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Homology
BLAST of mRNA_S-dermatodea_contig9808.17784.1 vs. uniprot
Match: D7FR40_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR40_ECTSI) HSP 1 Score: 203 bits (517), Expect = 7.020e-58 Identity = 112/157 (71.34%), Postives = 130/157 (82.80%), Query Frame = 3
Query: 225 LEEATSSAVGKRRTVKMPEAPPDLDTLQLQTENQRRRALPLSRLKRVKPKRRIVADEE-GEFRPLVAKTDRQSVLRGEDYWIDYREVDAKAARKEARAKAPAADQFAQSKIRAEISNPYKQNWILVISMAIVAVAGFIRINPAILDNPTLITFPTEL 692
L+EAT KR +M +APP L++LQ TENQRRRALPLS+LKRVKPK+R +EE GE RPLV KTDR+SVLRGEDYWIDYREVD K A +EA+AKAPA DQFAQSK++AEI NPYKQNWIL IS+AIVA+AGF+RINP ILD+P +ITFP EL
Sbjct: 131 LQEATR-VTPKRMQGRMAQAPPGLESLQ--TENQRRRALPLSKLKRVKPKKRAAKEEEEGEIRPLVLKTDRESVLRGEDYWIDYREVDRKKAIREAKAKAPAPDQFAQSKMKAEIVNPYKQNWILAISLAIVAIAGFVRINPGILDDPAIITFPNEL 284
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 209.1 |
| Seed ortholog evalue | 2e-51 |
| Seed eggNOG ortholog | 2880.D7FR40 |
| EggNOG OGs | 2D131@1,2SGIC@2759 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | signal peptide |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-09_003600.1 |
| Exons | 5 |
| Model size | 1612 |
| Cds size | 642 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig9808.17784.1 >prot_S-dermatodea_contig9808.17784.1 ID=prot_S-dermatodea_contig9808.17784.1|Name=mRNA_S-dermatodea_contig9808.17784.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=214bp
MVFRSRATALVCLVAASFAPCAKGTTGFVAARASLFSHRSAVRGAARMAL
NDGADGALEEATSSAVGKRRTVKMPEAPPDLDTLQLQTENQRRRALPLSR
LKRVKPKRRIVADEEGEFRPLVAKTDRQSVLRGEDYWIDYREVDAKAARK
EARAKAPAADQFAQSKIRAEISNPYKQNWILVISMAIVAVAGFIRINPAI
LDNPTLITFPTEL* back to topmRNA from alignment at S-dermatodea_contig9808:2935..6878- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig9808.17784.1 ID=mRNA_S-dermatodea_contig9808.17784.1|Name=mRNA_S-dermatodea_contig9808.17784.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3944bp|location=Sequence derived from alignment at S-dermatodea_contig9808:2935..6878- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTCCACGCCCTCGGCTACTCCTCACGGGCTCTACCACCCACCTAACACC
ACCATGGTATTCCGAAGCCGCGCAACAGCCCTGGTATGCCTCGTGGCGGC
ATCCTTTGCGCCCTGTGCGAAAGGTATGCCTCTCCAGGCAGAGATCAAAG
AGGGCACGCTCTGCGCTTGCTACAAAAATATTAAATTACGCCGCGTTTTT
GAAGAGGGTGACGTTTCCTGCAGGCTGGGTCAGTCTGATGCTGAGCGACG
CACGGGTCACCTCTCAGCCTCTCAAGCGTGCTCGTTGAACCATTGGCACC
TCGTCCTCGCCGCGAGAACCATGTTGCCCCCGTCGTGTGCTTTTCGTGTG
ACAGTGCCCGCGTGTGCGCGCACTGTCTGTATTCATTTTACCCCCCACGG
TTTGTATCTAAATTCGCTTTGTGTATTATACATGTTGTGACATATTGCGC
GTGCCACGAAGCAGGAACAACGGGCTTCGTTGCAGCGAGAGCGTCCCTGT
TCTCCCACCGAAGCGCAGTACGAGGAGCGGCGCGTATGGCGTTGAACGAC
GGGGCGGACGGAGCACTGGAGGAGGCGACGTCGTCGGCGGTGGGAAAGAG
ACGGACAGTAAAGATGCCGGAGGCGCCGCCGGACCTCGACACGCTTCAGC
TTCAGACAGAGAACCAGCGGCGCCGCGCGCTCCCGCTGAGCCGGCTGAAA
CGCGTCAAGCCCAAGAGGAGGTGGGTTGGTGCGAGCAGACGAGGAGGCAC
TTGAAGGCGGCGAGGCTGCTGTCACGGTATGCCGTCTTTGTGGTGCACGT
CCACTGCTGTTGTGACCGCTCGCCAAGGGCCTCCTGTGCAGTCTCGAAAG
TGTGTTATAGTGAGCCTTGTTATAATATGTAGTTTATGGTATGACGCTTG
TAGCATGATATTTGTTACACCTGTTGTACAAGTACCGACCTTCGACAGGA
CATTGTTTCCTGCTGCGCGCCGGTACCGTCAGCTCACTGCGGTGGGTACA
TGTATGTTGTCAATACCCCCTGCCTCTGAGGGGAAAGACGATTCCGGGCA
AGTGAGTTGCGCGCCGGTTTTTCATCGTTGCTCTTCATGACTTGGGGAGC
CTCTGCACAGGTGCCTCGTAAAATTAGGAGGGGCGTCATCGCCGTCCACG
TTTGTTCACGCGTATACAAGTAAACGACACATGAACGATGATCGTCAAGT
ACGCATACCCACATCATACTACAGTAACGTCATCAACATCCGCCCGGAGT
TCGACCCGAGGACAGACGCGATGTGCTCTTCCCAGCGGCACGCATTATCA
TGTTATATATACCTCCCTCAGAAAATTGCCCGCGTGTCCCCCGGCAGGAT
TGTTGCCGACGAGGAGGGCGAGTTCCGGCCTTTGGTGGCTAAAACTGACC
GCCAGAGCGTCCTGAGGGGGGAGGACTACTGGATCGACTACCGCGAGGTG
AAAACAGTCGAGCGACGCTCTGGTGTGTAGATACCAAGTCCCCAACATAT
GGCAGGATATAACGTGCAGATGCCTCCTTGCGCGTATACTCGAAACTTGG
AGATGAATAGAGAAGTGACAGTCCGAACCGTTTTAGCGACGTTGGGACCC
CGTCAAAACCCGCTTTCGCTTCTCCCTTGCGGGAACGAGACTTAAGAGCC
CTGCTCCTCGTGAAAATATGACAGCTTTACCTTGACAATCGAAGAGAGCC
AAATGGTGGCGGTAGCTCTTGCTCAAGCGTTAGGCTTGTACTCTCAGGGA
TTGGCTTTAAGCTGCTCGAACATCACCGGCCAAACCACAGCGATACGTCG
TTACCGCCCCGGTTGCTCGAGGGCTGTTCAACCAATACAGTACTAAAACA
CGTCTGCGCCAGGCCGCATTATGACGACGGGTCAGTCCAGCCTGATGGCA
AATCTCGATGTGTCTTTAATTTTTACCCTTGACCCCCGCCGTTGGTCGCA
CGGCTATTTTCCACAGGTGGACGCCAAAGCCGCGCGAAAAGAAGCGAGGG
CGAAGGCTCCCGCGGCTGACCAGTTTGCACAGTCGAAAATAAGGGCTGAG
ATATCCAACCCTTACAAGCAAAACTGGATCCTCGTCATCTCCATGGCCAT
AGGTACGGGATGGATGATAGCTTTCCCCTCGCCGCTGCCCTCTGCCTCGC
TTGCCTATTTTCGTCCGTGGCTGGCCGTTGGTTGTATTGCCTCCTGGCGT
GCCTCCTCTGTTTTGATGGACTTGTTGGTTCGGTGATCTTGCTTTCCTAC
GACATGATTTTTTAACGCTTCATCGCTGGCTTTTTGCTTCCGTGAAGCAA
GGACTGCCTATTGGAGTACTCATGCATTTGTTTTTGTGTGCCAGTGACTG
AATTGTGTTTGTAGGGCGGTTTAAACCGTCGTCGTCACCTTAACACCGCC
GGCTTTAGCGACGTTCGAGGCGCGGCCGTGTCGCTTGTGCCCTTGCAAAA
GCGGGGTGGTCTGTGTACCCGATGTAGCACGTCACCTGCTCTCTTTTTTG
CAGACGTAGGGTTGCGGGACCGGCCCTCTTTCGTTTGAGCAATCACGATA
ATACAAGACGGACACGCTGACACCTGAGAGGCGCGCCAACGAAGTGCTGC
GTACGCGTTTGTTTTAAGCGCCTGCGCACTACTTGTAGATGATCTCCCAT
CGCTTGTGCTAGGGGCCATTGCGGACTCTAAGTCCCGTTGCTTCATTCGA
CTGCTGGTTTCCCCAACTAAATGCGAGCGGGATCGGCGACCATTGGCGGG
CAGGTTAGTTGTAAGTGTGATAATGAATCAAGCAATCGAGCACTCAGTGC
GTCATGCTCTGCGGCTTTCATGCTCAACAGACTCTAGGGCGGAGAAACTG
CCTACCCACCCGTTAATCTGGACCCCTCTACTCGTTTTTGGCTGCTGTCG
CTTGCCGCGCTTTGCTTCCCTCGCCTTTCGCGCTTGGGTACGAACAGTCG
CTGTTGCGGGGTTTATCCGCATCAACCCCGCCATCCTGGACAACCCTACC
CTCATCACATTCCCGACGGAGCTTTAAGAAGGCGTGGGTCCAGACTAAGA
GAGCGATCTGTGTGAACACAAACCGCTCTGTGGTGAAAGCCGTGGTGCGC
CTGCGCCTCTCTGGCAGGCTTCAGTTCGGACGGGATGGAACCCTCTATAA
AAGCCTGGTAGTTAACCTAGGAGGGGCCTGGCATCAACCTACTAGGAGCT
TAACGTGGGGCTGCGTTTGATGGGTCCCACGGTTTGCCATAGTGTAAGGC
ACCATTGACTGCATTATGAGTTTACTTCCGTGTCCGTGCGTCCGGCTTCA
CGTTTTTGGACAAACGTGAGACGCTCCTCCAAAGTTTTTTACGGGTAAGG
CAGCCGGTCGACAAAAAAGTGTAGCAAATACGGCAGCCTCGCGTACTCTG
TAGAGGAGGCCTTGCCCCTATTTTAGGGTGTTTGCACCGGGTATGGCGAG
GCCTTGATGTAAACCAGCCGTGGCTTGTTGGACAAGGGATATAAGGAACG
GCGAGATGATGGTATAGATGAAGGGCACGTGGAAGCTCGTATTTGCTTAG
ATCGTTTTGAATTGATGTCCTCATGCAACATGCCTCAAGATAGCGTACAA
AATGATGCAACAACCTATTGGGGAGGCTGCATATCTGTTCGGAATATAAA
TACATATTAAGTTTTCGACCCAGGAGGAGAAAGGGAAAATGTGCCCGCTG
TTTTCCTATCAGCCAAACTTTTTTAAAAGGAGGATTATGATTGGCCGAAC
GTCTTAGTCGACGGGTGATGTCATCCACGGTTATCCACGGTTATGACGTC
AGCATCGGGGCGGAAGAAGTTTTGGTCAGACGAAAAGAAGAAAGCACGGC
TTTTGCCCACATAATTTGCAAACCCAGACCAGGAGAGACGCCGAGTTGTA
CTTTTTTATAATTGTAGTTTTCCAGCATCTTCCGGTGCGCCACC back to topCoding sequence (CDS) from alignment at S-dermatodea_contig9808:2935..6878- >mRNA_S-dermatodea_contig9808.17784.1 ID=mRNA_S-dermatodea_contig9808.17784.1|Name=mRNA_S-dermatodea_contig9808.17784.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1284bp|location=Sequence derived from alignment at S-dermatodea_contig9808:2935..6878- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTATTCCGAAGCCGCGCAACAGCCCTGGTATGCCTCGTGGCGGCATC
CTTTGCGCCCTGTGCGAAAGATGGTATTCCGAAGCCGCGCAACAGCCCTG
GTATGCCTCGTGGCGGCATCCTTTGCGCCCTGTGCGAAAGGAACAACGGG
CTTCGTTGCAGCGAGAGCGTCCCTGTTCTCCCACCGAAGCGCAGTACGAG
GAGCGGCGCGTATGGCGTTGAACGACGGGGCGGACGGAGCACTGGAGGAG
GCGACGTCGTCGGCGGTGGGAAAGAGACGGACAGTAAAGATGCCGGAGGC
GCCGCCGGACCTCGACACGCTTCAGCTTCAGACAGAGAACCAGCGGCGCC
GCGCGCTCCCGCTGAGCCGGCTGAAACGCGTCAAGCCCAAGAGGAGGAAC
AACGGGCTTCGTTGCAGCGAGAGCGTCCCTGTTCTCCCACCGAAGCGCAG
TACGAGGAGCGGCGCGTATGGCGTTGAACGACGGGGCGGACGGAGCACTG
GAGGAGGCGACGTCGTCGGCGGTGGGAAAGAGACGGACAGTAAAGATGCC
GGAGGCGCCGCCGGACCTCGACACGCTTCAGCTTCAGACAGAGAACCAGC
GGCGCCGCGCGCTCCCGCTGAGCCGGCTGAAACGCGTCAAGCCCAAGAGG
AGGATTGTTGCCGACGAGGAGGGCGAGTTCCGGCCTTTGGTGGCTAAAAC
TGACCGCCAGAGCGTCCTGAGGGGGGAGGACTACTGGATCGACTACCGCG
AGGATTGTTGCCGACGAGGAGGGCGAGTTCCGGCCTTTGGTGGCTAAAAC
TGACCGCCAGAGCGTCCTGAGGGGGGAGGACTACTGGATCGACTACCGCG
AGGTGGACGCCAAAGCCGCGCGAAAAGAAGCGAGGGCGAAGGCTCCCGCG
GCTGACCAGTTTGCACAGTCGAAAATAAGGGCTGAGATATCCAACCCTTA
CAAGCAAAACTGGATCCTCGTCATCTCCATGGCCATAGGTGGACGCCAAA
GCCGCGCGAAAAGAAGCGAGGGCGAAGGCTCCCGCGGCTGACCAGTTTGC
ACAGTCGAAAATAAGGGCTGAGATATCCAACCCTTACAAGCAAAACTGGA
TCCTCGTCATCTCCATGGCCATAGTCGCTGTTGCGGGGTTTATCCGCATC
AACCCCGCCATCCTGGACAACCCTACCCTCATCACATTCCCGACGGAGCT
TTAATCGCTGTTGCGGGGTTTATCCGCATCAACCCCGCCATCCTGGACAA
CCCTACCCTCATCACATTCCCGACGGAGCTTTAA back to top
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