mRNA_S-dermatodea_contig9862.17827.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig9862.17827.1 vs. uniprot
Match: A0A843U288_COLES (Uncharacterized protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843U288_COLES) HSP 1 Score: 58.5 bits (140), Expect = 3.850e-7 Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = 1
Query: 10 CLIC-HENLPDVGRGIIIGCGHVFCFSHILTWSKTETKCPVCRRQFMSITKT 162
C IC E V RG++ C H FCF+ I+ WSK E+KCPVC+R+FM+++K+
Sbjct: 315 CGICLSEEHNRVIRGLLDCCAHYFCFACIMEWSKVESKCPVCKRRFMTVSKS 366
BLAST of mRNA_S-dermatodea_contig9862.17827.1 vs. uniprot
Match: A0A8B7CWA2_PHODC (uncharacterized protein LOC103720028 n=1 Tax=Phoenix dactylifera TaxID=42345 RepID=A0A8B7CWA2_PHODC) HSP 1 Score: 57.8 bits (138), Expect = 7.170e-7 Identity = 25/52 (48.08%), Postives = 36/52 (69.23%), Query Frame = 1
Query: 10 CLIC-HENLPDVGRGIIIGCGHVFCFSHILTWSKTETKCPVCRRQFMSITKT 162
C IC E +G++ C H FCF+ I+ WSK E++CPVC+R+FM+ITK+
Sbjct: 366 CGICLSEEQKGTIQGVLNCCAHYFCFACIMEWSKVESRCPVCKRRFMTITKS 417
BLAST of mRNA_S-dermatodea_contig9862.17827.1 vs. uniprot
Match: A0A6I9Q9B0_ELAGV (uncharacterized protein LOC105032814 isoform X2 n=2 Tax=Elaeis guineensis var. tenera TaxID=51953 RepID=A0A6I9Q9B0_ELAGV) HSP 1 Score: 57.4 bits (137), Expect = 9.770e-7 Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 1
Query: 10 CLIC-HENLPDVGRGIIIGCGHVFCFSHILTWSKTETKCPVCRRQFMSITKT 162
C IC E G++ C H FCF+ I+ WSK E++CPVC+R+FM+ITK+
Sbjct: 372 CGICLSEEQKGTIEGVLNCCAHYFCFACIMEWSKVESRCPVCKRRFMTITKS 423
BLAST of mRNA_S-dermatodea_contig9862.17827.1 vs. uniprot
Match: A0A0D9VT38_9ORYZ (Uncharacterized protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9VT38_9ORYZ) HSP 1 Score: 57.4 bits (137), Expect = 9.770e-7 Identity = 26/55 (47.27%), Postives = 37/55 (67.27%), Query Frame = 1
Query: 10 CLIC-HENLPDVGRGIIIGCGHVFCFSHILTWSKTETKCPVCRRQFMSITKTLDE 171
C IC E +G++ C H FCF+ I+ WSK E+KCP+C+R+F +ITK+L E
Sbjct: 410 CGICLSEEQRVTVQGLLDCCSHYFCFACIMQWSKVESKCPLCKRRFTTITKSLKE 464
BLAST of mRNA_S-dermatodea_contig9862.17827.1 vs. uniprot
Match: A0A7I8KL25_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8KL25_SPIIN) HSP 1 Score: 57.0 bits (136), Expect = 1.290e-6 Identity = 23/53 (43.40%), Postives = 37/53 (69.81%), Query Frame = 1
Query: 10 CLIC-HENLPDVGRGIIIGCGHVFCFSHILTWSKTETKCPVCRRQFMSITKTL 165
C IC E + RG++ C H FCF+ I+ WSK E++CPVC+R+F +++K++
Sbjct: 329 CGICLSEEKKEATRGLLDCCSHFFCFACIMEWSKVESRCPVCKRRFKTVSKSV 381
BLAST of mRNA_S-dermatodea_contig9862.17827.1 vs. uniprot
Match: A0A6P5S5Q7_PRUAV (uncharacterized protein LOC110753353 isoform X1 n=10 Tax=Prunus TaxID=3754 RepID=A0A6P5S5Q7_PRUAV) HSP 1 Score: 56.6 bits (135), Expect = 1.790e-6 Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 1
Query: 10 CLICHENLPDVGRGIIIGCGHVFCFSHILTWSKTETKCPVCRRQFMSI 153
C IC+ N RG I C H FCF I+ WSKTE++CP+CR +F +I
Sbjct: 47 CAICYSNDEKAVRGEIDCCDHYFCFYCIMEWSKTESRCPLCRSRFTTI 94
BLAST of mRNA_S-dermatodea_contig9862.17827.1 vs. uniprot
