mRNA_S-dermatodea_contig9834.17808.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9834.17808.1
Unique NamemRNA_S-dermatodea_contig9834.17808.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9834.17808.1 vs. uniprot
Match: D8LN83_ECTSI (Hist_deacetyl domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN83_ECTSI)

HSP 1 Score: 221 bits (562), Expect = 1.850e-64
Identity = 110/127 (86.61%), Postives = 117/127 (92.13%), Query Frame = 3 
Query:    3 CLRPMTTRLPLPPSWPPVMKTVYKPWLDDEDAENVFFGSVSLQDKDLFYPASGTEEEKFDDNK-NIVNVSLSALGPTPGEETKKRALTKTKMTEYVNKAGAEFKAKCQRTLLARLKEFSPDLLIMSA 380
            CLRPMTTRLPLPPSWPP+ KTVYKPWLDD DA+NVFFGSVSLQDKDLFYPASGTEEE+F+DN  NIVNVSLS LGPTPG+E KKRALTKTK+TEY NKA  EFK KCQRTLLARLKEFSPDLLI+SA
Sbjct:  641 CLRPMTTRLPLPPSWPPMTKTVYKPWLDDGDADNVFFGSVSLQDKDLFYPASGTEEERFNDNDANIVNVSLSPLGPTPGDEPKKRALTKTKVTEYTNKACNEFKQKCQRTLLARLKEFSPDLLIISA 767
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BLAST of mRNA_S-dermatodea_contig9834.17808.1 vs. uniprot
Match: A0A6H5JJZ7_9PHAE (Hist_deacetyl domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJZ7_9PHAE)

HSP 1 Score: 218 bits (554), Expect = 1.870e-63
Identity = 108/127 (85.04%), Postives = 116/127 (91.34%), Query Frame = 3 
Query:    3 CLRPMTTRLPLPPSWPPVMKTVYKPWLDDEDAENVFFGSVSLQDKDLFYPASGTEEEKFDDNK-NIVNVSLSALGPTPGEETKKRALTKTKMTEYVNKAGAEFKAKCQRTLLARLKEFSPDLLIMSA 380
            CLRPM TRLPLPPSWPP+ KTVYKPWLDD DA+NVFFGSVSLQDKDLFYPASGTE+E+F+DN  NIVNVSLS LGPTPG+E KKRALTKTK+TEY NKA  EFK KCQRTLLARLKEFSPDLLI+SA
Sbjct:  581 CLRPMNTRLPLPPSWPPMTKTVYKPWLDDGDADNVFFGSVSLQDKDLFYPASGTEDERFNDNDDNIVNVSLSPLGPTPGDEPKKRALTKTKVTEYTNKACNEFKQKCQRTLLARLKEFSPDLLIISA 707
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BLAST of mRNA_S-dermatodea_contig9834.17808.1 vs. uniprot
Match: A0A8J2T2D3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T2D3_9STRA)

HSP 1 Score: 100 bits (248), Expect = 4.430e-22
Identity = 54/126 (42.86%), Postives = 75/126 (59.52%), Query Frame = 3 
Query:    6 LRPMTTRLPLPPSWPPVMKTVYKPWLDDEDAENVFFGSVSLQD-KDLFYPASGTEEEKFDDNKNIVNVSLSALGPTPGEETKKRALTKTKMTEYVNKAGAEFKAKCQRTLLARLKEFSPDLLIMSA 380
            L+P   + PLP SWP   + V+KPWLD+ D + VFFGSV L D K  FYP  G  +E  D    IVNV L+A+GP PG+   +++LT ++  +  ++AGA  +      LL  L+ F  DL+I SA
Sbjct:  318 LKPHKVQKPLPDSWPAEYREVHKPWLDESDGDEVFFGSVHLWDAKGAFYPGGGGPQESSD---TIVNVPLAAVGPKPGDVRARQSLTASQRAKLCDEAGANLRRDVSAQLLPALQRFDADLVIFSA 440
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BLAST of mRNA_S-dermatodea_contig9834.17808.1 vs. uniprot
