mRNA_S-dermatodea_contig9973.17896.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9973.17896.1
Unique NamemRNA_S-dermatodea_contig9973.17896.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9973.17896.1 vs. uniprot
Match: D7FXN8_ECTSI (MYND-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXN8_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 6.600e-46
Identity = 99/191 (51.83%), Postives = 123/191 (64.40%), Query Frame = 1 
Query:    1 LQGRRSAERVKRERAAFAAVGLRQLPSGNLLSRSWGLASLSPKLDCITAYSKMRQQYLMDGVLDPIPLLVVEEGAAPRRRPPSNLVNPLLLVTEKKGVAYSLHYGAFPLDAFHTDVAWWKLRDESVQDEHGKLAPTVVRRQEPGVLG--CRELPVAPAATPATQRGIQNAWLGAALEELAQMCGAFLGVTA 567
            LQ   +A RVKRERAA            ++ SR+ GLAS     DC+  Y++MR+++L  GVLDP PLL+ +   + +RR   +LVNPLLLVTE KG+AYSLHY AFPLDAFHTDV WWKLR E++Q E GK+AP V + Q   + G    + P +   T  TQR  QN W   ALEELAQMCGAF+  TA
Sbjct:  245 LQREGAAARVKRERAAVIGTYCPPRDDLSIHSRAMGLASFRQG-DCMNPYAEMRREFLKKGVLDPFPLLLEDGAESGKRRGSFDLVNPLLLVTETKGMAYSLHYAAFPLDAFHTDVCWWKLRPENLQGEFGKVAPKVTKPQGFNLAGSGATQGPFSFKPTAKTQRDTQNVWFVTALEELAQMCGAFVRATA 434
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BLAST of mRNA_S-dermatodea_contig9973.17896.1 vs. uniprot
Match: D8LNQ8_ECTSI (MYND-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNQ8_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 3.100e-45
Identity = 101/186 (54.30%), Postives = 124/186 (66.67%), Query Frame = 1 
Query:   25 RVKRERAAFAAVGLRQLPS--GNLLSRSWGLASLSPKLDCITAYSKMRQQYLMDGVLDPIPLLVVEEGAAPRRRPPSNLVNPLLLVTEKKGVAYSLHYGAFPLDAFHTDVAWWKLRDESVQDEHGKLAPTVVRRQEPGV---LGCRELPVAPAATPATQRGI-QNAWLGAALEELAQMCGAFLGVT 564
            R++RER AF     + +P   GN++SR+ GL+S     + I A +KMR+QYL +G+LDP PLL+ EEGA   RR P   VNPLLLVTE+KG A SLHYGAFPLDAFHTDV+WWK+R ES+QDE GKLA  V + ++ G    LG           P    G+ Q+AW G ALEELAQMCGAFL  T
Sbjct:  253 RIRRERTAFLT---KYMPKSMGNIISRAMGLSSFCQG-ESIEANAKMRRQYLREGILDPFPLLL-EEGAPAVRRGPFRKVNPLLLVTERKGAASSLHYGAFPLDAFHTDVSWWKVRPESLQDEFGKLARRVTKHRDAGSHSGLG----------GPKVANGVRQDAWFGTALEELAQMCGAFLAAT 423
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BLAST of mRNA_S-dermatodea_contig9973.17896.1 vs. uniprot
Match: D8LCP5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCP5_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 9.570e-30
Identity = 75/143 (52.45%), Postives = 90/143 (62.94%), Query Frame = 1 
Query:  169 YLMDGVLDPIPLLVVEEGAAPRRRPPSNLVNPLLLVTEKKGVAYSLHYGAFPLDAFHTDVAWWKLRDESVQDEHGKLAPTVVRRQEP----GVLGCRELPVAPAATPATQRGIQNAWLGAALEELAQMCGAFLGVTAMPRGSS 585
            +L +G+LDP PLL  +  A  +RR P  LVNPLLLVTE+KG A SLHYGAFPLDAF+T  + WKLR +S QDE+G+ APTV + +E     G  G R   +  +         Q AWL AALEELAQMCGA L  TA     S
