCGACGAGTATAAGAGAGAGCGTA
AAATGCTCTCCTAATTTGCTGCAGAGCCCCTCCCCGATTCAAACCCAGAG
GCTCCTGAGGGCCTGAGGGTGTCGGATTGGCGAGCGGGGGTGGTCGCGTG
GGTGGGTTGGTCGGTGGGTGGGTGGGTGGGTGGCATCTAAATAGAGTTAA
AACCGAGTTGTGAAGAGCGTACGCCCTGCTCTTCTCCACTCCGCACGCGC
AGCCGGTGCTTGCTGCTTCGTTTGTTTGTCTCTGCTGTGTGCGCTGCTGC
TGTTGTTTTGTTGGTTCTCTCGGCCCGCTCTTTTGCGCGAGAGCGTTCCA
ATGTTCCATGTGTGTCGCGCGTCGAGCAAAACTTCCTGTTGAAGCAGTCC
GTCCGTCAGTCAGCATAATAGTGTCAGCTTTGCACATCTATTGCCTTTGT
TAATGAATTACCCTACGCCTGCCGTGGGTCGCCACACAGTATCCTCCACA
AACCCAACCCGCATATCGTCCTGCCAACGCACATCTCACGAGCGTATTAT
AGCCGTGACTATTAATATAATACTGTACCCACTATGATACTGCTGTATTT
AGTCCTACCTCTGTCCGCGCTTTCCTATACTCGTACTATTTTTCAGGTTG
AGGCCGAATTTTTCAGGGATTTTTTAGGCCGATTTCGTCATACTAAACTC
ATACAAGTACAGTATACGATTCACGATTCCTTCATCATGAGGCGATCGCT
CACCTCACCGGCGACCCGTGGCTACAACTGTAGTACCTACTATTTTATAG
TTTAATTATTAATCATTACAGAGTACTGCTCTATACAAAGGGCCGTACCA
TACATATTCCCCGTATCCGCTAGGACCGGGTGAGGACCGGGGTCTCTGCG
GCGAAAAATTAACAAATTATCGAATGATCAGACACCAAATCGTGGGTTTC
CAATTATATTCTAGGTGCTATACCTACACGGGATCCGGTCCCATATTCAC
AACAGACAGTACAGTATTAATTGAGCCGACCACAGCAGCAGCAGCACAAG
AGTGCAGCGAGTTGGACAGGAAGAGCGCGTCAACAACACAACGCAGCAGC
CGAACAACAGACACACCACAGCAGCGGCAACGGCGTGTAGTTGCTCAAAC
TAACCTTATACTCCGGAGTATGTCCCTTCTGCAAACTCATTATGGTCAGT
TAGTCACCTGGTCAGACCCGCACGTTGTGTGGTCTATTTTCACGTATAAT
ACAACAGCAGCGAAGTATAAACACTACTGTAGTTTCAACTGCACACTTAC
AGTCCCCCCTAAGGCTTGCACATAGGCCTTACTGAGAGAGTAAAGGACGT
GTTATACCTACACTCGGTTTCCCCTGGAGTGTGCCCGTGAGTTAGGGATG
TACAGGTGAACTAGTAATAATAGATTGTGTTTTTTATAAAAATAATAAAA
ATTACACCAACAATAAAAGAGGAGAGCAAGAAAAGCAGCAAGAACGCAGC
ATTTATTTGCACCCGAACGACAAGACAGTCACAGCAGTACAGCAGCAGCA
GCAACAACCCAACCTTGCATGCCTCTATATTACTGCAACCTCTTATGACC
GTTCAGCTGGCCAGACCCCGCGTGGCGTTCTGTTTTCGACAGCAAGTCTG
CAACCTTTTGTTCTTGCAGACAGACAGACCATGGTGTCACGCAACAGTCG
TCGGCTGCTGGCTGTGTTCAGACCCGCATTGCGTGCTTCTGTTTTCTTTG
ACAACGGCAACCCTAGACCTTGTGCCTTCTGCAAAGCCTCTTCTGGCCGC
TCCGGTTGGCAGACCCACGTGGCGTGCTGCTGCTGTCAACAGCAACCCCA
ACTTAGATGTTCCTGAGATGGCAATTGTCTGTCCCGTCTGCAACCTCTTT
TTCTCACAATATCCAGTCAGCTTTGTTCAGACCTCAGACCGCATTCCGTG
CATATATATATATATATATATTTTTTTAAGAAAAACACGAAAAACCATGC
TACAGCATCCGATTATATAATGTGTATCTGTTGACCATATGTACTGCCCG
AGGCACGGATTGCTTTACATGTATGTCCCTACTGCAACCTCTTGTTGGTC
ACCCGGCCTGTGTTCAGACCTCTCTCTGCATTTCGTGCATTTTTTTTGTT
TGAAAAAAATAACTCAACGCACTTTCTTTAGTCAACTTCAGCAGTATTAA
TATTATAGTATAATATAGTATAGTATAGTATAGTATAGTATAATACCAGC