Match: A0A836CER0_9STRA (Histone deacetylase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CER0_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 6.390e-14
Identity = 40/86 (46.51%), Postives = 50/86 (58.14%), Query Frame = 3 
Query:    6 LRPMTTRLPLPPSWPPVMKTVYKPWLDDEDAENVFFGSVSLQDKDLFYPASGTEEEKFDDNK-------NIVNVSLSALGPT-PGE 239
            LRP   RLPLPPSWPP     YKPWLD++DAENV F S++L     FYPASG       D         +I+N +L+ +G   PG+
Sbjct:  454 LRPRRRRLPLPPSWPPAFAATYKPWLDEDDAENVMFASINLVQGHDFYPASGHASAGGGDGDGDELHGGHIINAALAPVGGVAPGD 539
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BLAST of mRNA_S-dermatodea_contig9834.17808.1 vs. uniprot
Match: A0A7S1HP25_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HP25_HEMAN)

HSP 1 Score: 51.2 bits (121), Expect = 6.050e-5
Identity = 35/105 (33.33%), Postives = 55/105 (52.38%), Query Frame = 3 
Query:   69 YKPWLDDEDAENVFFGSVSLQDKDLFYPASGTEEE-KFDDNKNIVNVSLSALGPTPGEETKKRALTKTKMTEYVNKAGAEFKAKCQRTLLARLKEFSPDLLIMSA 380
            YKPWLD+ DAENVFF S+ L  +D FYP    +E  +F + +  +N   ++  P                T+ V ++   F++     L+ RL+ F PDL+++SA
Sbjct:  189 YKPWLDETDAENVFFASLHLSAED-FYPRLAVKECCRFGEPEFGLNHEGASDDPAYPNVLS----IPMHKTQTVEESSRLFRSLVDSRLINRLRSFRPDLIMISA 288
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9834.17808.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LN83_ECTSI1.850e-6486.61Hist_deacetyl domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JJZ7_9PHAE1.870e-6385.04Hist_deacetyl domain-containing protein n=1 Tax=Ec... [more]
A0A8J2T2D3_9STRA4.430e-2242.86Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A836CER0_9STRA6.390e-1446.51Histone deacetylase domain-containing protein n=1 ... [more]
A0A7S1HP25_HEMAN6.050e-533.33Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9834contigS-dermatodea_contig9834:3739..7250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score211.5
Seed ortholog evalue2.3e-52
Seed eggNOG ortholog2880.D8LN83
EggNOG free text desc.NAD-dependent histone deacetylase activity (H3-K14 specific)
EggNOG OGsCOG0123@1,KOG1343@2759
Ec32 ortholog descriptionHistone deacetylase
Ec32 orthologEc-05_003890.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size382
Cds size366
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9834.17808.1prot_S-dermatodea_contig9834.17808.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9834 3753..7250 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925434.0064566-UTR-S-dermatodea_contig9834:3738..37521622925434.0064566-UTR-S-dermatodea_contig9834:3738..3752Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9834 3739..3752 +