Sbjct:  121 HLREGILDPFPLLCEDTPA--KRRGPCKLVNPLLLVTERKGAASSLHYGAFPLDAFNT-ASLWKLRPQSFQDEYGQQAPTVTKPREMNSQIGGGGSRVTSIPTSVA-------QQAWLSAALEELAQMCGALLRATATSNADS 253
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BLAST of mRNA_S-dermatodea_contig9973.17896.1 vs. uniprot
Match: A0A6H5JFV6_9PHAE (MYND-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFV6_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 6.360e-26
Identity = 82/190 (43.16%), Postives = 101/190 (53.16%), Query Frame = 1 
Query:   25 RVKRERAAFAAVGLRQLPSG---NLLSRSWGLASLSPKLDCITAYSKMRQQYLMDGVLDPIPLLVVEEGAAPRRRPPSNLVNPLLLVTEKKGVAYSLHYGAFPLDAFHTDVAWWKLRDESVQDEHGKLAPTVVRRQEPGVLGCRELPVAPAATPATQRGIQNAWLGAALEELAQMCGAFLGVTAMPRGSS 585
            ++++ER+AF A   + +P G   N +SR+ GLAS     + + A SKMR+QYL +G+LDP PLL   E    +RR P  LVNPLLLVTE+KG A SLHYGAFPLDAF+T                             G  G R   +  +         Q AWL  ALEELAQMCGA L VTA     S
Sbjct:  140 KIRQERSAFLA---KYMPKGKKLNFVSRAMGLASCRLP-ETMEASSKMRRQYLREGILDPFPLL--REDTPAKRRGPCKLVNPLLLVTERKGAASSLHYGAFPLDAFNTG----------------------------GGEGSRVTSIPTSIA-------QEAWLSTALEELAQMCGALLRVTATSNADS 288
[Close]
BLAST of mRNA_S-dermatodea_contig9973.17896.1 vs. uniprot
Match: D8LNQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ6_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 9.250e-9
Identity = 36/73 (49.32%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:  346 VAWWKLRDESVQDEHGKLAPTVVRRQEPGVLGCRELPVAPAATPATQRGIQNAWLGAALEELAQMCGAFLGVT 564
            ++WWKLR E +Q + GKL+P V +  E    G    P  P    A +   QNAW G ALEELAQMCGAFL  T
Sbjct:  202 LSWWKLRPERLQGDFGKLSPRVTKHLE---AGAHSGPGEPKVANALR---QNAWFGTALEELAQMCGAFLAAT 268
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9973.17896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FXN8_ECTSI6.600e-4651.83MYND-type domain-containing protein n=2 Tax=Ectoca... [more]
D8LNQ8_ECTSI3.100e-4554.30MYND-type domain-containing protein n=2 Tax=Ectoca... [more]
D8LCP5_ECTSI9.570e-3052.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JFV6_9PHAE6.360e-2643.16MYND-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LNQ6_ECTSI9.250e-949.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9973contigS-dermatodea_contig9973:3762..5661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size586
Cds size585
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9973.17896.1prot_S-dermatodea_contig9973.17896.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9973 3763..5661 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925441.0492728-CDS-S-dermatodea_contig9973:3762..40011622925441.0492728-CDS-S-dermatodea_contig9973:3762..4001Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9973 3763..4001 -
