mRNA_S-dermatodea_contig9762.17748.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9762.17748.1
Unique NamemRNA_S-dermatodea_contig9762.17748.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig9762.17748.1 vs. uniprot
Match: D7FHP4_ECTSI (AP-1 complex subunit gamma n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHP4_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 5.010e-26
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 1
Query:    1 MSIKLRELIRAVRACKTAAEERGVVAQECARIRTAFKEEDIEFRNRNVAKLLFIHMLG 174
            MSI+LRELIRAVRACKTAAEERGVVAQECARIRTAFKEED EFRNRNVAKLLFIHMLG
Sbjct:    1 MSIRLRELIRAVRACKTAAEERGVVAQECARIRTAFKEEDTEFRNRNVAKLLFIHMLG 58          
BLAST of mRNA_S-dermatodea_contig9762.17748.1 vs. uniprot
Match: A0A482RW17_9ARCH (Adaptin_N domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RW17_9ARCH)

HSP 1 Score: 93.6 bits (231), Expect = 4.380e-22
Identity = 48/58 (82.76%), Postives = 53/58 (91.38%), Query Frame = 1
Query:    1 MSIKLRELIRAVRACKTAAEERGVVAQECARIRTAFKEEDIEFRNRNVAKLLFIHMLG 174
            MSIKLR+LIRAVRACKTAAEER V+++ECA IRTA KEED +FR RNVAKLLFIHMLG
Sbjct:    1 MSIKLRDLIRAVRACKTAAEERAVISKECALIRTAIKEEDEQFRQRNVAKLLFIHMLG 58          
BLAST of mRNA_S-dermatodea_contig9762.17748.1 vs. uniprot
Match: A0A812MR36_SYMPI (Ap1g1 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812MR36_SYMPI)

HSP 1 Score: 95.1 bits (235), Expect = 1.790e-21
Identity = 47/58 (81.03%), Postives = 55/58 (94.83%), Query Frame = 1
Query:    1 MSIKLRELIRAVRACKTAAEERGVVAQECARIRTAFKEEDIEFRNRNVAKLLFIHMLG 174
            MSIKLRELIR++RACKTAAEER V+A+ECA IRTAFKE+D +FR+RNVAKLLFIHM+G
Sbjct:    1 MSIKLRELIRSIRACKTAAEERAVIARECALIRTAFKEDDNQFRHRNVAKLLFIHMMG 58          
BLAST of mRNA_S-dermatodea_contig9762.17748.1 vs. uniprot
Match: A0A813L6Y0_POLGL (AP-1 complex subunit gamma n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813L6Y0_POLGL)

HSP 1 Score: 95.1 bits (235), Expect = 1.980e-21
Identity = 47/58 (81.03%), Postives = 55/58 (94.83%), Query Frame = 1
Query:    1 MSIKLRELIRAVRACKTAAEERGVVAQECARIRTAFKEEDIEFRNRNVAKLLFIHMLG 174
            MSIKLRELIR++RACKTAAEER V+A+ECA IRTAFKE+D +FR+RNVAKLLFIHM+G
Sbjct:    1 MSIKLRELIRSIRACKTAAEERAVIARECALIRTAFKEDDNQFRHRNVAKLLFIHMMG 58          
BLAST of mRNA_S-dermatodea_contig9762.17748.1 vs. uniprot
Match: A0A1Q9EJ89_SYMMI (AP-1 complex subunit gamma-1 n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9EJ89_SYMMI)

HSP 1 Score: 95.1 bits (235), Expect = 1.990e-21
Identity = 47/58 (81.03%), Postives = 55/58 (94.83%), Query Frame = 1
Query:    1 MSIKLRELIRAVRACKTAAEERGVVAQECARIRTAFKEEDIEFRNRNVAKLLFIHMLG 174
            MSIKLRELIR++RACKTAAEER V+A+ECA IRTAFKE+D +FR+RNVAKLLFIHM+G
Sbjct: 2401 MSIKLRELIRSIRACKTAAEERAVIARECALIRTAFKEDDNQFRHRNVAKLLFIHMMG 2458          
BLAST of mRNA_S-dermatodea_contig9762.17748.1 vs. uniprot
Match: A0A0G4ELK5_VITBC (AP-1 complex subunit gamma n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ELK5_VITBC)

HSP 1 Score: 94.7 bits (234), Expect = 2.700e-21
Identity = 48/58 (82.76%), Postives = 53/58 (91.38%), Query Frame = 1
Query:    1 MSIKLRELIRAVRACKTAAEERGVVAQECARIRTAFKEEDIEFRNRNVAKLLFIHMLG 174
            MSIKLRELIR +RACKTAAEER V+A+ECA IRTAFKEED  +R+RNVAKLLFIHMLG
Sbjct:    1 MSIKLRELIRNIRACKTAAEERAVIAKECAEIRTAFKEEDNHYRHRNVAKLLFIHMLG 58          
BLAST of mRNA_S-dermatodea_contig9762.17748.1 vs. uniprot
Match: A0A7S1F0P5_NOCSC (AP-1 complex subunit gamma n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1F0P5_NOCSC)

