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Homology
BLAST of mRNA_S-dermatodea_contig9787.17766.1 vs. uniprot
Match: D7FM87_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM87_ECTSI) HSP 1 Score: 275 bits (702), Expect = 1.420e-78 Identity = 220/409 (53.79%), Postives = 243/409 (59.41%), Query Frame = 1
Query: 1 RYGHILAPADLRSLLPSKDPEVTLHITRLQTLMSQQQPPKLDDADDVDMPPATASAALAALSPPYPRPAGVRRPRGGRSPCPPDG------------ARARNRRYRRLQQLAEGGVWFSDEAMKERDPWLWFEYVGRKAGEERPAPKGAVEEVPGSTSVGTYLQESLGFLSQKP--GDWPTGKAPASAAAGAAAGARTMGTGPSLGMAFLSGLCAADNGALDIGPGETVDVSDIPASPPTVTPTGGVSTPSGGLSKAEPFTVDADDGDGCRETAAVTAAVAAFGIQSETEDDDAPRSENAADGDVRHVRFVDQTGVVLEAGRESDEXXXXXXXXXXXXXXXXXXXXXXXXELGAGGREEVARVLSERFMAGEEAGVNYQDVDGDERLDDLDQLARDEEDRWFRGQGDDG 1185
R+GHIL P DL SLLPS+DP V LH+ RL+TLM Q AR RNRRYRRLQQLAEGGVWFSDEAMKERDPWLWFEYVG+ AGEE+PAPK AVEEVPGSTSVGTYLQESLGFLSQK G WPTG P S A SLGMAFLSG+CA D GA D+ GETVD SD+P + + V SG E + DD D AAVTAAV A G+Q DD + AD D R VRF D+ G G XXXXXXXXXXXXXXXXXXXXXXXX GREEVAR+LSERF+AG E GV+Y+ VDGDERLDDLDQL+RDE+DRWF G+ +DG
Sbjct: 98 RFGHILTPGDLESLLPSQDPAVALHVARLKTLMLSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARVRNRRYRRLQQLAEGGVWFSDEAMKERDPWLWFEYVGKHAGEEKPAPKQAVEEVPGSTSVGTYLQESLGFLSQKQPNGGWPTGL-PTSGAGAGXXXXXXXXXXTSLGMAFLSGVCA-DAGARDVAAGETVDSSDVPEAASSQAEVTAVPIASGMPDGRERHACE-DDVDA--RAAAVTAAVGAIGLQ-----DDGKK----ADVDGRRVRFSDEMGSDGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----GREEVARILSERFLAGLEQGVDYRSVDGDERLDDLDQLSRDEQDRWFLGEEEDG 487
BLAST of mRNA_S-dermatodea_contig9787.17766.1 vs. uniprot
Match: UPI0019D51158 (coiled-coil domain-containing protein 97-like isoform X2 n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D51158) HSP 1 Score: 57.8 bits (138), Expect = 3.350e-5 Identity = 34/70 (48.57%), Postives = 43/70 (61.43%), Query Frame = 1
Query: 166 AALAALSPPYPRPAGVRRPRGGRSPCPPDGARARNRRYRRLQQLAEGGVWFSDEAMKERDPWLWFEYVGR 375
AA ALSP Y +RR R + PP AR RNRR L +L G +FS+EAM+ER+P+L EY+GR
