mRNA_S-dermatodea_contig983.17806.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig983.17806.1 vs. uniprot
Match: D7FM25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM25_ECTSI) HSP 1 Score: 194 bits (492), Expect = 9.020e-50 Identity = 173/489 (35.38%), Postives = 234/489 (47.85%), Query Frame = 1
Query: 502 QVAVADNGRLGWPDVLAMASDLELTPQLVDIGALKIAVEQVSAAPHRLPIAINGSTPNGSSCDIIGRERRVWPGISYPQFVEVLSLLATAAASRLRSLYPDVAGVEPCIRV--QRASNVEQNAIGEATGSGVDLSASRSGPSAFDKDPPARVPGGVGGEKVKNRANLGGVARKRAINVRAVLRMGARCVRSIT-SDGDSSALSVAKAQEARNRDYDVGAFKALFHHARGARE-KRDPPTRGR-------SRAEISRLVPNSADGREAEPCAARRPPSPDGY-----SQASDDGSSDDLAEWPGCHAQDVRRADGDGQRSSCGHGGEAFAESKDGAHVVATAAEPGRIVDEIAGRLSDFEKDIFPSGYGQRATDDQRSPSDAS-PSLHQRR---IEDQNTKVSRAGGVSGPLARLVVIKEMQPVPEHAPESARHLLEVALDHQQAGRYALALDTLDKAGITWGSLLGPQQSRSFPPRGGGSIWGLNAADE 1908
Q A++ R+ W LA +SDL+L P+L+ +GALK AVEQ + R A S G+SYPQFVEVLSL+A AA RLR LYP+VAG EP V R N N +T G GP A + GE N +L +++A +VRA +R+ + RS+ + G A V + E YDVGAFKALFHHA A E KR TR + S + +S + E + R P +G S+ S+ G +DD G + + D +G + ++SK V + E R+++EI R+SD E + P + T + S+ P R +E++ A G G ARLVVIKE+QPVPEHAPE A HLL++ALDH QAGRYALAL+TL+K + W L G + P G GL+A+DE
Sbjct: 35 QTAISKARRIHWAGFLAASSDLQLVPRLIGLGALKAAVEQGGPSSDRNAAATKRSAA----------------GMSYPQFVEVLSLMAIPAAGRLRRLYPNVAGPEPPAAVVGPRHRNTPTN----STSDGTTSRGGGGGPLALEITSEEAGRRDEAGEGSGNERSL---FQRKARHVRAAMRLRMKKGRSVVVAPGTPDAPPVDEQPEQVPPSYDVGAFKALFHHAETAHEEKRSGATRPQGFHCRNVSSSSLSPPACRDTVTTKGEGASERSSPRSNGSCIDEGSEPSEGGGNDDGGRGEG---RAISAVDYEGTAAE-------VSDSKTFPQKVFSPQESARVLEEIRDRVSDLEGKVLPHETSEVETGADGTGSETFLPRRDDARAVVVEEEPGPEPLAPGAGGGFARLVVIKELQPVPEHAPEDASHLLDLALDHHQAGRYALALETLEKGVLMWEELQGGGEGDHEPANPEG---GLDASDE 487
BLAST of mRNA_S-dermatodea_contig983.17806.1 vs. uniprot
Match: A0A6H5L0D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0D4_9PHAE) HSP 1 Score: 175 bits (443), Expect = 3.060e-43 Identity = 166/491 (33.81%), Postives = 229/491 (46.64%), Query Frame = 1
Query: 502 QVAVADNGRLGWPDVLAMASDLELTPQLVDIGALKIAVEQVSAAPHRLPIAINGSTPNGSSCDIIGRERRVWPGISYPQFVEVLSLLATAAASRLRSLYPDVAGVEPCIRV--QRASNVEQNAIGEATGSGVDLSASRSGPSAFD---KDPPARVPGGVGGEKVKNRANLGGVARKRAINVRAVLRMGARCVRSIT-SDGDSSALSVAKAQEARNRDYDVGAFKALFHHARGA-REKRDPPTRGRS----RAEISRLVPNSA-DGREAEPCAARRPPSPDGYSQASDDGSSDDLAEWPGCHAQDVRRADGDGQRSSCGHGGEAFAESKDGAHVVATAAEP---GRIVDEIAGRLSDFEKDIFPSGYGQRATDDQRSPSDASPSLHQRR-------IEDQNTKVSRAGGVSGPLARLVVIKEMQPVPEHAPESARHLLEVALDHQQAGRYALALDTLDKAGITWGSLLGPQQSRSFPPRGGGSIWGLNAADE 1908
Q A++ R+ W LA +SDL+L P+L+ + ALK AVEQ + R A S G+SYPQFVEVLSL+A +AA RLR LYPDVAG EP V R N N + T S GP A + ++ R G G + ++ ++A +VRA +R+ + RS+ + G A V + E YDVGA KALFHHA A +E+R R + S L P + D + A SP S +D+ S P + R G+G+ S A+ D + A P R+++E+ R+SD E + P + T + + S + RR +E++ A G G ARLVVIKE+QPVPEHAP+ A LL++ LDH QAGRYALAL+TL+K + W L G + P G GL+A+DE
Sbjct: 34 QTAISKARRIHWTGFLAASSDLQLVPRLIGLDALKAAVEQGGPSSDRNAAATKPSAA----------------GMSYPQFVEVLSLVAISAAGRLRRLYPDVAGPEPPAAVGDPRHRNTPTNFTSDGTAS---RGGGGGGPLALEMTSEEAGRRDEAGEGSDNARSPFQ------RKARHVRAAMRLRMKKGRSVVDAPGIPDAPPVDEQPEQVPPYYDVGALKALFHHAETAHKEQRSGTVRPQGFHCHNVSSSSLSPPACRDTMTTKGEGASERSSPRSNSSCTDEKSE------PSEGGGNYDRGRGEGRAISAVDYEGTAAKGPDSNIFLQKAFSPQESARVLEELRDRVSDLEAKVLPHETSEVETG---ANGEGSETFLPRRDDARAVVVEEEPGPEPLAPGAGGGFARLVVIKELQPVPEHAPQDASQLLDLTLDHHQAGRYALALETLEKGALMWEELQGGGEGDHEPANPEG---GLDASDE 487 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig983.17806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig983.17806.1 >prot_S-dermatodea_contig983.17806.1 ID=prot_S-dermatodea_contig983.17806.1|Name=mRNA_S-dermatodea_contig983.17806.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=918bp MTLENIQEVWVQQASQGGDKDGGETVEEEEEEDNSHGLRRCQQGQATTTTback to top mRNA from alignment at S-dermatodea_contig983:10842..21580+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig983.17806.1 ID=mRNA_S-dermatodea_contig983.17806.1|Name=mRNA_S-dermatodea_contig983.17806.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=10739bp|location=Sequence derived from alignment at S-dermatodea_contig983:10842..21580+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig983:10842..21580+ >mRNA_S-dermatodea_contig983.17806.1 ID=mRNA_S-dermatodea_contig983.17806.1|Name=mRNA_S-dermatodea_contig983.17806.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=5508bp|location=Sequence derived from alignment at S-dermatodea_contig983:10842..21580+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |