mRNA_S-dermatodea_contig10144.107.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10144.107.1
Unique NamemRNA_S-dermatodea_contig10144.107.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig10144.107.1 vs. uniprot
Match: D7FWD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD6_ECTSI)

HSP 1 Score: 239 bits (609), Expect = 8.680e-71
Identity = 162/260 (62.31%), Postives = 184/260 (70.77%), Query Frame = 1 
Query:    1 ASPSLSFWTHACGSNPYGT--AGYTGSYXXXXXXXXXXXEARKRGVGSGGSGGTSGHWAEDTSVESPHGPGIAVSALEYHPKRDVAVTASRE-GGFCLWGLRRSAVAVESLAADTGAKGKGGGVNGEXXXGGGEVATHWACTLSVRYKEGLSATDVSFCSDGSVLAVSYSPEMQGGGQGGAGGHT-----QASLAVCVITLWSLETITLLATLLPPRTRNVR---PDSIPRSSLGFLAGSGRIFASGSGYAAVWDMVSAE 747
            ASPSLSFW HA GS+P+G+   GYTGSY XXXXXXXXXX              TSGHWA DTSVE+PHG G AV+ALEYHP+ +V VTA ++ GGF LWGLRR+  A+ESLAA   AKG GGGV  E   G GE A HWAC+LSVRYKEGL+AT VSF SDGSVLAV+YSP  +  G G  G        + S    VITLWSLET TLL+TLLPPRT++VR   P + P   LGF+A SGRI A+GSGYAAVWDMVS E
Sbjct:  146 ASPSLSFWKHARGSDPFGSNNGGYTGSYAXXXXXXXXXXXXXXXX--------TSGHWAADTSVENPHGAGNAVAALEYHPRENVVVTAGKQDGGFNLWGLRRTDNALESLAA---AKG-GGGVRAE---GEGEQAVHWACSLSVRYKEGLAATGVSFSSDGSVLAVAYSPTEEVNGDGNNGTRKGQRRRKHSTGQGVITLWSLETATLLSTLLPPRTQHVRFASPKTGPLKCLGFIAASGRIMAAGSGYAAVWDMVSPE 390
[Close]
BLAST of mRNA_S-dermatodea_contig10144.107.1 vs. uniprot
Match: A0A6H5KD90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD90_9PHAE)

HSP 1 Score: 234 bits (597), Expect = 4.700e-67
Identity = 159/260 (61.15%), Postives = 179/260 (68.85%), Query Frame = 1 
Query:    1 ASPSLSFWTHACGSNPYGT--AGYTGSYXXXXXXXXXXXEARKRGVGSGGSGGTSGHWAEDTSVESPHGPGIAVSALEYHPKRDVAVTASRE-GGFCLWGLRRSAVAVESLAADTGAKGKGGGVNGEXXXGGGEVATHWACTLSVRYKEGLSATDVSFCSDGSVLAVSYSPEMQGGGQGGAG-----GHTQASLAVCVITLWSLETITLLATLLPPRTRNVR---PDSIPRSSLGFLAGSGRIFASGSGYAAVWDMVSAE 747
            +SPSLSFW HA GS+P+G+   GYT   XXXXXXXXXXX                GHWA DTSVE+PHGPG AV+ALEYHP+ DV VTA ++ GGF LWGLRR+  A+ESLAA   AKG  GGV  E   G GE A HWAC+LSVRYKEGL+AT  SFCSDGSVLAV+YSP  +    G  G        Q S    VITLWSLET TLL+TLLPPRTR+VR   P + P   LGF+A SGRI A+GSGYAAVWDMVS E
Sbjct:  640 SSPSLSFWKHARGSDPFGSNNGGYTXXXXXXXXXXXXXXXXXXXXXX--------GHWAADTSVENPHGPGNAVAALEYHPREDVVVTAGKQDGGFNLWGLRRTDNALESLAAA--AKGGSGGVRTE---GDGEQAVHWACSLSVRYKEGLAATGASFCSDGSVLAVAYSPNEEVNWDGSNGIRKGQRRGQHSTGQGVITLWSLETATLLSTLLPPRTRHVRFASPKTGPLKCLGFIAASGRIMAAGSGYAAVWDMVSPE 886