AACCCAAAAGTGTCTGCCAGCTTTTTACTGCGCGTCCCGCTTGCTCCGTT
CAGTTTCAGCTCTCAGCACACACGGGGATGAATGAGTTCAGCTGTGGAAA
CTAACAGCGGAAGTGTTGTTACAATGATCACACAGCACACACGATACGAT
ACAGTGACACATGAGGGATTTCCATTTCGTAGAAGCGAATTTGAGGATGC
TTATTTTAATTATATCATAGCCAAGGCATGACATGACATGATGACGATGG
GCATGCATGGTGCATGGTATCGGGGTTGCTTGGGAAGGGCTCCCCTTTCC
ACTATTATATGACATGGTACTGTCCTGTCTGCCGAGGGGCGTTCGGTGGG
TATGTCATACCCGTATGATATCAGGAGCGGAGCTCTGTTCTCGCTGCGAT
GATAACTCTAAATAACATCATGATACAACATGAAAATGTTTTTTTTTTAG
AGGGTCTTCTGTGCGGGGGCGGCTTCGACTGCTTGCTGCTTGCTGCTTCT
GCCGGCGTTTGCTGGTCGTGGAAGGGGGCATGATTATTTACTGTGTAGCC
TCGGAAATAGTCGCCTTGATCACCAATGTGGATACGTGTGTCCAAGCGGA
CACCAGTGCCCGTGGGACGATCTCTGTCCCGAGGCGTGGTTACTTTTTTT
GGTCTTGGTAGCGAGGAGACTAGACTAGACTCGCTGAGTTTGGTTGGCCT
TGTAGTCCGTGGGTGGACCAAGCCTTGATGCTCCGTTCTGGATCCTGATC
CTGTCGGTAGTTGATGCTCCTTCCGTCGGTAGTGGAAACCCCCAGGATGG
ATGAGTAGAATGGGGACAGATATGGGTCTAGGAAACGTGCTCTCCACAGA
AGGGTTAGTTGCTACAGGGGTACACCCGGCAATTGCGGAGCGATTTTCTC
TAAGGAAATCTTGGGCGTATGACAGGATATACAAAGAATAATGCCCCCTT
CCTGCTTGTATTTTTTAGTGGAAAACCACGTTTGCAACACAGGTGGTAAT
TCTTAATCCATCGATTAATCGATCGATCCATCCATCCATCACTAAATAAA
GTCAAGCACGTAAAAGCAACCAATAATTCAACCAATCAATGAATACTAAT
ACTTCACGTATTCAATCAGTCAATCACATGTATAAAGCAAGCGACCAAGG
AAACAATTACTCAAGCACTCATTCAATCAATCAATCAATGTATCACTTAA
ACCACCCTTTACTATGTAAACCCGAGAGCATTTCTGTTTTCGTTTTTTTT
TTGTGCCATACTACCCCCCTCTCACGGACACGACCCCCCCCACCACCATC
ACCACCATCCCCTCCAAAAACACGCCGGAATACAACGCAACTCCCGGAAC
ATGACGACGGCGACACTGACGGCCGGCTCGCGGCGCGGCGCGGCGGGGCT
CGGCTTGGGGTTGGTTATCGCGGTGGGGATACAGCTTCGAGCCTTCCGAT
GTGGGGAGGCGCGTCCGCGCTGTGCTTGATGTCCGGCGTGCAAAACGAGG
AAGACGCGTATAAGAAGTCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10247:470..4639+

>mRNA_S-dermatodea_contig10247.179.1 ID=mRNA_S-dermatodea_contig10247.179.1|Name=mRNA_S-dermatodea_contig10247.179.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at S-dermatodea_contig10247:470..4639+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGGGACGCCACTCTCAATACTGAGCGCTTTCTCTCGCGCCTAAAGCG
ACTTCACGCGCAATGGACCAAAGATGGGGGACGCCACTCTCAATACTGAG
CGCTTTCTCTCGCGCCTAAAGCGACTTCACGCGCAATGGACCAAAGCTTC
GAGCCTTCCGATGTGGGGAGGCGCGTCCGCGCTGTGCTTGATGTCCGGCG
TGCAAAACGAGGAAGACGCGTATAAGAAGTCCCTTCGAGCCTTCCGATGT
GGGGAGGCGCGTCCGCGCTGTGCTTGATGTCCGGCGTGCAAAACGAGGAA
GACGCGTATAAGAAGTCC
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