mRNA_S-dermatodea_contig9991.17909.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9991.17909.1
Unique NamemRNA_S-dermatodea_contig9991.17909.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9991.17909.1 vs. uniprot
Match: D8LQP5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQP5_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 2.770e-33
Identity = 128/336 (38.10%), Postives = 161/336 (47.92%), Query Frame = 1 
Query:  103 GKKLQTVMRVRAEDERTMALLRKECDGAVLASMDAQRKQEQALSLVSGLQADVDALQAQVEVLQSALWLERERANSARKEQKTAEATLAKLGPSSKTAAGTRPVARAVGGNIDFV---------------------------AATTRQRGG------GGRGSR--PATSPATPLTPSARGKNRGKLPGGRLGAARG-----GVGEWSEFYDSRSDSLIDQIINESGGGE-----TLAA-------------FSTEGIQA-RVSPGGDGEGSNVRDGGFVLDLEGRRASGMFGGGGVYAGRPQDS-----PRVTAFQRWKEERGILSPGVAQKFARQ 918
            G KL TVM VRAEDERTMALLRKECD +++ SM+A+ K++QA++LVSGLQAD++ALQ QV VLQSALWLE+ERA++A        A+   +GPS  T  G    A  + G+                                 + ++R G      G RG R  PAT+PA           RGKLP G  G   G     G G             +  + +E GGG      T A              F   G  A   SP G  +  ++    FVLDL+GRR  G  GGGG   G   +S       +T FQRWK ERGI+SPGVA+ F  Q
Sbjct:    9 GNKLHTVMSVRAEDERTMALLRKECDQSMVTSMEAKIKEKQAMTLVSGLQADIEALQTQVGVLQSALWLEKERASAA------VRASRGAIGPS--TRGGVSKAALTMTGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGPSGKRRNGIPLKRIGERGGRRRPATAPAKDTQAL-----RGKLPHGNAGDLYGRNKPRGGGVGGNCSSQHLGGGLGFLASEQGGGAGSPDGTTATDGSFTDAWASNDYFHGAGAGAGEKSPQGYQQERSIEQ--FVLDLDGRR--GYAGGGGSGTGGEVESGGGGQTTITPFQRWKRERGIVSPGVAEMFGGQ 327
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9991.17909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQP5_ECTSI2.770e-3338.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9991contigS-dermatodea_contig9991:214..3573 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size936
Cds size909
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9991.17909.1prot_S-dermatodea_contig9991.17909.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9991 241..3573 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925442.2580416-UTR-S-dermatodea_contig9991:213..2401622925442.2580416-UTR-S-dermatodea_contig9991:213..240Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9991 214..240 +
1694079936.4819741-UTR-S-dermatodea_contig9991:213..2401694079936.4819741-UTR-S-dermatodea_contig9991:213..240Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9991 214..240 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925442.2724128-CDS-S-dermatodea_contig9991:240..2821622925442.2724128-CDS-S-dermatodea_contig9991:240..282Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9991 241..282 +
1694079936.4981244-CDS-S-dermatodea_contig9991:240..2821694079936.4981244-CDS-S-dermatodea_contig9991:240..282Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9991 241..282 +