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10144.107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWD6_ECTSI8.680e-7162.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KD90_9PHAE4.700e-6761.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10144contigS-dermatodea_contig10144:396..3278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD40-repeat-containing domain
Ec32 orthologEc-09_004080.1
Exons3
Model size747
Cds size747
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10144.107.1prot_S-dermatodea_contig10144.107.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10144 396..3278 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924141.5796056-CDS-S-dermatodea_contig10144:395..8181622924141.5796056-CDS-S-dermatodea_contig10144:395..818Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10144 396..818 +
1694079045.9476082-CDS-S-dermatodea_contig10144:395..8181694079045.9476082-CDS-S-dermatodea_contig10144:395..818Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10144 396..818 +
1622924141.5888832-CDS-S-dermatodea_contig10144:1354..14961622924141.5888832-CDS-S-dermatodea_contig10144:1354..1496Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10144 1355..1496 +
1694079045.9560583-CDS-S-dermatodea_contig10144:1354..14961694079045.9560583-CDS-S-dermatodea_contig10144:1354..1496Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10144 1355..1496 +
1622924141.5978787-CDS-S-dermatodea_contig10144:3096..32781622924141.5978787-CDS-S-dermatodea_contig10144:3096..3278Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10144 3097..3278 +
1694079045.9648054-CDS-S-dermatodea_contig10144:3096..32781694079045.9648054-CDS-S-dermatodea_contig10144:3096..3278Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10144 3097..3278 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10144.107.1

>prot_S-dermatodea_contig10144.107.1 ID=prot_S-dermatodea_contig10144.107.1|Name=mRNA_S-dermatodea_contig10144.107.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=249bp
ASPSLSFWTHACGSNPYGTAGYTGSYAGARGGGSGGGEARKRGVGSGGSG
GTSGHWAEDTSVESPHGPGIAVSALEYHPKRDVAVTASREGGFCLWGLRR
SAVAVESLAADTGAKGKGGGVNGEGAGGGGEVATHWACTLSVRYKEGLSA
TDVSFCSDGSVLAVSYSPEMQGGGQGGAGGHTQASLAVCVITLWSLETIT
LLATLLPPRTRNVRPDSIPRSSLGFLAGSGRIFASGSGYAAVWDMVSAE
back to top

mRNA from alignment at S-dermatodea_contig10144:396..3278+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10144.107.1 ID=mRNA_S-dermatodea_contig10144.107.1|Name=mRNA_S-dermatodea_contig10144.107.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2883bp|location=Sequence derived from alignment at S-dermatodea_contig10144:396..3278+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGTCCCCTTCCCTCTCCTTCTGGACGCACGCGTGCGGCTCAAACCCTTA
CGGTACCGCGGGCTACACGGGGAGCTACGCGGGCGCGCGGGGCGGAGGAA
GCGGCGGCGGCGAAGCGAGGAAGAGGGGCGTTGGTAGTGGTGGCAGTGGT
GGGACCTCGGGGCATTGGGCGGAGGACACCAGCGTGGAGAGCCCGCACGG
TCCGGGCATCGCGGTGTCCGCGCTGGAGTATCACCCGAAGCGGGATGTGG
CCGTCACTGCCTCGAGGGAGGGGGGCTTTTGTCTGTGGGGGCTGAGGAGG
AGTGCTGTTGCGGTGGAGTCGCTCGCCGCCGATACGGGTGCTAAGGGTAA
AGGAGGTGGAGTGAACGGGGAGGGGGCGGGCGGAGGGGGGGAGGTGGCGA
CTCATTGGGCGTGTACCCTCTCGGTGAGCCTTGGAGATTTTTATTTTTTT
ATTTTTTTTGTTTTTGTTTTTCTTGTTTTCCCACCACCACCGTCAGTGAC
ACCACAAGTCGCCGTTGGATTGGTTTGATATTGCAATACTCACACACACA
CACACACACACACGCGCACGTACACAAACACACAAACTCACACTATTGTG
TCAACTAGTGGGTAGCCACACGGCTACCCTCGTTAGGTGTGCGGTGGCTG
CACAAATTTCTGTAAGTACTGCTCTGCAAAGGTACCGCTCTGAATATATA
TACACCTCCATACGTTTTTTTTTGTTGTTGTTGCTTATATCCCACCGCCA
CCGTCAGTCACATCAATTGCAAGTGACCGTTGGTTTGTTGGTTGGATTGA
TTTGATACTGCAACGCACAAACACACACACACGTTCACCCTAAAACAAAG
CAAAAACACAATTATTGTCTCATACCCACCCCCACCCCCATCCCCACCCC
ATCCTTTTCCCTCCTCGCGCATGCTTGTTTTCTCGCCCGGTCAACGTTAC
CGGAGACAGGTCCGATACAAGGAGGGGCTGTCGGCGACCGACGTCTCCTT
CTGCTCGGACGGCTCGGTGCTAGCCGTGTCGTACAGCCCGGAGATGCAAG
GGGGGGGGCAAGGTGGGGCAGGGGGGCATACTCAAGCATCCTTAGCTGTT
TGTTAGGCCATTGACCGGGGGCGGGGGGCTGGCGGGCGGGGCGCGGGGGG
GGTGTACTCATTGATCGTGCATGCCGTAGTCGTTAGACCATAGACCTCGC
ATCCCCACAAAGCCGGGACGGAGCACGCCGGGTTTTCGCGGGACCAGGCG
GGGGGCGTACTTGTGTTTTGTATGCCTTACCTGTTAAACCATTGACCACG
CTTCCTCGAGAGGATAGGGCGGAACATTGTTCCCACAGGATCGATCGCCG
ATGGCCAATCTTTTCTTCCTACTTTGCCGAACGTGGCGTAAAAAACTTTT
TCTCGTTCCTGTGTACATCAGTTCTCGCCTCTTCTCAGGCCACTTTTTAT
CCCCCAGTATAGCGGGGGGGGGTTCGATTTTATGAGGCGTTATTTTTCCG
TCCGTTATCGTAGAAAGCGTGTCGCGTACAGCAGTATTAATAGTCCGAAT
CCCGTTCCGGAGATTAGGTTGTTTTCCTCGTGCAGTATTATATATATATT
TAATGTACAGTACAACAGTATGCATGTTCTAAATATAATACGTGCTGCGT
ACTAACTTGATTGATTGATTGATTGATTTGATTGATTTGCACACGTATAG
CCGATCGATTAAATCCGACCCGACTTGTGGTCAGATGCTTTATAGCAAAG
AGTCAAGGAGAAAATAACTAATCATAACTCTACTTCTACTATACACCATG
CCGTCCCTGGTACTTACTACAGCACAAGAGAGGAGATACAGCAACCTCAG
GCATGGAAAACGCTATTAACCCTTTTGGAACTAAAGCTGTTTTCGGGTAA
CTGTTAGGGTAAAAAACAATAGCAGACAGTTACCCGAAAACAGATTTAGT
CCCAAAAGGGTTAACCCTGAAGAGGAATCGAATCGGACAATGCTCCCTCG
CCTCTCCGCCAGGTTCTGTGTGCGTAGGTAGAATAATAGTTTAGAGCTTG
TCCGTTTCCATTTGCTCTTTTTTTTCTTTTTTTGCGCTTGTGTATGATGT
GTTTTCATATTCCCCAACGCCTACACTTTTGTGGAGGCGTTTTTGGCTAA
ACTTTTGTGGATTTGGCTAAACTTTTGTGGAGGCGTTTTTGGCTAATGTA
TTGTGGAAGCGTTTTTGGCTAAACTTTTGTGGAAGCGTTTTTGGCTAAGC
TTTTATGGAGGCGTTTTGTGGTTCCAGGCATGATGCTTGCAGACAGACGC
TGTTGTCGTAGGTTGATTAATGGATGCTTTAACACAAAGAGTATGTGACT