Sbjct: 69 AAFDALSPDYEVDWHLRRLRAAAAGAPPPAARVRNRRRAYLDRLVREGDYFSEEAMREREPYLHHEYLGR 138
BLAST of mRNA_S-dermatodea_contig9787.17766.1 vs. uniprot
Match: F2TWH5_SALR5 (DUF2052 domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TWH5_SALR5) HSP 1 Score: 57.8 bits (138), Expect = 3.880e-5 Identity = 25/37 (67.57%), Postives = 32/37 (86.49%), Query Frame = 1
Query: 265 RNRRYRRLQQLAEGGVWFSDEAMKERDPWLWFEYVGR 375
RNRRYRR+QQL + G +FS+EAMKER PWL+ ++VGR
Sbjct: 92 RNRRYRRMQQLLQEGTFFSEEAMKERCPWLYDQFVGR 128
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Protein of unknown function DUF2052, coiled-coil |
| Ec32 ortholog | Ec-16_004690.1 |
| Exons | 4 |
| Model size | 2961 |
| Cds size | 1167 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig9787.17766.1 >prot_S-dermatodea_contig9787.17766.1 ID=prot_S-dermatodea_contig9787.17766.1|Name=mRNA_S-dermatodea_contig9787.17766.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=389bp
MSQQQPPKLDDADDVDMPPATASAALAALSPPYPRPAGVRRPRGGRSPCP
PDGARARNRRYRRLQQLAEGGVWFSDEAMKERDPWLWFEYVGRKAGEERP
APKGAVEEVPGSTSVGTYLQESLGFLSQKPGDWPTGKAPASAAAGAAAGA
RTMGTGPSLGMAFLSGLCAADNGALDIGPGETVDVSDIPASPPTVTPTGG
VSTPSGGLSKAEPFTVDADDGDGCRETAAVTAAVAAFGIQSETEDDDAPR
SENAADGDVRHVRFVDQTGVVLEAGRESDEEDDDAMQEDEGEEEEEEEEE
EEEDELGAGGREEVARVLSERFMAGEEAGVNYQDVDGDERLDDLDQLARD
EEDRWFRGQGDDGIAEDPIYSEQDQFNKSLTFKSSILP* back to topmRNA from alignment at S-dermatodea_contig9787:76..5277+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig9787.17766.1 ID=mRNA_S-dermatodea_contig9787.17766.1|Name=mRNA_S-dermatodea_contig9787.17766.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5202bp|location=Sequence derived from alignment at S-dermatodea_contig9787:76..5277+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGGTATGGCCACATCCTCGCCCCCGCCGATCTCAGGTCCCTCCTCCCTTC
TAAAGACCCGGAGGTCACTCTTCACATCACAAGGCTGCAAACCCTCATGT
CCCAACAGCAGCCACCGAAATTGGACGACGCAGACGACGTCGACATGCCC
CCCGCGACAGCATCAGCTGCGCTGGCGGCACTGTCGCCACCTTACCCTCG
CCCCGCGGGAGTCCGCCGCCCGCGGGGCGGGCGGTCTCCGTGCCCTCCAG