1622925442.285407-CDS-S-dermatodea_contig9991:697..7311622925442.285407-CDS-S-dermatodea_contig9991:697..731Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9991 698..731 +
1694079936.5072968-CDS-S-dermatodea_contig9991:697..7311694079936.5072968-CDS-S-dermatodea_contig9991:697..731Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9991 698..731 +
1622925442.2957582-CDS-S-dermatodea_contig9991:921..9891622925442.2957582-CDS-S-dermatodea_contig9991:921..989Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9991 922..989 +
1694079936.5163252-CDS-S-dermatodea_contig9991:921..9891694079936.5163252-CDS-S-dermatodea_contig9991:921..989Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9991 922..989 +
1622925442.3080714-CDS-S-dermatodea_contig9991:2064..21721622925442.3080714-CDS-S-dermatodea_contig9991:2064..2172Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9991 2065..2172 +
1694079936.5259569-CDS-S-dermatodea_contig9991:2064..21721694079936.5259569-CDS-S-dermatodea_contig9991:2064..2172Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9991 2065..2172 +
1622925442.321745-CDS-S-dermatodea_contig9991:2916..35731622925442.321745-CDS-S-dermatodea_contig9991:2916..3573Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9991 2917..3573 +
1694079936.5360103-CDS-S-dermatodea_contig9991:2916..35731694079936.5360103-CDS-S-dermatodea_contig9991:2916..3573Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9991 2917..3573 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9991.17909.1

>prot_S-dermatodea_contig9991.17909.1 ID=prot_S-dermatodea_contig9991.17909.1|Name=mRNA_S-dermatodea_contig9991.17909.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=303bp
MQESLKVERVIVKQCNQLKSELVSSGKKLQTVMRVRAEDERTMALLRKEC
DGAVLASMDAQRKQEQALSLVSGLQADVDALQAQVEVLQSALWLERERAN
SARKEQKTAEATLAKLGPSSKTAAGTRPVARAVGGNIDFVAATTRQRGGG
GRGSRPATSPATPLTPSARGKNRGKLPGGRLGAARGGVGEWSEFYDSRSD
SLIDQIINESGGGETLAAFSTEGIQARVSPGGDGEGSNVRDGGFVLDLEG
RRASGMFGGGGVYAGRPQDSPRVTAFQRWKEERGILSPGVAQKFARQAGY
RG*
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mRNA from alignment at S-dermatodea_contig9991:214..3573+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9991.17909.1 ID=mRNA_S-dermatodea_contig9991.17909.1|Name=mRNA_S-dermatodea_contig9991.17909.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3360bp|location=Sequence derived from alignment at S-dermatodea_contig9991:214..3573+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAACAGTTTCGCCGGATTCAGGAGTCGATGCAGGAATCTCTGAAGGTCGA
GCGTGTGATTGTCAAGCAGGTGAGATCTGGTATTTTTACGTATCGGTTAG
AATCAGCACAAGCATTCTCGCTCCACGGCTAGTTTCCCGCAGCGTTACTA
TGCTCACAGAGTAACATAGTACTCTGTACGCATACAACAAATTGCGGTTC
TGCGTCCACGTCTCAGTTGCTGTGTGACTATGGCAACATGAAGTGTGTAG