Match: A0A2H9ZYQ4_9ASPA (Methyl-CpG-binding domain-containing protein 9 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2H9ZYQ4_9ASPA) HSP 1 Score: 56.6 bits (135), Expect = 1.800e-6 Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 1
Query: 10 CLIC-HENLPDVGRGIIIGCGHVFCFSHILTWSKTETKCPVCRRQFMSITKT 162
C IC E +GI+ C H FCF+ I+ WSK E++CP+C+R+F +ITKT
Sbjct: 352 CGICLSEEQKGTVQGILNCCSHYFCFACIMEWSKVESRCPLCKRRFSTITKT 403
BLAST of mRNA_S-dermatodea_contig9862.17827.1 vs. uniprot
Match: A0A835RP86_VANPL (Uncharacterized protein n=2 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835RP86_VANPL) HSP 1 Score: 56.6 bits (135), Expect = 1.800e-6 Identity = 25/52 (48.08%), Postives = 36/52 (69.23%), Query Frame = 1
Query: 10 CLIC-HENLPDVGRGIIIGCGHVFCFSHILTWSKTETKCPVCRRQFMSITKT 162
C IC E +GI+ C H FCFS I+ WSK E++CP+C+R+F++ITK+
Sbjct: 365 CGICLSEEQKGTIQGILNCCSHYFCFSCIMEWSKVESRCPLCKRRFVTITKS 416
BLAST of mRNA_S-dermatodea_contig9862.17827.1 vs. uniprot
Match: A0A7I8IWM2_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8IWM2_SPIIN) HSP 1 Score: 56.2 bits (134), Expect = 2.280e-6 Identity = 23/53 (43.40%), Postives = 37/53 (69.81%), Query Frame = 1
Query: 10 CLIC-HENLPDVGRGIIIGCGHVFCFSHILTWSKTETKCPVCRRQFMSITKTL 165
C IC E + RG++ C H FCF+ I+ WSK E++CPVC+R+F +++K++
Sbjct: 183 CGICLSEEKKEAIRGLLDCCSHFFCFACIMEWSKVESRCPVCKRRFKTVSKSV 235
BLAST of mRNA_S-dermatodea_contig9862.17827.1 vs. uniprot
Match: A0A5A7QKF1_STRAF (PHD and RING finger domain-containing protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7QKF1_STRAF) HSP 1 Score: 56.2 bits (134), Expect = 2.410e-6 Identity = 24/52 (46.15%), Postives = 36/52 (69.23%), Query Frame = 1
Query: 10 CLIC-HENLPDVGRGIIIGCGHVFCFSHILTWSKTETKCPVCRRQFMSITKT 162
C IC E RGI+ C H FCF+ I+ WSK E++CP+C+++FM+I++T
Sbjct: 382 CGICLSEEAKRTVRGILNCCSHYFCFACIMEWSKVESRCPLCKQRFMTISRT 433 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9862.17827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig9862.17827.1 >prot_S-dermatodea_contig9862.17827.1 ID=prot_S-dermatodea_contig9862.17827.1|Name=mRNA_S-dermatodea_contig9862.17827.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=150bp EDPCLICHENLPDVGRGIIIGCGHVFCFSHILTWSKTETKCPVCRRQFMSback to top mRNA from alignment at S-dermatodea_contig9862:473..4510- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig9862.17827.1 ID=mRNA_S-dermatodea_contig9862.17827.1|Name=mRNA_S-dermatodea_contig9862.17827.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4038bp|location=Sequence derived from alignment at S-dermatodea_contig9862:473..4510- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig9862:473..4510- >mRNA_S-dermatodea_contig9862.17827.1 ID=mRNA_S-dermatodea_contig9862.17827.1|Name=mRNA_S-dermatodea_contig9862.17827.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=900bp|location=Sequence derived from alignment at S-dermatodea_contig9862:473..4510- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |