prot_S-dermatodea_contig10144.107.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig10144.107.1
Unique Nameprot_S-dermatodea_contig10144.107.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length249
Homology
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BLAST of mRNA_S-dermatodea_contig10144.107.1 vs. uniprot
Match: D7FWD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD6_ECTSI)

HSP 1 Score: 239 bits (609), Expect = 8.680e-71
Identity = 162/260 (62.31%), Postives = 184/260 (70.77%), Query Frame = 0 
Query:    1 ASPSLSFWTHACGSNPYGT--AGYTGSYXXXXXXXXXXXEARKRGVGSGGSGGTSGHWAEDTSVESPHGPGIAVSALEYHPKRDVAVTASRE-GGFCLWGLRRSAVAVESLAADTGAKGKGGGVNGEXXXGGGEVATHWACTLSVRYKEGLSATDVSFCSDGSVLAVSYSPEMQGGGQGGAGGHT-----QASLAVCVITLWSLETITLLATLLPPRTRNVR---PDSIPRSSLGFLAGSGRIFASGSGYAAVWDMVSAE 249
            ASPSLSFW HA GS+P+G+   GYTGSY XXXXXXXXXX              TSGHWA DTSVE+PHG G AV+ALEYHP+ +V VTA ++ GGF LWGLRR+  A+ESLAA   AKG GGGV  E   G GE A HWAC+LSVRYKEGL+AT VSF SDGSVLAV+YSP  +  G G  G        + S    VITLWSLET TLL+TLLPPRT++VR   P + P   LGF+A SGRI A+GSGYAAVWDMVS E
Sbjct:  146 ASPSLSFWKHARGSDPFGSNNGGYTGSYAXXXXXXXXXXXXXXXX--------TSGHWAADTSVENPHGAGNAVAALEYHPRENVVVTAGKQDGGFNLWGLRRTDNALESLAA---AKG-GGGVRAE---GEGEQAVHWACSLSVRYKEGLAATGVSFSSDGSVLAVAYSPTEEVNGDGNNGTRKGQRRRKHSTGQGVITLWSLETATLLSTLLPPRTQHVRFASPKTGPLKCLGFIAASGRIMAAGSGYAAVWDMVSPE 390
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BLAST of mRNA_S-dermatodea_contig10144.107.1 vs. uniprot
Match: A0A6H5KD90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD90_9PHAE)

HSP 1 Score: 234 bits (597), Expect = 4.700e-67
Identity = 159/260 (61.15%), Postives = 179/260 (68.85%), Query Frame = 0 
Query:    1 ASPSLSFWTHACGSNPYGT--AGYTGSYXXXXXXXXXXXEARKRGVGSGGSGGTSGHWAEDTSVESPHGPGIAVSALEYHPKRDVAVTASRE-GGFCLWGLRRSAVAVESLAADTGAKGKGGGVNGEXXXGGGEVATHWACTLSVRYKEGLSATDVSFCSDGSVLAVSYSPEMQGGGQGGAG-----GHTQASLAVCVITLWSLETITLLATLLPPRTRNVR---PDSIPRSSLGFLAGSGRIFASGSGYAAVWDMVSAE 249
            +SPSLSFW HA GS+P+G+   GYT   XXXXXXXXXXX                GHWA DTSVE+PHGPG AV+ALEYHP+ DV VTA ++ GGF LWGLRR+  A+ESLAA   AKG  GGV  E   G GE A HWAC+LSVRYKEGL+AT  SFCSDGSVLAV+YSP  +    G  G        Q S    VITLWSLET TLL+TLLPPRTR+VR   P + P   LGF+A SGRI A+GSGYAAVWDMVS E
Sbjct:  640 SSPSLSFWKHARGSDPFGSNNGGYTXXXXXXXXXXXXXXXXXXXXXX--------GHWAADTSVENPHGPGNAVAALEYHPREDVVVTAGKQDGGFNLWGLRRTDNALESLAAA--AKGGSGGVRTE---GDGEQAVHWACSLSVRYKEGLAATGASFCSDGSVLAVAYSPNEEVNWDGSNGIRKGQRRGQHSTGQGVITLWSLETATLLSTLLPPRTRHVRFASPKTGPLKCLGFIAASGRIMAAGSGYAAVWDMVSPE 886
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10144.107.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWD6_ECTSI8.680e-7162.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KD90_9PHAE4.700e-6761.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 51..249
e-value: 7.6E-7
score: 30.3
NoneNo IPR availablePANTHERPTHR44215FAMILY NOT NAMEDcoord: 54..248
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 70..246

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10144contigS-dermatodea_contig10144:396..3278 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10144.107.1mRNA_S-dermatodea_contig10144.107.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig10144 396..3278 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig10144.107.1 ID=prot_S-dermatodea_contig10144.107.1|Name=mRNA_S-dermatodea_contig10144.107.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=249bp
ASPSLSFWTHACGSNPYGTAGYTGSYAGARGGGSGGGEARKRGVGSGGSG
GTSGHWAEDTSVESPHGPGIAVSALEYHPKRDVAVTASREGGFCLWGLRR
SAVAVESLAADTGAKGKGGGVNGEGAGGGGEVATHWACTLSVRYKEGLSA
TDVSFCSDGSVLAVSYSPEMQGGGQGGAGGHTQASLAVCVITLWSLETIT
LLATLLPPRTRNVRPDSIPRSSLGFLAGSGRIFASGSGYAAVWDMVSAE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR036322WD40_repeat_dom_sf