1694079935.6002293-CDS-S-dermatodea_contig9973:3762..40011694079935.6002293-CDS-S-dermatodea_contig9973:3762..4001Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9973 3763..4001 -
1622925441.061976-CDS-S-dermatodea_contig9973:4931..51081622925441.061976-CDS-S-dermatodea_contig9973:4931..5108Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9973 4932..5108 -
1694079935.6090353-CDS-S-dermatodea_contig9973:4931..51081694079935.6090353-CDS-S-dermatodea_contig9973:4931..5108Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9973 4932..5108 -
1622925441.0789177-CDS-S-dermatodea_contig9973:5492..56611622925441.0789177-CDS-S-dermatodea_contig9973:5492..5661Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9973 5493..5661 -
1694079935.6179128-CDS-S-dermatodea_contig9973:5492..56611694079935.6179128-CDS-S-dermatodea_contig9973:5492..5661Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9973 5493..5661 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9973.17896.1

>prot_S-dermatodea_contig9973.17896.1 ID=prot_S-dermatodea_contig9973.17896.1|Name=mRNA_S-dermatodea_contig9973.17896.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=195bp
LQGRRSAERVKRERAAFAAVGLRQLPSGNLLSRSWGLASLSPKLDCITAY
SKMRQQYLMDGVLDPIPLLVVEEGAAPRRRPPSNLVNPLLLVTEKKGVAY
SLHYGAFPLDAFHTDVAWWKLRDESVQDEHGKLAPTVVRRQEPGVLGCRE
LPVAPAATPATQRGIQNAWLGAALEELAQMCGAFLGVTAMPRGSS
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mRNA from alignment at S-dermatodea_contig9973:3762..5661-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9973.17896.1 ID=mRNA_S-dermatodea_contig9973.17896.1|Name=mRNA_S-dermatodea_contig9973.17896.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1900bp|location=Sequence derived from alignment at S-dermatodea_contig9973:3762..5661- (Saccorhiza dermatodea SderLu1190fm monoicous)
TTGCAGGGGAGAAGGTCTGCCGAAAGGGTGAAGCGGGAGCGAGCTGCTTT
CGCGGCCGTAGGGCTTCGACAGCTTCCCTCGGGCAACCTCCTGTCCCGGA
GCTGGGGTCTGGCATCGCTGTCCCCCAAGCTCGACTGCATCACCGCCTAC
TCCAAGATGAGGCAACAATGTAAGAGTTTTTTGCGGGAAGACGCAGAGGG
AATGGATGGCATTGGACTTCGACTTTGAGGAGCAAATATCCAACACGTTG
TTTTCCCGTCATTGTGATCCCGCCCATTGTAGAAGTAGAGTTCTGATTAT
TTATGTTGTCCTTGACTCTTTGCTACAGCATCTGACCACCAGTCGGATCG
AATTAAGCCGATCGGCTATACCTGTGCAATTCAATCAATCAGTCAATCAA
GCATCAAATAAAACATCCGCGCGGAAGTTCGTCTTTCAGACAGGCCTCCC
AATGTTTACCGAAGCTGCGCCCGCGCCCGAATTTCAGCATTACTGACGCG
GTGCTGCTGCTGGTGTTCTCTTGCTCTCGTTTTCTCTACCATCTGTCTCT
CAGACCTCATGGACGGGGTCTTAGACCCGATCCCGCTTCTGGTGGTGGAG
GAAGGGGCTGCTCCTAGACGCAGACCCCCCAGCAACCTCGTCAACCCCCT
CCTGCTCGTCACCGAGAAGAAAGGCGTGGCGTACAGTCTTCACTACGGAG
CTTTCCCGCTCGATGCGTTCCACACAGATGGTACGAGTATCGTGGCGCAA
ATCTTTTATAAGTTAACTTATAGTGGTGGTTGGCTACGGCCACGCCCGTG
AGGTGTGTGTTGGCACAAAATTGCTACCTGTAAAGCTACCTATTAGTATA