CAAAAGTGTATACTGGTACATGATAGCCAACTACGTTTCTTGCGAAATGC
CAACAATAACAGAGCAGGCTCAGGCATTTGGCATGCCTAGTTATGCACAA
TGGAGCGTTGCGTGTGCTTCGACATATTCCCGTCAATGTGGAGTTATATC
GTTCACCTTCATCCCGAACGGCGACCACTTCCCATTCCTTCTCTTTTGCT
CGCTGTCGCCGTGTGTCCGAAAAACAACAAACAGTGCAACCAGCTCAAGT
CGGAGCTCGTCTCAAGTGGTAAGAAGCCTTGACGTACAATAAGCGCAGCG
GATCCGTCTGGATGCTCGCCCAGAAGCACGAGGATACGGGGCTACCGCTC
ACTGACAGAGCTACGCCCGGCTGAGCACTATGCACCAGGAAGGGTGAAAT
GTCGACAACTGACCCTGGTATTATTTAACCTCCCCGCCCGTGCGTACGCT
TGTTGAAGGCAAGAAGCTGCAGACGGTGATGCGGGTGCGGGCGGAGGACG
AACGGACCATGGCTTTGTTGCGCAAGGTAGGGCTGATCGCCGGAAAAATA
AACTGACAAGAAAACAGAGAGGTCAGAAACTCCTGTGTTCGTTCACGCTT
TGATTTCAATTTTCGACGTTCGTTTTCTGCCACGATGTGCGTGTGTGTGG
TCGGGGTCCGACATGTTTTGTCGGCTTTGTAATATATGAGTTTCCCCGGG
TGCCGTCCTGAGTAGGATTGTGTATGGCTGTGCGCCATTTATCATTTTTG
AACCTCGTCGTGGCCACTCTATGAGATCGTGTTGTTTTTAGCTAAAAATA
CGTTTGTTATTGCCCCTTGATGTGGGGTGCGGCTCTGCCTCTGTTCGTAC
GCTCCGCAACGTCCGCCTACATATAACCAGCGTAGAGGATACGACCTCTT
GCGTTCTTGGTACCTACTCGCCTTACGATATCCTCATGGCCAACGTATCT
CATGTCATAATGTGCCATCAAAGAACTCTTATCCCAGTAACTCTTCGGCG
AGTCGTGGTTTCGGGTGCATCGTCGGAATATCGGGCACATCGATCACTCG
TATTTGATGCGCTGCGCTGACAGCACGGGTAATTTCTCCGTGATCGTGCC
GAAGGCATCGTCCATCGTACTCAATCACCGTCATGCCCGGGGAGCTGCCG
TAACAAACGTTCGACGTGAAGTTCTCGTCCGACTTAGTAAATCAGTAACC
GACGCATCAGTTGCGGAGGTCGTCGATCTACGAAGTGATAAAATTTTGAC
GCCGTACGGATGCGGTACTACTGTGCCTCGCCCCCCGAAGGAAGTCGTGA
GGGCGCGATTCTCGTCCAAATTGCTTGACTGAGGGACTAAACCGTCGCGG
GTGACATCCCCACGTTACACCCAACATCAGAGATCTGTCGGGCCGCTAGG
CACGCTCAGTCACCGATGGATAGGATTCCACTTAAGAATTGGTTTCGGAG
ACCACGAGTTAGCCTACTAAAAACCACGCACCATCAAGCCGCCCTCGCAA
GAGGCGGGTTCGTATTGCATCGCTTACCTCGCCCGTGTATATATATCTTC
ACGGATCCAGACCCCTCAATTGCACAAATACGGCGCGTGTTTTCCGGTTA
GGAGTGCGACGGGGCTGTTTTAGCCTCGATGGATGCCCAGAGGAAGCAAG
AGCAGGCGCTGTCCCTTGTTTCGGGGCTACAGGCTGACGTCGACGCTCTT
CAAGCGCAGGTACATAACATTCCAGCACGATTTTTTTCTTTCATTTCCGA
CTTGTTCAAAGTTTTTTTTCCGACTCTTTCCACATGGGCAGCCTAAAAAT
TAAAGAGCAAGTGCGATTGTGTGCACGGGCGTGTTGCTCTGCCGGTCAGT
GTCGGATGTCTATTTAGGGGGGCGGGGGGCGGGGGTTCTATATGTTTCTG
AAATCTGTATTTTTTTAGGGGGGGGGGGGGGGCAGAACCCATTCCTAGAG
TTACCTCTTGATTTTCATGTGACACGATAGCATCGTATGTAATGTAGGCT
TCCACTGAGTTAGATTTGGCCATCTTTTTCCTCTACCAAAAAGAGTGGTT
GGACCCCAATGCTAGTTCTACGTTCATAGATATGTTATTATACTGTCTTC
AGGGGGGGCAGAGCGGTCGGTTCCAGGAGGTCATTTTTTGTTCACGCTGT
GATACTGTTTCGCGGTTAAACTGCTACAGCCGTGTAGGTCTTGAGAATTG
CGTTCTTACTGCAACATCCGAATGCTTTACCGTCGTTGGATGGACGTGCG
TACACGAAACAAGACCCATGTTAGGTACCATGTCATTATCGCTACGACAC
TCCGTCAAGAACAGCAAGCCAACCGCGTACTCCGTTCGACCGCACACAAG
AACTGTGTGGAGAATTCCTCAACGAGCCGCTGCGGGTTACCTGAGCAAAA
AGAGGCACCCCTTCCCCCTCCACAACCCCCAAATCACCAACGCCCACGTT
CAGGTCGAAGTCCTCCAGAGTGCCCTCTGGCTCGAGCGAGAGCGGGCGAA
CTCAGCTAGAAAAGAGCAAAAGACCGCCGAGGCCACCCTGGCCAAGCTGG
GCCCTTCCAGCAAAACCGCAGCTGGCACAAGGCCTGTCGCTCGTGCTGTC
GGAGGAAATATCGATTTCGTCGCAGCTACTACCAGACAGCGGGGAGGGGG