ACGGCGCGCGGGCGCGCAATCGCCGGTACAGGAGGCTGCAGCAGCTGGCG
GAGGGAGGTGTCTGGTTTAGCGATGAGGCGATGAAAGAGAGGGATCCGTG
GTTGTGGTTCGAGTACGTGGGGAGAAAGGCCGGGGAGGAGAGACCCGCGC
CTAAGGGGGCGGTGGAAGAGGTGGGTTTCTTTGGAAGGAAGGGGCGGGGG
AGGGGGGGGGGGGGGGGGGGGGGAGGCAATTAGCTTACGCTCGGTTAAAA
TCCNNNNNNNNNNCGGCGCTTCGCGCGGCCGAGGGGGGGGACGGGAAAGG
GGGGTGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTGTGTGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGTACCTATG
TTAAATTCGTGTCGTATCCAAATTGGCGTAGATCACGCGTCCCAACAATG
CCGGGACGGAGCGATACGCCGGATTTTCGCCGGCCAAGCTGGGGTTCACA
AGGACGATACTAGCGGTTAGCCATCATCCTTGCGTTTGCGATGCCAAACG
ATATGCCATGGGTTGATTGGCCATACCGGGCGACCAAATGTTGCCTATTT
GGGGGGGATGGGGGGGGGGGTGCCGATATATTTTTGTAGCACCGCGTCTG
ATAACCCCCATCGTGTGTATATCACGCTGGGTTCTCTTTGTACCAAAAAG
TGCATTGATGCTATACCAGAGTTCCTGTTGGACACAAATAATTTGAGGAT
CCAGGGAGACTGCTCCAGGGTGGACATGAAAGAGGCTTGCGATTCCGTAT
ACCCCAAGCATGCTCTCTTTTTCTCGTACGGTACTGAGTGGCGAGGAATT
TCTGTTCAAGTGACGTGATTGGATAGAGCGTGCTCGGCCACGTACTACGT
ATAAGCGCAGCTTTAAAGTATTCACAACGACATCGTACCTGAACCCAGCA
CGCGTGGCCCGCGTCTCGTGCGATTCGCCCTGCCAACTTTGGTGATATCA
ACAGGAGTTCGCCCCTGCGAACGAAGGGCTGCAACCCGACCACTTGCGGG
CCGAAATAATTTAGGCATGGCAACAAAGATTGACCCAGTAACAACGTCGT
TCTAAAACCCCACGTCCAGGTCCCCGGGAGCACATCGGTCGGCACCTATC
TGCAGGAAAGCTTGGGATTCTTGTCCCAGAAACCAGGAGACTGGCCGACC
GGCAAGGCCCCTGCCTCTGCCGCCGCTGGTGCTGCCGCCGGAGCGAGGAC
GATGGGGACGGGGCCGTCCCTTGGGATGGCGTTTCTGTCCGGGCTGTGTG
CCGCGGGTGATGGGGATGGCGAGAACGGAGAGCCCTGTGGGGAGGTGGAC
ATGGAGGTGGACGTGGCGTTGGAACGACGGCGATCAACAAGAGGTGCAAT
GCGTAGCATCACGTGTCTTGTTGTTGCGGCCAGTCGGTTGGTGGAGACTG
GTCGTTAGGAGACTTGCCGTTAAGAGACTGGTCGTTAATTTTTCCGGCCG
GTCGGAGGGTAGAGCCGAGCACGATTGATGCGCAAGGCCGCCGGTGCCAA
GGGGGAGAAAGAAGCTCACGGTGGTCGTTCGTGTGGGTTGTTTTTGTGTG
AGTTCGATCGTGTTGCTTCTGAAGGGGCGAAACGAACTGTGGGAGTCCTG
ATGATTTTGCGATGGTGCTTTGGGCGCTGCTCTTAGCCGGAGTGTCATAG
CTGCCATCGGGCGCCTCGTCTTCGTCGCCCCTGCGTGTGGCACGGCGATT
TGATCGTCCGTTGCCCGGCTAAAACAAAAACGGGGCTCCCTGTGATTCAA
GCGGGCAAGTTCACTGAAGGCTTCAGCAGTTTTCCCGCCAACGATCTTTC
AGCGTTCGCAAGCCATCGCGATGCCGGTAGAGTGGGGTAGCTTGAAGCTT
GGCCACGGACGGCCCCAGGGCGATGGAAAAGGGTAGATGCCCTCGCCGAA