1694079930.6695375-UTR-S-dermatodea_contig9834:3738..37521694079930.6695375-UTR-S-dermatodea_contig9834:3738..3752Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9834 3739..3752 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925434.015973-CDS-S-dermatodea_contig9834:3752..38971622925434.015973-CDS-S-dermatodea_contig9834:3752..3897Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9834 3753..3897 +
1694079930.6834912-CDS-S-dermatodea_contig9834:3752..38971694079930.6834912-CDS-S-dermatodea_contig9834:3752..3897Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9834 3753..3897 +
1622925434.0270796-CDS-S-dermatodea_contig9834:5110..51951622925434.0270796-CDS-S-dermatodea_contig9834:5110..5195Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9834 5111..5195 +
1694079930.7008805-CDS-S-dermatodea_contig9834:5110..51951694079930.7008805-CDS-S-dermatodea_contig9834:5110..5195Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9834 5111..5195 +
1622925434.0390866-CDS-S-dermatodea_contig9834:6145..62271622925434.0390866-CDS-S-dermatodea_contig9834:6145..6227Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9834 6146..6227 +
1694079930.7165751-CDS-S-dermatodea_contig9834:6145..62271694079930.7165751-CDS-S-dermatodea_contig9834:6145..6227Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9834 6146..6227 +
1622925434.0523767-CDS-S-dermatodea_contig9834:7196..72501622925434.0523767-CDS-S-dermatodea_contig9834:7196..7250Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9834 7197..7250 +
1694079930.7283735-CDS-S-dermatodea_contig9834:7196..72501694079930.7283735-CDS-S-dermatodea_contig9834:7196..7250Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9834 7197..7250 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9834.17808.1

>prot_S-dermatodea_contig9834.17808.1 ID=prot_S-dermatodea_contig9834.17808.1|Name=mRNA_S-dermatodea_contig9834.17808.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=122bp
MTTRLPLPPSWPPVMKTVYKPWLDDEDAENVFFGSVSLQDKDLFYPASGT
EEEKFDDNKNIVNVSLSALGPTPGEETKKRALTKTKMTEYVNKAGAEFKA
KCQRTLLARLKEFSPDLLIMSA