AGTGAAACACCTATTAATATGATATTTTTGCATCACGAATTGTATAGAAA
TTCCCCACACGAACTTGTTGGGGGAAATTGGCATCAAAGGTCAACTGTAA
ATCGCCATAAAAAAACGTGCGAAGCGGTAGTAATTGGTAAAATATATTAG
TAACGTTTTTAAGTAGCGATGTTGAGCTCAGTTTCGTGCGGAATTTTCCT
TGTACGATTCGCAAAATGCCGGAAATTTTCTATACAATTTCGTGATGCCA
AAATTCAGCAGTTGCTTCAGAGGGGTCCCCTTGCAACGTGGTAGTAATCT
GGGCCAACGCACAGCCCACGGGCATAGCCGCGGCTACTCACTATGATACA
GTAGTGGTGGATATGTGTGGCAATGTTCAATAGTCAAGCCTCCCCCGAAC
AAAGGTATTCTCTTCTTGCGCACGCTGCGCCAATGTATCGCTGTGCGAGT
TTGCGAGATCTGTCCTGCGTTTGGTTTTAGCTGGCCCTTTAGTTCCAAGG
AATCCAAAAGATAGAGCGGGGGATAAGAATCGGCGTTTTGCCTGTGAAAC
AGGAGTTAGAAGTTTTTTTTTTTTCCGTTCTGCCGTGCTCGCGCCTGATT
GACCAACCGATCTCAGATCCCGTTCCGAGTTATTACCAGGTGCAACCAGT
ATGTTCCGGATTGCACCATTGTTTTCTGTGGCTGGCCGACCTACATCCCC
GTTTCCCTCTCCAATCTTTCAATTGCTCTTTACTTGTCCTACCACACCGT
TTTTTTAGCAAGCCCACATGATTGCCGTTGCCTTGTCCTTGCTTGGCATG
TGTGTGAAAGTGGCCTGGTGGAAGCTGCGTGACGAGAGCGTGCAGGACGA
GCACGGCAAGCTCGCTCCAACGGTAGTCAGGCGCCAGGAACCTGGAGTTC
TTGGCTGCAGGGAACTACCCGTGGCACCCGCGGCAACACCTGCAACCCAG
CGTGGCATACAGAATGCGTGGCTCGGCGCCGCGTTGGAAGAGCTAGCGCA
GATGTGTGGTGCCTTTTTAGGCGTTACGGCCATGCCCAGGGGTTCGTCTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9973:3762..5661-

>mRNA_S-dermatodea_contig9973.17896.1 ID=mRNA_S-dermatodea_contig9973.17896.1|Name=mRNA_S-dermatodea_contig9973.17896.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1170bp|location=Sequence derived from alignment at S-dermatodea_contig9973:3762..5661- (Saccorhiza dermatodea SderLu1190fm monoicous)
TTGCAGGGGAGAAGGTCTGCCGAAAGGGTGAAGCGGGAGCGAGCTGCTTT
CGCGGCCGTAGGGCTTCGACAGCTTCCCTCGGGCAACCTCCTGTCCCGGA
GCTGGGGTCTGGCATCGCTGTCCCCCAAGCTCGACTGCATCACCGCCTAC
TCCAAGATGAGGCAACAATTTGCAGGGGAGAAGGTCTGCCGAAAGGGTGA
AGCGGGAGCGAGCTGCTTTCGCGGCCGTAGGGCTTCGACAGCTTCCCTCG
GGCAACCTCCTGTCCCGGAGCTGGGGTCTGGCATCGCTGTCCCCCAAGCT
CGACTGCATCACCGCCTACTCCAAGATGAGGCAACAATACCTCATGGACG
GGGTCTTAGACCCGATCCCGCTTCTGGTGGTGGAGGAAGGGGCTGCTCCT
AGACGCAGACCCCCCAGCAACCTCGTCAACCCCCTCCTGCTCGTCACCGA
GAAGAAAGGCGTGGCGTACAGTCTTCACTACGGAGCTTTCCCGCTCGATG
CGTTCCACACAGATGACCTCATGGACGGGGTCTTAGACCCGATCCCGCTT
CTGGTGGTGGAGGAAGGGGCTGCTCCTAGACGCAGACCCCCCAGCAACCT
CGTCAACCCCCTCCTGCTCGTCACCGAGAAGAAAGGCGTGGCGTACAGTC
TTCACTACGGAGCTTTCCCGCTCGATGCGTTCCACACAGATGTGGCCTGG
TGGAAGCTGCGTGACGAGAGCGTGCAGGACGAGCACGGCAAGCTCGCTCC
AACGGTAGTCAGGCGCCAGGAACCTGGAGTTCTTGGCTGCAGGGAACTAC
CCGTGGCACCCGCGGCAACACCTGCAACCCAGCGTGGCATACAGAATGCG
TGGCTCGGCGCCGCGTTGGAAGAGCTAGCGCAGATGTGTGGTGCCTTTTT
AGGCGTTACGGCCATGCCCAGGGGTTCGTCTTGGCCTGGTGGAAGCTGCG
TGACGAGAGCGTGCAGGACGAGCACGGCAAGCTCGCTCCAACGGTAGTCA
GGCGCCAGGAACCTGGAGTTCTTGGCTGCAGGGAACTACCCGTGGCACCC
GCGGCAACACCTGCAACCCAGCGTGGCATACAGAATGCGTGGCTCGGCGC
CGCGTTGGAAGAGCTAGCGCAGATGTGTGGTGCCTTTTTAGGCGTTACGG
CCATGCCCAGGGGTTCGTCT
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