TGACGGCGATAACCCCTCCCCCCCCCTGAAAACAATGTGCAACATATGGT
TGCCCGGTAAGTCCCATCAACCCCATGGCGTATCGGTTGGCGTCGCAAAC
GCAAGGATGGTGTATGACTATTATAGCAGCTGGTATAATCCTTGTGAAAA
CGCCGCCTGGCCGGCGAACAGAAAACCCGGCGTATCGCTTTTATTTCCCG
GCATTGTTGAGACGCGTGGTCTACGTACGTCTGGATACGACATGCTTTTA
ACAAAAGTACCTCCTCCCCTCCCCCTTCTTCCTCTCTCCCCCCTGCCCTC
CCCCATCTCTCCACCTTGGTGGCGTTTTTGTGCCCACACGTTACATGTTA
GGCGTCATCACCCTGTGGTCGTTGGAGACGATCACACTCCTGGCGACCCT
GTTGCCCCCCAGAACGCGGAACGTCCGCCCTGATTCGATCCCGCGAAGCT
CCTTGGGTTTCCTAGCGGGAAGCGGCAGGATTTTCGCGTCGGGGTCTGGG
TATGCGGCGGTCTGGGATATGGTGTCGGCCGAG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig10144:396..3278+

>mRNA_S-dermatodea_contig10144.107.1 ID=mRNA_S-dermatodea_contig10144.107.1|Name=mRNA_S-dermatodea_contig10144.107.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1494bp|location=Sequence derived from alignment at S-dermatodea_contig10144:396..3278+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGTCCCCTTCCCTCTCCTTCTGGACGCACGCGTGCGGCTCAAACCCTTA
CGGTACCGCGGGCTACACGGGGAGCTACGCGGGCGCGCGGGGCGGAGGAA
GCGGCGGCGGCGAAGCGAGGAAGAGGGGCGTTGGTAGTGGTGGCAGTGGT
GGGACCTCGGGGCATTGGGCGGAGGACACCAGCGTGGAGAGCCCGCACGG
TCCGGGCATCGCGGTGTCCGCGCTGGAGTATCACCCGAAGCGGGATGTGG
CCGTCACTGCCTCGAGGGAGGGGGGCTTTTGTCTGTGGGGGCTGAGGAGG
AGTGCTGTTGCGGTGGAGTCGCTCGCCGCCGATACGGGTGCTAAGGGTAA
AGGAGGTGGAGTGAACGGGGAGGGGGCGGGCGGAGGGGGGGAGGTGGCGA
CTCATTGGGCGTGTACCCTCTCGGCGTCCCCTTCCCTCTCCTTCTGGACG
CACGCGTGCGGCTCAAACCCTTACGGTACCGCGGGCTACACGGGGAGCTA
CGCGGGCGCGCGGGGCGGAGGAAGCGGCGGCGGCGAAGCGAGGAAGAGGG
GCGTTGGTAGTGGTGGCAGTGGTGGGACCTCGGGGCATTGGGCGGAGGAC
ACCAGCGTGGAGAGCCCGCACGGTCCGGGCATCGCGGTGTCCGCGCTGGA
GTATCACCCGAAGCGGGATGTGGCCGTCACTGCCTCGAGGGAGGGGGGCT
TTTGTCTGTGGGGGCTGAGGAGGAGTGCTGTTGCGGTGGAGTCGCTCGCC
GCCGATACGGGTGCTAAGGGTAAAGGAGGTGGAGTGAACGGGGAGGGGGC
GGGCGGAGGGGGGGAGGTGGCGACTCATTGGGCGTGTACCCTCTCGGTCC
GATACAAGGAGGGGCTGTCGGCGACCGACGTCTCCTTCTGCTCGGACGGC
TCGGTGCTAGCCGTGTCGTACAGCCCGGAGATGCAAGGGGGGGGGCAAGG
TGGGGCAGGGGGGCATACTCAAGCATCCTTAGCTGTTTGTCCGATACAAG
GAGGGGCTGTCGGCGACCGACGTCTCCTTCTGCTCGGACGGCTCGGTGCT
AGCCGTGTCGTACAGCCCGGAGATGCAAGGGGGGGGGCAAGGTGGGGCAG
GGGGGCATACTCAAGCATCCTTAGCTGTTTGCGTCATCACCCTGTGGTCG
TTGGAGACGATCACACTCCTGGCGACCCTGTTGCCCCCCAGAACGCGGAA
CGTCCGCCCTGATTCGATCCCGCGAAGCTCCTTGGGTTTCCTAGCGGGAA
GCGGCAGGATTTTCGCGTCGGGGTCTGGGTATGCGGCGGTCTGGGATATG
GTGTCGGCCGAGGCGTCATCACCCTGTGGTCGTTGGAGACGATCACACTC
CTGGCGACCCTGTTGCCCCCCAGAACGCGGAACGTCCGCCCTGATTCGAT
CCCGCGAAGCTCCTTGGGTTTCCTAGCGGGAAGCGGCAGGATTTTCGCGT
CGGGGTCTGGGTATGCGGCGGTCTGGGATATGGTGTCGGCCGAG
back to top