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mRNA from alignment at S-dermatodea_contig9834:3739..7250+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9834.17808.1 ID=mRNA_S-dermatodea_contig9834.17808.1|Name=mRNA_S-dermatodea_contig9834.17808.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3512bp|location=Sequence derived from alignment at S-dermatodea_contig9834:3739..7250+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTGTCTGCGGCCGATGACCACGCGGCTCCCGCTGCCTCCCAGCTGGCCC
CCCGTCATGAAGACGGTTTACAAGCCTTGGCTGGATGACGAGGATGCCGA
GAACGTATTTTTCGGTTCGGTCAGCCTTCAGGACAAGGACCTCTTCTACC
CCGCCTCGGGTAACGGTTTTACGGTTACACTAAAAACTAACCGAACGTTC
TCCGAACCATTCTCTGAAACTAAAAGAAAATACTCTGTACAAGTCCTTTT
TTGTTTTTTTTTAGCACACATATGATAGGCTTGCTTTTCCGAGGTAGGTC
CGTCTGTGGTCACAAGGGATCACCCCACCTCTCGTAACCCTGGTTCTCAC
CTTTGATTTTTATCGCTCATGGGGTTCGGCACTCCCGCAGCTCGCCGATT
TCTCGGATTTCATGTACATGCAACTATTAAAATCGATACTCCCGCTCTTA
CGAAATCCAGATTCCAATCCTTGAATCCTCCCCCTTTCTTTTCTCTTCTT
TCTTTTTGTAAATCGATGACGCCCGGAGACCGTCGCCTTCGTGGTGTTGA
AAACCCAAGCTGTATCGTGCATTGTAGGGTATGTTTGTGGTTACATAGAG
TTACGACGTTACATGTGCATGTGCAGGGCCTGTTTTTTGTGGTCACATAC
AGTTCCGCCGGCCGTTAGAGCTCTGCATATGTAGGGCTTGATTGTGGTTA
CATACAGTTTGACCGTTACATGTGTAAGGCAGTTACCCTTGTAGGGCATG
TTTGTGGTTACAAACAGTTACAAACAGTTACACCGTTACACATGTAGGGC
ATGTTTGTGGCTAATACAGTTACACCGTTACATGTGTAGGGCATGTTTGC
GGTTACACAATTAGACCGTTACATGTGTAGGGCATGTTTGTGGGTACATA
GAGTTACACCGTTACACTTGTAGGGCATGTTTGTGGCTAATACAGTTACA
CCGTTACATGTGTAGGGCATGTTTGTGGCTAAATGCAGTAACACCGTTAC
ACATGTAGGGCATGTTTGTGGCTTAATACAGTTACACCGTTCCATATGTA
GGGCATGTTTGCGGTTACAAACACTTACACCGTTACACATGCAGGGCATG
TTTGTGGCTAATGTGTAAGGCATGTTTGTGGTTACATAGAGTTACACCGT
TGCATGTGTAGGCCATGCTTGCGGGTACATAGAGTTACACAGATACATTT
CTAACTTGTGTAGCGTGTCCTAAGTCGAAATAACCTGTTAACTGTTAACA
CTCTTGACAGAGTGTAGAGTGTAACGTGGCCACAGCTAGCTGTGAAAGGT
TGCCAAGCTTGCCCACCCTGTGCAGCTACTATTGACTGTAATAATGCCGC
GCCACGCTAACATTGATGGCAGGCACGGAGGAAGAAAAGTTCGACGACAA
CAAGAACATCGTGAACGTGTCGCTTTCAGCCTTAGGCCCGACACCCGGAG
AGGAAACGTGAGTTTCGACAAAACACAGAGCACGGCCTCAAATCCTGCGG
ATATAATTGCCTCCTCCCCCCCCCCGCTCCCGCCGGAAGCAGGGGAATTT
TGTCTTAGTGCAAGCATCAATCGGCCAAATATAATATTTCGACAGATTAA
CCAGCTTCAGATCGGGCAAACGAACGAAGACACACGGTCTACGTCTCCCG
CGACCCGCGGCAAACACGAACGTGTAGCAACCTCATGGCGGGATTTGACA
TTGTGCCCCCCCCCCTATTTGTTAGATCTGGCTACTGCTCTGCTTTATTG
GTCCAGCTGGAACATGTCGCTCATGTATATATATACGATTCTACGTCCAT
ACAACGGGACGTGCCTGTTGTCATCTATTGATGTAATCGTGCAGTAGTAT
TTCATGTGATGTTTTTAAACTGTTTCACGGAGGTACACTATAATCAAGTA
ATATCAGGGAGGTACACTATAATGAAGTAATCAGGACCAAATATCATGAC
CATGGATAAAATACCCAACTATTCCGACCATGAATACTGTGTACCCAAAT
AACAATAATCTCACGAAAAACTAAAAAAAACGCACGAGATATGGCCATAT
GCAAGAACACCGACCTTGAAATCTCGACATTTCCAGCCTATTTAGATATT
TCTAGGGTGAGACTTGTGGCAAATTTGGACCTGTTAACTCTAGTCCCCCG
TAAAATACTGTGGTTTTTTTATTGACATTTCAGGCCGGAAGGCTGCAGAA
