mRNA_S-dermatodea_contig98152.17791.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig98152.17791.1
Unique NamemRNA_S-dermatodea_contig98152.17791.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig98152.17791.1 vs. uniprot
Match: D7G389_ECTSI (Ras-related protein Rab n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G389_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 1.870e-18
Identity = 39/41 (95.12%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 RYVHDFFSGHHKTTVGVDFALKQLVVNGTTVKLQLWDIAGQ 123
            RYVHDFFSGHHKTTVGVDFALKQLVV  TTVKLQLWDIAGQ
Sbjct:   98 RYVHDFFSGHHKTTVGVDFALKQLVVGDTTVKLQLWDIAGQ 138
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BLAST of mRNA_S-dermatodea_contig98152.17791.1 vs. uniprot
Match: A0A6V1S8I5_HETAK (Ras-related protein Rab n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S8I5_HETAK)

HSP 1 Score: 76.3 bits (186), Expect = 5.440e-16
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 RYVHDFFSGHHKTTVGVDFALKQLVVNGTTVKLQLWDIAGQ 123
            RYVH+FFS HHKTTVGVDFALK L VNGT VK+QLWDIAGQ
Sbjct:   28 RYVHNFFSDHHKTTVGVDFALKALNVNGTEVKMQLWDIAGQ 68
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BLAST of mRNA_S-dermatodea_contig98152.17791.1 vs. uniprot
Match: A0A7S2V4T6_9STRA (Ras-related protein Rab n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4T6_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.040e-15
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 RYVHDFFSGHHKTTVGVDFALKQLVVNGTTVKLQLWDIAGQ 123
            RYVH+FFS HHKTTVGVDFALKQL V GT V+LQLWDIAGQ
Sbjct:   28 RYVHNFFSTHHKTTVGVDFALKQLHVRGTDVRLQLWDIAGQ 68
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BLAST of mRNA_S-dermatodea_contig98152.17791.1 vs. uniprot
Match: K3WGR3_GLOUD (Ras-related protein Rab n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WGR3_GLOUD)

HSP 1 Score: 75.1 bits (183), Expect = 1.770e-15
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 RYVHDFFSGHHKTTVGVDFALKQLVVNGTTVKLQLWDIAGQ 123
            RYVHD FS HH+TT+GVDFALK + VNGTTV+LQLWDIAGQ
Sbjct:   32 RYVHDAFSEHHRTTIGVDFALKAVTVNGTTVRLQLWDIAGQ 72
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BLAST of mRNA_S-dermatodea_contig98152.17791.1 vs. uniprot
Match: H3HAQ4_PHYRM (Ras-related protein Rab n=17 Tax=Peronosporaceae TaxID=4777 RepID=H3HAQ4_PHYRM)

HSP 1 Score: 75.1 bits (183), Expect = 1.830e-15
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 RYVHDFFSGHHKTTVGVDFALKQLVVNGTTVKLQLWDIAGQ 123
            RYVHD FS HH+TT+GVDFALK + VNGTTV+LQLWDIAGQ
Sbjct:   32 RYVHDAFSEHHRTTIGVDFALKAVTVNGTTVRLQLWDIAGQ 72
[Close]
BLAST of mRNA_S-dermatodea_contig98152.17791.1 vs. uniprot
Match: A0A8K1C4T0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4T0_PYTOL)

HSP 1 Score: 73.9 bits (180), Expect = 5.070e-15
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 RYVHDFFSGHHKTTVGVDFALKQLVVNGTTVKLQLWDIAGQ 123
            RYVHD F+ HH+TT+GVDFALK + VNGTTV+LQLWDIAGQ
Sbjct:   32 RYVHDAFTEHHRTTIGVDFALKAVTVNGTTVRLQLWDIAGQ 72
[Close]
BLAST of mRNA_S-dermatodea_contig98152.17791.1 vs. uniprot
Match: W2QJV6_PHYPN (Ras-related protein Rab n=3 Tax=Peronosporaceae TaxID=4777 RepID=W2QJV6_PHYPN)

HSP 1 Score: 73.2 bits (178), Expect = 9.990e-15
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 RYVHDFFSGHHKTTVGVDFALKQLVVNGTTVKLQLWDIAGQ 123
            RYVHD FS HH+TT+GVDFALK + V+GTTV+LQLWDIAGQ
Sbjct:   32 RYVHDAFSEHHRTTIGVDFALKAVTVSGTTVRLQLWDIAGQ 72
[Close]
BLAST of mRNA_S-dermatodea_contig98152.17791.1 vs. uniprot
Match: A0A2D4BS33_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BS33_PYTIN)

HSP 1 Score: 75.1 bits (183), Expect = 1.020e-14
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 RYVHDFFSGHHKTTVGVDFALKQLVVNGTTVKLQLWDIAGQ 123
            RYVHD FS HH+TT+GVDFALK + VNGTTV+LQLWDIAGQ
Sbjct:   33 RYVHDAFSEHHRTTIGVDFALKAVTVNGTTVRLQLWDIAGQ 73
[Close]
BLAST of mRNA_S-dermatodea_contig98152.17791.1 vs. uniprot
Match: A0A1V9YUT9_9STRA (Ras-related protein Rab n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YUT9_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.380e-14
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 RYVHDFFSGHHKTTVGVDFALKQLVVNGTTVKLQLWDIAGQ 123
            RYVH+ FS HHKTT+GVDFALK + VNGTT+++QLWDIAGQ
Sbjct:   33 RYVHNVFSDHHKTTIGVDFALKPVTVNGTTLRVQLWDIAGQ 73
[Close]
BLAST of mRNA_S-dermatodea_contig98152.17791.1 vs. uniprot
Match: A0A7S2APD4_9STRA (Ras-related protein Rab n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2APD4_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.710e-14
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    1 RYVHDFFSGHHKTTVGVDFALKQLVVNGTTVKLQLWDIAGQ 123
            RYVH+FFS HH+TTVGVDFALKQL V  T V+LQLWDIAGQ
Sbjct:   46 RYVHNFFSNHHRTTVGVDFALKQLQVYNTVVRLQLWDIAGQ 86
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig98152.17791.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G389_ECTSI1.870e-1895.12Ras-related protein Rab n=1 Tax=Ectocarpus silicul... [more]
A0A6V1S8I5_HETAK5.440e-1685.37Ras-related protein Rab n=1 Tax=Heterosigma akashi... [more]
A0A7S2V4T6_9STRA1.040e-1585.37Ras-related protein Rab n=1 Tax=Fibrocapsa japonic... [more]
K3WGR3_GLOUD1.770e-1580.49Ras-related protein Rab n=2 Tax=Pythiaceae TaxID=4... [more]
H3HAQ4_PHYRM1.830e-1580.49Ras-related protein Rab n=17 Tax=Peronosporaceae T... [more]
A0A8K1C4T0_PYTOL5.070e-1578.05Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W2QJV6_PHYPN9.990e-1578.05Ras-related protein Rab n=3 Tax=Peronosporaceae Ta... [more]
A0A2D4BS33_PYTIN1.020e-1480.49Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A1V9YUT9_9STRA1.380e-1475.61Ras-related protein Rab n=1 Tax=Thraustotheca clav... [more]
A0A7S2APD4_9STRA1.710e-1480.49Ras-related protein Rab n=1 Tax=Dictyocha speculum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig98152contigS-dermatodea_contig98152:279..401 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.0
Seed ortholog evalue1.8e-14
Seed eggNOG ortholog2880.D7G389
Preferred nameRAB32
KEGG koko:K07918,ko:K07923,ko:K07976
GOsGO:0000166,GO:0000323,GO:0001882,GO:0001883,GO:0002376,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005764,GO:0005768,GO:0005769,GO:0005773,GO:0005776,GO:0005783,GO:0005794,GO:0005802,GO:0005829,GO:0006464,GO:0006725,GO:0006726,GO:0006727,GO:0006807,GO:0006810,GO:0006856,GO:0006873,GO:0006885,GO:0006996,GO:0007005,GO:0007033,GO:0007040,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0008055,GO:0008057,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009605,GO:0009894,GO:0009987,GO:0010256,GO:0010506,GO:0010876,GO:0010883,GO:0010941,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0018130,GO:0019001,GO:0019222,GO:0019438,GO:0019538,GO:0019725,GO:0019748,GO:0019867,GO:0019882,GO:0019915,GO:0021700,GO:0022607,GO:0023052,GO:0030003,GO:0030004,GO:0030139,GO:0030154,GO:0030641,GO:0030659,GO:0030742,GO:0031090,GO:0031323,GO:0031329,GO:0031410,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0031982,GO:0031984,GO:0032438,GO:0032482,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0033036,GO:0033059,GO:0033060,GO:0033162,GO:0033363,GO:0034613,GO:0035556,GO:0035639,GO:0035646,GO:0035650,GO:0035651,GO:0036094,GO:0036211,GO:0036461,GO:0042440,GO:0042441,GO:0042470,GO:0042592,GO:0042886,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043324,GO:0043412,GO:0043473,GO:0043474,GO:0043476,GO:0043482,GO:0043485,GO:0043687,GO:0044085,GO:0044232,GO:0044233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0044840,GO:0044841,GO:0044877,GO:0045009,GO:0045184,GO:0045335,GO:0045851,GO:0046148,GO:0046152,GO:0046158,GO:0046483,GO:0046907,GO:0048066,GO:0048069,GO:0048072,GO:0048753,GO:0048757,GO:0048770,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0050931,GO:0051179,GO:0051234,GO:0051235,GO:0051452,GO:0051453,GO:0051641,GO:0051649,GO:0051716,GO:0055067,GO:0055080,GO:0055082,GO:0060155,GO:0065007,GO:0065008,GO:0070727,GO:0070925,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072657,GO:0080171,GO:0090382,GO:0090383,GO:0090741,GO:0097159,GO:0097367,GO:0097708,GO:0098588,GO:0098771,GO:0098791,GO:0098805,GO:1901214,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1903232,GO:1905952
EggNOG free text desc.BLOC-2 complex binding
EggNOG OGsKOG4423@1,KOG4423@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04031,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size123
Cds size123
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925432.9081972-CDS-S-dermatodea_contig98152:278..4011622925432.9081972-CDS-S-dermatodea_contig98152:278..401Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig98152 279..401 -
1694079929.9512079-CDS-S-dermatodea_contig98152:278..4011694079929.9512079-CDS-S-dermatodea_contig98152:278..401Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig98152 279..401 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig98152.17791.1prot_S-dermatodea_contig98152.17791.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig98152 279..401 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig98152.17791.1

>prot_S-dermatodea_contig98152.17791.1 ID=prot_S-dermatodea_contig98152.17791.1|Name=mRNA_S-dermatodea_contig98152.17791.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=41bp
RYVHDFFSGHHKTTVGVDFALKQLVVNGTTVKLQLWDIAGQ
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mRNA from alignment at S-dermatodea_contig98152:279..401-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig98152.17791.1 ID=mRNA_S-dermatodea_contig98152.17791.1|Name=mRNA_S-dermatodea_contig98152.17791.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=123bp|location=Sequence derived from alignment at S-dermatodea_contig98152:279..401- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGATATGTGCACGACTTTTTTTCTGGGCACCACAAGACTACCGTTGGAGT
GGACTTTGCCTTGAAGCAGCTAGTCGTCAATGGGACGACCGTGAAGCTTC
AGCTCTGGGATATCGCGGGCCAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig98152:279..401-

>mRNA_S-dermatodea_contig98152.17791.1 ID=mRNA_S-dermatodea_contig98152.17791.1|Name=mRNA_S-dermatodea_contig98152.17791.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=246bp|location=Sequence derived from alignment at S-dermatodea_contig98152:279..401- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGATATGTGCACGACTTTTTTTCTGGGCACCACAAGACTACCGTTGGAGT
GGACTTTGCCTTGAAGCAGCTAGTCGTCAATGGGACGACCGTGAAGCTTC
AGCTCTGGGATATCGCGGGCCAGAGATATGTGCACGACTTTTTTTCTGGG
CACCACAAGACTACCGTTGGAGTGGACTTTGCCTTGAAGCAGCTAGTCGT
CAATGGGACGACCGTGAAGCTTCAGCTCTGGGATATCGCGGGCCAG
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