GGGGCGCGGTTCCCGACCAGCGACATCGCCCGCGACGCCCCTGACACCGT
CAGCACGGGGAAAAAATCGCGGAAAGCTTCCGGGCGGGCGGTTGGGCGCG
GCCCGTGGTGGTGTGGGGGAGTGGAGCGAGTTCTACGATAGCAGAAGCGA
TAGCTTGATCGATCAGATTATAAATGAGTCAGGTGGTGGGGAAACTTTGG
CGGCGTTTTCGACGGAAGGGATCCAGGCACGGGTGTCCCCTGGAGGCGAC
GGCGAAGGCTCAAACGTGCGGGACGGTGGATTTGTTCTAGACCTTGAAGG
CCGAAGAGCCAGCGGAATGTTTGGGGGTGGCGGCGTGTACGCCGGGCGGC
CCCAAGACTCGCCGAGAGTTACCGCGTTCCAGAGGTGGAAGGAAGAGAGA
GGAATATTATCGCCCGGGGTGGCGCAGAAGTTCGCCCGCCAGGCGGGATA
CAGAGGATAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9991:214..3573+

>mRNA_S-dermatodea_contig9991.17909.1 ID=mRNA_S-dermatodea_contig9991.17909.1|Name=mRNA_S-dermatodea_contig9991.17909.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1818bp|location=Sequence derived from alignment at S-dermatodea_contig9991:214..3573+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCAGGAATCTCTGAAGGTCGAGCGTGTGATTGTCAAGCAGATGCAGGA
ATCTCTGAAGGTCGAGCGTGTGATTGTCAAGCAGTGCAACCAGCTCAAGT
CGGAGCTCGTCTCAAGTGTGCAACCAGCTCAAGTCGGAGCTCGTCTCAAG
TGGCAAGAAGCTGCAGACGGTGATGCGGGTGCGGGCGGAGGACGAACGGA
CCATGGCTTTGTTGCGCAAGGCAAGAAGCTGCAGACGGTGATGCGGGTGC
GGGCGGAGGACGAACGGACCATGGCTTTGTTGCGCAAGGAGTGCGACGGG
GCTGTTTTAGCCTCGATGGATGCCCAGAGGAAGCAAGAGCAGGCGCTGTC
CCTTGTTTCGGGGCTACAGGCTGACGTCGACGCTCTTCAAGCGCAGGAGT
GCGACGGGGCTGTTTTAGCCTCGATGGATGCCCAGAGGAAGCAAGAGCAG
GCGCTGTCCCTTGTTTCGGGGCTACAGGCTGACGTCGACGCTCTTCAAGC
GCAGGTCGAAGTCCTCCAGAGTGCCCTCTGGCTCGAGCGAGAGCGGGCGA
ACTCAGCTAGAAAAGAGCAAAAGACCGCCGAGGCCACCCTGGCCAAGCTG
GGCCCTTCCAGCAAAACCGCAGCTGGCACAAGGCCTGTCGCTCGTGCTGT
CGGAGGAAATATCGATTTCGTCGCAGCTACTACCAGACAGCGGGGAGGGG
GGGGGCGCGGTTCCCGACCAGCGACATCGCCCGCGACGCCCCTGACACCG
TCAGCACGGGGAAAAAATCGCGGAAAGCTTCCGGGCGGGCGGTTGGGCGC
GGCCCGTGGTGGTGTGGGGGAGTGGAGCGAGTTCTACGATAGCAGAAGCG
ATAGCTTGATCGATCAGATTATAAATGAGTCAGGTGGTGGGGAAACTTTG
GCGGCGTTTTCGACGGAAGGGATCCAGGCACGGGTGTCCCCTGGAGGCGA
CGGCGAAGGCTCAAACGTGCGGGACGGTGGATTTGTTCTAGACCTTGAAG
GCCGAAGAGCCAGCGGAATGTTTGGGGGTGGCGGCGTGTACGCCGGGCGG
CCCCAAGACTCGCCGAGAGTTACCGCGTTCCAGAGGTGGAAGGAAGAGAG
AGGAATATTATCGCCCGGGGTGGCGCAGAAGTTCGCCCGCCAGGCGGGAT
ACAGAGGATAAGTCGAAGTCCTCCAGAGTGCCCTCTGGCTCGAGCGAGAG
CGGGCGAACTCAGCTAGAAAAGAGCAAAAGACCGCCGAGGCCACCCTGGC
CAAGCTGGGCCCTTCCAGCAAAACCGCAGCTGGCACAAGGCCTGTCGCTC
GTGCTGTCGGAGGAAATATCGATTTCGTCGCAGCTACTACCAGACAGCGG
GGAGGGGGGGGGCGCGGTTCCCGACCAGCGACATCGCCCGCGACGCCCCT
GACACCGTCAGCACGGGGAAAAAATCGCGGAAAGCTTCCGGGCGGGCGGT
TGGGCGCGGCCCGTGGTGGTGTGGGGGAGTGGAGCGAGTTCTACGATAGC
AGAAGCGATAGCTTGATCGATCAGATTATAAATGAGTCAGGTGGTGGGGA
AACTTTGGCGGCGTTTTCGACGGAAGGGATCCAGGCACGGGTGTCCCCTG
GAGGCGACGGCGAAGGCTCAAACGTGCGGGACGGTGGATTTGTTCTAGAC
CTTGAAGGCCGAAGAGCCAGCGGAATGTTTGGGGGTGGCGGCGTGTACGC
CGGGCGGCCCCAAGACTCGCCGAGAGTTACCGCGTTCCAGAGGTGGAAGG
AAGAGAGAGGAATATTATCGCCCGGGGTGGCGCAGAAGTTCGCCCGCCAG
GCGGGATACAGAGGATAA
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