TAGGCTCACGATACCGGTTGCATCGCTAGACTCCGCCCCCTCTGAATGCG
AAAAGCACAGGCGAGTGCATTTCCGCCATCTACCCCCGCACTCCAACGTC
GACCCCCCCCGCCCCCGCCCCCACCCCCGCCCCCGCGCGCCAACGCCAGA
TAACGGAGCTCTAGATATAGGACCCGGAGAAACGGTCGACGTTAGCGACA
TTCCAGCGTCCCCGCCGACAGTAACGCCAACAGGAGGTGTTTCAACACCC
TCTGGCGGCTTGTCGAAAGCGGAGCCCTTTACGGTGGATGCCGACGACGG
CGATGGCTGCCGCGAGACGGCGGCGGTCACCGCAGCAGTTGCCGCGTTCG
GTATCCAGAGCGAAACAGAAGATGACGACGCCCCCCGTTCGGAAAACGCC
GCCGATGGTGATGTCCGCCACGTTCGTTTTGTGGACCAGACAGGAGTGGT
GTTGGAGGCCGGTCGGGAGAGCGACGAAGAAGATGATGATGCCATGCAGG
AAGACGAGGGAGAGGAGGAAGAGGAGGAAGAAGAGGAAGAAGAGGAAGAT
GAGCTAGGCGCGGGGGGGAGAGAGGAAGTTGCGCGCGTTCTGTCGGAACG
GTTTATGGCTGGAGAAGAAGCCGGCGTGAATTACCAGGACGTCGACGGGG
ATGAGAGGCTGGACGACCTGGACCAGCTTGCGCGGGACGAGGTGGGGCGA
TCTATATCGACCGAGAAGGTTGCGTGCACGCTTCGTTGTATTCCCGGTCG
AGCCGTAAGCAAGATGGTCGTCCGTTGGGCATCAAGGAAGAGCAAGACGT
TATATTGTTTTGTGTCCTTCCGATGAAGCGAGTGCGTGGTTTTGCTGGCC
TCGAGCTATTACAGCAGTGCTTCGGTGTACGTGGCGCATGTGAAATGCGC
GGAGCTGTTTTGTGCGTCACTGGCCCTGTGCAGAGTAGTACTGTATTGTA
ATAGGAAAACGCAAAGCAAACAAGCCAAGCATTTACTCCTCTATCCGAGC
TTCGTACTGTAGTTGCCACTGGATAGAACCTCGGTAATATCGCTACATCT
TATGCATACCAACTTCCGGACATTTTGATGTAACGGTACCCTTTTATCCC
TCACCCACCGTTGTTCCCGGTACGCGATTATTAATATGTACTGACACTAT
GTATACCCCGTGTTGTGCAATGTGCTCTCGATTGGTGCAGGAAGATCGCT
GGTTTCGGGGCCAAGGAGACGATGGTATTGCAGAGGATCCTATTTATAGC
GAACAGGATCAATTCAACAAAAGTCTAACCTTTAAAAGCAGTATTTTACC
ATAATATTAATAATTACCCGGACCTCGTTTATTTTATGGTAAGAGGATAT
CTGTTTGGGTATTCATGGTGGATAGATACATTTGGGTGTTCAAGGTTGGG
ACAGTTGGGTATTCATGGTGATGATATTTGGTTCTGATTACTGTCTACTG
TACCTCCGTAATATAGGCTAAAGATATAGGCTAAAGTAGCGACGCACAAT
CATGCCAAGGCCTCGCTGTCGCGAATGGTTGGCGCGGCGTCCTATGGCGG
CTGCAGCCCTGCGGTTGTAGCCCATGGTTCCGTGTTTTTTTGCTCGAAAC
GCCGCTTCGGCGCGGGAGCCCTCGCTGCCCATTAAGTATAAACTACCCCC
CAATCGTTTTCGATTTGTTCGCGTTGGAACATAGAGTGAGCTACACAGGC
ACGGAAATCCAGAGCCAAAGGTGTTTCGTTTTTGCTCGGCTTCGGAGGTG
CTCTCAGTCTGCAAAGCGTTAGCGGCTTACTCTTGTAGTACCGAGATCGA
TGTTAGTCAGGGCGTATTTACTGTAGTATTTGTACATATAGTAGACGAGG
GGGGTTGGGACCTTGGCGTTTTAGGGAGTAGTATGATACAGCTGCAGTAT
TAATTGTATTATTGAAGCCAACCCTTTTACATTTTCGACACGAACATTGC
TTTGTGAAGCTGTTCAAAATTCGAGCTACCTGGTACTTTATAGAGGGTTG
CGTAGGTTGAGTTTTGGGACGAGGTTATCGTGGACAGTACGGTGCTGGCA
TTGTCCTTGCGCGGGACTCGTGTGCAAACTCCCACCGGCTGTTTACAGTC
TACACGCGAGCCAGTACTCGACGGATGATATTCATCGAGTCAAATGGGAT
CTCATCCACTCTCTGCGTGCCACTCTCAATAGCTGCATCTGTTATATTGC
TGTGTATTGCAAGTGAGTGTATGTTAGCTATCCCATTTGACACGCACATC
CCGGGCAATATAAATGTACGATTGCTTTCGTTCGCGAACACCTGACAGAG
CTCTGCAGTTTTTTACTATTGTGGTCTACATACAACGCGCTCTCCCTTCC
CAGCTTGCTGTGTTATGTACTAATATATGTGCAGTGTCACTAAATATTAT
TACGGTGTTGTCAGCTACAGGTAATACTACTGTACTTCCAGCAGCATTTT
GCAACGTTTCACTGTTATTTAGCTGGTGCATACGCGTGACGGAGAATTCT
CCGCACGGCGTCGCATTACAGCGGCTTCCGCGGCCCATCACGCACCGCTC
GCTGCCTTCCACAAATAATTAAACCACGCAATGAAAATACGAAGCCACGG
TCTAAAGGCGACCGGCGGTAGCGGACTCAACTCGTCGAGGGAGAGACACA
CACATATATCTCGGTACACATGAGAGACCGAACAACTCACTTGGTGATAA
AGTCACAAAAACGGTTGCAATAATTGGCACTTTCAATCGCGTCCCGGACT
GGGCCATCTTTGCGTGCCCCCCCTCGTAATCCTCGCGCATGTCTATCGAT
CGGCTGCCGCAGCAAATTAGGCCGTCTACCCCACCCCCTCCTGCCATTCC
CACACATTCTCGCAGCGCCGGGCCCTCTTCGTTTCTCTCTATGTTGCCCA
CCGATTTCCACCAACAAATACAGAGACAAACCGCCATCAAAATACCCTCA
GGATAACGCCACCCATCTCTGCCCTGAATGGCTCCCCGCACGAACATTTA
GG back to topCoding sequence (CDS) from alignment at S-dermatodea_contig9787:76..5277+ >mRNA_S-dermatodea_contig9787.17766.1 ID=mRNA_S-dermatodea_contig9787.17766.1|Name=mRNA_S-dermatodea_contig9787.17766.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2334bp|location=Sequence derived from alignment at S-dermatodea_contig9787:76..5277+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCCCAACAGCAGCCACCGAAATTGGACGACGCAGACGACGTCGACAT
GCCCCCCGCGACAGCATCAGCTGCGCTGGCGGCACTGTCGCCACCTTACC
CTCGCCCCGCGGGAGTCCGCCGCCCGCGGGGCGGGCGGTCTCCGTGCCCT
CCAGACGGCGCGCGGGCGCGCAATCGCCGGTACAGGAGGCTGCAGCAGCT
GGCGGAGGGAGGTGTCTGGTTTAGCGATGAGGCGATGAAAGAGAGGGATC
CGTGGTTGTGGTTCGAGTACGTGGGGAGAAAGGCCGGGGAGGAGAGACCC
GCGCCTAAGGGGGCGGTGGAAGAGATGTCCCAACAGCAGCCACCGAAATT
GGACGACGCAGACGACGTCGACATGCCCCCCGCGACAGCATCAGCTGCGC
TGGCGGCACTGTCGCCACCTTACCCTCGCCCCGCGGGAGTCCGCCGCCCG
CGGGGCGGGCGGTCTCCGTGCCCTCCAGACGGCGCGCGGGCGCGCAATCG
CCGGTACAGGAGGCTGCAGCAGCTGGCGGAGGGAGGTGTCTGGTTTAGCG
ATGAGGCGATGAAAGAGAGGGATCCGTGGTTGTGGTTCGAGTACGTGGGG
AGAAAGGCCGGGGAGGAGAGACCCGCGCCTAAGGGGGCGGTGGAAGAGGT
CCCCGGGAGCACATCGGTCGGCACCTATCTGCAGGAAAGCTTGGGATTCT
TGTCCCAGAAACCAGGAGACTGGCCGACCGGCAAGGCCCCTGCCTCTGCC
GCCGCTGGTGCTGCCGCCGGAGCGAGGACGATGGGGACGGGGCCGTCCCT
TGGGATGGCGTTTCTGTCCGGGCTGTGTGCCGCGGGTCCCCGGGAGCACA
TCGGTCGGCACCTATCTGCAGGAAAGCTTGGGATTCTTGTCCCAGAAACC
AGGAGACTGGCCGACCGGCAAGGCCCCTGCCTCTGCCGCCGCTGGTGCTG
CCGCCGGAGCGAGGACGATGGGGACGGGGCCGTCCCTTGGGATGGCGTTT
CTGTCCGGGCTGTGTGCCGCGGATAACGGAGCTCTAGATATAGGACCCGG
AGAAACGGTCGACGTTAGCGACATTCCAGCGTCCCCGCCGACAGTAACGC
CAACAGGAGGTGTTTCAACACCCTCTGGCGGCTTGTCGAAAGCGGAGCCC
TTTACGGTGGATGCCGACGACGGCGATGGCTGCCGCGAGACGGCGGCGGT
CACCGCAGCAGTTGCCGCGTTCGGTATCCAGAGCGAAACAGAAGATGACG
ACGCCCCCCGTTCGGAAAACGCCGCCGATGGTGATGTCCGCCACGTTCGT
TTTGTGGACCAGACAGGAGTGGTGTTGGAGGCCGGTCGGGAGAGCGACGA
AGAAGATGATGATGCCATGCAGGAAGACGAGGGAGAGGAGGAAGAGGAGG
AAGAAGAGGAAGAAGAGGAAGATGAGCTAGGCGCGGGGGGGAGAGAGGAA
GTTGCGCGCGTTCTGTCGGAACGGTTTATGGCTGGAGAAGAAGCCGGCGT
GAATTACCAGGACGTCGACGGGGATGAGAGGCTGGACGACCTGGACCAGC
TTGCGCGGGACGAGATAACGGAGCTCTAGATATAGGACCCGGAGAAACGG
TCGACGTTAGCGACATTCCAGCGTCCCCGCCGACAGTAACGCCAACAGGA
GGTGTTTCAACACCCTCTGGCGGCTTGTCGAAAGCGGAGCCCTTTACGGT
GGATGCCGACGACGGCGATGGCTGCCGCGAGACGGCGGCGGTCACCGCAG
CAGTTGCCGCGTTCGGTATCCAGAGCGAAACAGAAGATGACGACGCCCCC
CGTTCGGAAAACGCCGCCGATGGTGATGTCCGCCACGTTCGTTTTGTGGA
CCAGACAGGAGTGGTGTTGGAGGCCGGTCGGGAGAGCGACGAAGAAGATG
ATGATGCCATGCAGGAAGACGAGGGAGAGGAGGAAGAGGAGGAAGAAGAG
GAAGAAGAGGAAGATGAGCTAGGCGCGGGGGGGAGAGAGGAAGTTGCGCG
CGTTCTGTCGGAACGGTTTATGGCTGGAGAAGAAGCCGGCGTGAATTACC
AGGACGTCGACGGGGATGAGAGGCTGGACGACCTGGACCAGCTTGCGCGG
GACGAGGAAGATCGCTGGTTTCGGGGCCAAGGAGACGATGGTATTGCAGA
GGATCCTATTTATAGCGAACAGGATCAATTCAACAAAAGTCTAACCTTTA
AAAGCAGTATTTTACCATAAGAAGATCGCTGGTTTCGGGGCCAAGGAGAC
GATGGTATTGCAGAGGATCCTATTTATAGCGAACAGGATCAATTCAACAA
AAGTCTAACCTTTAAAAGCAGTATTTTACCATAA back to top
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