mRNA_S-dermatodea_contig97823.17764.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig97823.17764.1
Unique NamemRNA_S-dermatodea_contig97823.17764.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig97823.17764.1 vs. uniprot
Match: D7FU41_ECTSI (Pre-mRNA-splicing factor SLU7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU41_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 6.830e-26
Identity = 45/54 (83.33%), Postives = 49/54 (90.74%), Query Frame = 1 
Query:    7 QAVAKSKYEENIFPGNHTTVWGSYFDMRSMRWGFGCCHSLTSKSYCTGEAGKVS 168
            +AVAKSKYEEN+FP NHT+VWGSYFD RSMRWGF CCHSLT KSYCTGE GKV+
Sbjct:  465 KAVAKSKYEENVFPSNHTSVWGSYFDKRSMRWGFSCCHSLTFKSYCTGEEGKVA 518
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BLAST of mRNA_S-dermatodea_contig97823.17764.1 vs. uniprot
Match: J5T247_TRIAS (Pre-mRNA-splicing factor SLU7 n=2 Tax=Trichosporon asahii var. asahii TaxID=189963 RepID=J5T247_TRIAS)

HSP 1 Score: 90.9 bits (224), Expect = 6.090e-20
Identity = 36/54 (66.67%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    1 RSQAVAKSKYEENIFPGNHTTVWGSYFDMRSMRWGFGCCHSLTSKSYCTGEAGK 162
            + QA AKSKY E++FP NHT+VWGS++D  S +WGF CCHSL ++SYCTGEAGK
Sbjct:  375 QEQAKAKSKYPEDVFPNNHTSVWGSWYDRESGQWGFACCHSLIARSYCTGEAGK 428
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BLAST of mRNA_S-dermatodea_contig97823.17764.1 vs. uniprot
Match: A0A5M6C9K8_9TREE (Pre-mRNA-splicing factor SLU7 n=1 Tax=Kwoniella shandongensis TaxID=1734106 RepID=A0A5M6C9K8_9TREE)

HSP 1 Score: 90.5 bits (223), Expect = 8.480e-20
Identity = 36/54 (66.67%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    1 RSQAVAKSKYEENIFPGNHTTVWGSYFDMRSMRWGFGCCHSLTSKSYCTGEAGK 162
            R +A A+SKYEE+IF  NHT VWGSY+D+ + +WG+GCCHS+ S SYCTGEAGK
Sbjct:  386 REKAKARSKYEEDIFVNNHTCVWGSYYDIETSQWGYGCCHSILSGSYCTGEAGK 439
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BLAST of mRNA_S-dermatodea_contig97823.17764.1 vs. uniprot
Match: A0A1B9GR03_9TREE (Pre-mRNA-splicing factor SLU7 n=2 Tax=Kwoniella heveanensis TaxID=89924 RepID=A0A1B9GR03_9TREE)

HSP 1 Score: 90.1 bits (222), Expect = 1.160e-19
Identity = 36/56 (64.29%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    1 RSQAVAKSKYEENIFPGNHTTVWGSYFDMRSMRWGFGCCHSLTSKSYCTGEAGKVS 168
            R +A  +SKYEE+++  NHT VWGSY+D++S  WGFGCCHSL S SYCTGEAGK +
Sbjct:  386 REKAKVRSKYEEDVYINNHTAVWGSYYDVQSGAWGFGCCHSLISGSYCTGEAGKAA 441
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BLAST of mRNA_S-dermatodea_contig97823.17764.1 vs. uniprot
Match: A0A1A6A3B6_9TREE (Pre-mRNA-splicing factor SLU7 n=2 Tax=Kwoniella TaxID=490731 RepID=A0A1A6A3B6_9TREE)

HSP 1 Score: 89.0 bits (219), Expect = 2.970e-19
Identity = 34/56 (60.71%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    1 RSQAVAKSKYEENIFPGNHTTVWGSYFDMRSMRWGFGCCHSLTSKSYCTGEAGKVS 168
            R +AVA+SKY+E+++  NHT +WGSY+D+ + +WGF CCHSL S SYCTGEAGK +
Sbjct:  387 REKAVARSKYDEDVYINNHTAIWGSYYDISNGQWGFACCHSLLSGSYCTGEAGKTA 442
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BLAST of mRNA_S-dermatodea_contig97823.17764.1 vs. uniprot
Match: A0A1B9G0P2_9TREE (Pre-mRNA-splicing factor SLU7 n=2 Tax=Kwoniella TaxID=490731 RepID=A0A1B9G0P2_9TREE)

HSP 1 Score: 88.6 bits (218), Expect = 4.020e-19
Identity = 34/54 (62.96%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    1 RSQAVAKSKYEENIFPGNHTTVWGSYFDMRSMRWGFGCCHSLTSKSYCTGEAGK 162
            R +AV +SKY+E+++  NHT++WGSY+D+ S  WG+GCCHSL S SYCTGEAGK
Sbjct:  390 RERAVPRSKYDEDVYINNHTSIWGSYYDLSSGTWGYGCCHSLISGSYCTGEAGK 443
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BLAST of mRNA_S-dermatodea_contig97823.17764.1 vs. uniprot
Match: A0A836CLD5_9STRA (Pre-mRNA-splicing factor SLU7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLD5_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 4.090e-19
Identity = 33/55 (60.00%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:    4 SQAVAKSKYEENIFPGNHTTVWGSYFDMRSMRWGFGCCHSLTSKSYCTGEAGKVS 168
            +QAVA+SKYEE++ PGNH +VWGSY++ R+ RWGF CCH+L+  +YCTG AG+ +
Sbjct:  431 AQAVARSKYEEDVVPGNHASVWGSYYERRAGRWGFACCHALSRAAYCTGAAGRAA 485
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BLAST of mRNA_S-dermatodea_contig97823.17764.1 vs. uniprot
Match: UPI001905E684 (pre-mRNA-splicing factor SLU7 n=1 Tax=Cantharellus anzutake TaxID=1750568 RepID=UPI001905E684)

HSP 1 Score: 87.4 bits (215), Expect = 1.030e-18
Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 RSQAVAKSKYEENIFPGNHTTVWGSYFDMRSMRWGFGCCHSLTSKSYCTGEAG 159
            R +A A+S+Y+EN++PGNHT+VWGS++D+ S +WGF CCHS  S SYCTG AG
Sbjct:  383 RERAKARSRYDENVYPGNHTSVWGSWYDLSSGKWGFACCHSSISNSYCTGAAG 435
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BLAST of mRNA_S-dermatodea_contig97823.17764.1 vs. uniprot
Match: A0A2S4UIR4_9BASI (Pre-mRNA-splicing factor SLU7 (Fragment) n=2 Tax=Puccinia striiformis TaxID=27350 RepID=A0A2S4UIR4_9BASI)

HSP 1 Score: 85.9 bits (211), Expect = 3.630e-18
Identity = 32/53 (60.38%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 RSQAVAKSKYEENIFPGNHTTVWGSYFDMRSMRWGFGCCHSLTSKSYCTGEAG 159
            + +A AKSKY+E+++PGNH +VWGS++D++ M WGF CCHS T  SYCTG+AG
Sbjct:  444 QERAKAKSKYDEDVYPGNHISVWGSWYDIKKMIWGFSCCHSTTKHSYCTGKAG 496
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BLAST of mRNA_S-dermatodea_contig97823.17764.1 vs. uniprot
Match: SLU7_YARLI (Pre-mRNA-splicing factor SLU7 n=3 Tax=Yarrowia lipolytica TaxID=4952 RepID=SLU7_YARLI)

HSP 1 Score: 85.5 bits (210), Expect = 3.770e-18
Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    4 SQAVAKSKYEENIFPGNHTTVWGSYFDMRSMRWGFGCCHSLTSKSYCTGEAGK 162
            +Q +A SKYEE++FPGNHT+VWGSY+D  + +WG+ CCH L    YC GE GK
Sbjct:  355 AQGIAVSKYEEDVFPGNHTSVWGSYYDKETAKWGYACCHCLIKNGYCVGEKGK 407
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig97823.17764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU41_ECTSI6.830e-2683.33Pre-mRNA-splicing factor SLU7 n=2 Tax=Ectocarpus T... [more]
J5T247_TRIAS6.090e-2066.67Pre-mRNA-splicing factor SLU7 n=2 Tax=Trichosporon... [more]
A0A5M6C9K8_9TREE8.480e-2066.67Pre-mRNA-splicing factor SLU7 n=1 Tax=Kwoniella sh... [more]
A0A1B9GR03_9TREE1.160e-1964.29Pre-mRNA-splicing factor SLU7 n=2 Tax=Kwoniella he... [more]
A0A1A6A3B6_9TREE2.970e-1960.71Pre-mRNA-splicing factor SLU7 n=2 Tax=Kwoniella Ta... [more]
A0A1B9G0P2_9TREE4.020e-1962.96Pre-mRNA-splicing factor SLU7 n=2 Tax=Kwoniella Ta... [more]
A0A836CLD5_9STRA4.090e-1960.00Pre-mRNA-splicing factor SLU7 n=1 Tax=Tribonema mi... [more]
UPI001905E6841.030e-1862.26pre-mRNA-splicing factor SLU7 n=1 Tax=Cantharellus... [more]
A0A2S4UIR4_9BASI3.630e-1860.38Pre-mRNA-splicing factor SLU7 (Fragment) n=2 Tax=P... [more]
SLU7_YARLI3.770e-1858.49Pre-mRNA-splicing factor SLU7 n=3 Tax=Yarrowia lip... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig97823contigS-dermatodea_contig97823:266..442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.5
Seed ortholog evalue2.2e-21
Seed eggNOG ortholog2880.D7FU41
Preferred nameSLU7
KEGG koko:K12819,ko:K17081,ko:K20040
KEGG Pathwayko03040,map03040
GOsGO:0000350,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008284,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0022607,GO:0022613,GO:0022618,GO:0032991,GO:0034622,GO:0034641,GO:0042127,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0065003,GO:0065007,GO:0071020,GO:0071021,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.RNA splicing
EggNOG OGsKOG2560@1,KOG2560@2759
Ec32 ortholog descriptionPre-mRNA splicing Prp18-interacting factor
Ec32 orthologEc-25_000730.1
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko03041,ko04131,ko04147
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size177
Cds size177
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925430.9717047-CDS-S-dermatodea_contig97823:265..4421622925430.9717047-CDS-S-dermatodea_contig97823:265..442Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig97823 266..442 +
1694079928.8055706-CDS-S-dermatodea_contig97823:265..4421694079928.8055706-CDS-S-dermatodea_contig97823:265..442Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig97823 266..442 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig97823.17764.1prot_S-dermatodea_contig97823.17764.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig97823 266..442 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig97823.17764.1

>prot_S-dermatodea_contig97823.17764.1 ID=prot_S-dermatodea_contig97823.17764.1|Name=mRNA_S-dermatodea_contig97823.17764.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=59bp
RSQAVAKSKYEENIFPGNHTTVWGSYFDMRSMRWGFGCCHSLTSKSYCTG
EAGKVSLA*
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mRNA from alignment at S-dermatodea_contig97823:266..442+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig97823.17764.1 ID=mRNA_S-dermatodea_contig97823.17764.1|Name=mRNA_S-dermatodea_contig97823.17764.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=177bp|location=Sequence derived from alignment at S-dermatodea_contig97823:266..442+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGCTCTCAGGCGGTGGCGAAGTCCAAGTACGAAGAAAACATATTCCCGGG
AAACCACACGACAGTGTGGGGGAGCTACTTCGACATGCGCTCAATGCGGT
GGGGCTTCGGCTGCTGCCACTCTCTCACCTCCAAGTCCTACTGCACCGGA
GAGGCCGGAAAGGTAAGCTTGGCGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig97823:266..442+

>mRNA_S-dermatodea_contig97823.17764.1 ID=mRNA_S-dermatodea_contig97823.17764.1|Name=mRNA_S-dermatodea_contig97823.17764.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at S-dermatodea_contig97823:266..442+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGCTCTCAGGCGGTGGCGAAGTCCAAGTACGAAGAAAACATATTCCCGGG
AAACCACACGACAGTGTGGGGGAGCTACTTCGACATGCGCTCAATGCGGT
GGGGCTTCGGCTGCTGCCACTCTCTCACCTCCAAGTCCTACTGCACCGGA
GAGGCCGGAAAGGTAAGCTTGGCGTGACGCTCTCAGGCGGTGGCGAAGTC
CAAGTACGAAGAAAACATATTCCCGGGAAACCACACGACAGTGTGGGGGA
GCTACTTCGACATGCGCTCAATGCGGTGGGGCTTCGGCTGCTGCCACTCT
CTCACCTCCAAGTCCTACTGCACCGGAGAGGCCGGAAAGGTAAGCTTGGC
GTGA
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