GTATATGGTCTTGTGAGTCGTGAGGCCAGACTAATGATAAATGAATGCAC
ATGGTGTTGTTTGCTGTGTTGAGTAAACTTTCCTGGACGTTTGGTTCTCA
TTATTATACTATTAATACTATACCACTGTGTATGTGCGCCTCCGTCATGT
TATAGTATCGTTCTTCTTCTTCTTCTCCTTCTTGTTCCTTACTCGCAAAT
TTTCCAGGAAAAAGCGGGCTCTGACGAAGACGAAGATGACGGAGTACGTG
AACAAGGCAGGGGCGGAGTTCAAGGCGAAGTGCCAAAGGGTAATTTGTAA
TTTACGTTTTTACGATTTGTTCTCTTTTGTGTGTGTCTTTTTGTGCGTGT
GTTTGCGCCGAGTGTGTGCGGCTCTCACGTTTTTTTTTTTGTTTATCGCG
AAAACTTACCGCCGACCGGCCCACCAATGCTTGCCGATCCCGTTCTCTCG
TGCGTGGTCATGTGAGAAATCGAAAGATGGATAGGTCGTTCTCCAATATG
ATAGGTCGTAGAGTAGCCGAAAAGAGAGCGGCACCACCGCCGTGCATGCA
CAAGCTACTATTAATACTATACTGCAACCGTGGTAGACTTTTTCATCACT
TTTACACCGCGGCTACTGTACTGTATATGCGGCGAGGAGAATCACATGAC
AGTCACCACCGTTCGGGTACGACATGAGTCACCACCGTTCGGGTACAATA
GACGTCACCACCGTTCGGGTACAGCATAAGTCACCACCGTTCGGGTACAT
CATTAGTCACCACCGTTTGGGTACAACATAAACCACCACCGTTCGGGTAC
AACATAAGTCACCACCGTTCGGGTACAATATACGTCACCACCGTTCGGGT
ACAGCATAAGTCACCACCGTTCGGGTACAGCATAAGTCACCACCGTTCGG
GTACAGCATTAGTCACCACCGTTTGGGTACAACATAAGTCACCACCGTTC
GGGTACAATATACGTCACCACCGTTCGGGTACAACATAAGTCACCACCGT
TCAGGTACAGCATGGGTCACCACCATTCGGGTACAACACAAGTCACCACC
GTTCAGGTACAACATAAGCCACCACCATCCGGGTACAGTACTGCCGTTGT
ACCTGTTCGATGGCCTCAACCCGAAAACAGGATCAGTCCTAAAATAGGTA
TTGGAGCGTTGTCTGATGTACAAGTATGTTTTTCACGTTTCCCCCCCGAA
AATGTTTGTTTGTTGTTTTCAACCCCGACGCTCTCGCGCGACTCGTGAAC
TCCGGTAGACTCTGCTGGCCCGGCTCAAGGAGTTCAGCCCGGACCTGCTT
ATTATGTCCGCA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9834:3739..7250+

>mRNA_S-dermatodea_contig9834.17808.1 ID=mRNA_S-dermatodea_contig9834.17808.1|Name=mRNA_S-dermatodea_contig9834.17808.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at S-dermatodea_contig9834:3739..7250+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACCACGCGGCTCCCGCTGCCTCCCAGCTGGCCCCCCGTCATGAAGAC
GGTTTACAAGCCTTGGCTGGATGACGAGGATGCCGAGAACGTATTTTTCG
GTTCGGTCAGCCTTCAGGACAAGGACCTCTTCTACCCCGCCTCGGATGAC
CACGCGGCTCCCGCTGCCTCCCAGCTGGCCCCCCGTCATGAAGACGGTTT
ACAAGCCTTGGCTGGATGACGAGGATGCCGAGAACGTATTTTTCGGTTCG
GTCAGCCTTCAGGACAAGGACCTCTTCTACCCCGCCTCGGGCACGGAGGA
AGAAAAGTTCGACGACAACAAGAACATCGTGAACGTGTCGCTTTCAGCCT
TAGGCCCGACACCCGGAGAGGAAACGCACGGAGGAAGAAAAGTTCGACGA
CAACAAGAACATCGTGAACGTGTCGCTTTCAGCCTTAGGCCCGACACCCG
GAGAGGAAACGAAAAAGCGGGCTCTGACGAAGACGAAGATGACGGAGTAC
GTGAACAAGGCAGGGGCGGAGTTCAAGGCGAAGTGCCAAAGGGAAAAAGC
GGGCTCTGACGAAGACGAAGATGACGGAGTACGTGAACAAGGCAGGGGCG
GAGTTCAAGGCGAAGTGCCAAAGGACTCTGCTGGCCCGGCTCAAGGAGTT
CAGCCCGGACCTGCTTATTATGTCCGCAACTCTGCTGGCCCGGCTCAAGG
AGTTCAGCCCGGACCTGCTTATTATGTCCGCA
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