HSP 1 Score: 94.0 bits (232), Expect = 5.030e-21
Identity = 46/58 (79.31%), Postives = 55/58 (94.83%), Query Frame = 1
Query:    1 MSIKLRELIRAVRACKTAAEERGVVAQECARIRTAFKEEDIEFRNRNVAKLLFIHMLG 174
            MSIKLRELIR++R+CKTAAEER V+A+ECA IRTAFKE+D +FR+RNVAKLLFIHM+G
Sbjct:   20 MSIKLRELIRSIRSCKTAAEERSVIARECALIRTAFKEDDNQFRHRNVAKLLFIHMMG 77          
BLAST of mRNA_S-dermatodea_contig9762.17748.1 vs. uniprot
Match: A0A0G4HF14_9ALVE (Adaptin_N domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HF14_9ALVE)

HSP 1 Score: 88.6 bits (218), Expect = 9.700e-21
Identity = 44/58 (75.86%), Postives = 51/58 (87.93%), Query Frame = 1
Query:    1 MSIKLRELIRAVRACKTAAEERGVVAQECARIRTAFKEEDIEFRNRNVAKLLFIHMLG 174
            MS KLR+L+RAVR CKTAAEERGV+A+ECA IRT FK+E   +R+RNVAKLLFIHMLG
Sbjct:    1 MSQKLRDLVRAVRGCKTAAEERGVIAKECAMIRTTFKDESDSYRHRNVAKLLFIHMLG 58          
BLAST of mRNA_S-dermatodea_contig9762.17748.1 vs. uniprot
Match: A0A662XRJ5_9STRA (Adaptin_N domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XRJ5_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.670e-20
Identity = 44/58 (75.86%), Postives = 53/58 (91.38%), Query Frame = 1
Query:    1 MSIKLRELIRAVRACKTAAEERGVVAQECARIRTAFKEEDIEFRNRNVAKLLFIHMLG 174
            MS KLR+LIR+VRACKTAAEER V+A+E A IRTAFK++D ++R+RNVAKLLFIHMLG
Sbjct:    1 MSQKLRDLIRSVRACKTAAEERAVIAKESALIRTAFKDQDKQYRHRNVAKLLFIHMLG 58          
BLAST of mRNA_S-dermatodea_contig9762.17748.1 vs. uniprot
Match: A0A836CEJ3_9STRA (AP-1 complex subunit gamma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEJ3_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.750e-20
Identity = 48/58 (82.76%), Postives = 53/58 (91.38%), Query Frame = 1
Query:    1 MSIKLRELIRAVRACKTAAEERGVVAQECARIRTAFKEEDIEFRNRNVAKLLFIHMLG 174
            MSIKL+ELIRAVRACKTAA ER VV+QE A IRTAFKEE +E+RNRNVAKLLF+HMLG
Sbjct:    1 MSIKLKELIRAVRACKTAAAERSVVSQELALIRTAFKEEQLEYRNRNVAKLLFMHMLG 58          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9762.17748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHP4_ECTSI5.010e-2696.55AP-1 complex subunit gamma n=2 Tax=Ectocarpus TaxI... [more]
A0A482RW17_9ARCH4.380e-2282.76Adaptin_N domain-containing protein (Fragment) n=1... [more]
A0A812MR36_SYMPI1.790e-2181.03Ap1g1 protein n=1 Tax=Symbiodinium pilosum TaxID=2... [more]
A0A813L6Y0_POLGL1.980e-2181.03AP-1 complex subunit gamma n=2 Tax=Polarella glaci... [more]
A0A1Q9EJ89_SYMMI1.990e-2181.03AP-1 complex subunit gamma-1 n=2 Tax=Symbiodinium ... [more]
A0A0G4ELK5_VITBC2.700e-2182.76AP-1 complex subunit gamma n=2 Tax=Vitrella brassi... [more]
A0A7S1F0P5_NOCSC5.030e-2179.31AP-1 complex subunit gamma n=1 Tax=Noctiluca scint... [more]
A0A0G4HF14_9ALVE9.700e-2175.86Adaptin_N domain-containing protein n=1 Tax=Chrome... [more]
A0A662XRJ5_9STRA1.670e-2075.86Adaptin_N domain-containing protein n=1 Tax=Nothop... [more]
A0A836CEJ3_9STRA1.750e-2082.76AP-1 complex subunit gamma n=1 Tax=Tribonema minus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9762contigS-dermatodea_contig9762:6578..6751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue2.6e-22
Seed eggNOG ortholog2880.D7FHP4
KEGG koko:K11279,ko:K12391
KEGG Pathwayko04142,map04142
EggNOG free text desc.intracellular protein transport
EggNOG OGsCOG4354@1,KOG1062@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size174
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925429.968831-CDS-S-dermatodea_contig9762:6577..67511622925429.968831-CDS-S-dermatodea_contig9762:6577..6751Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9762 6578..6751 +
1694079928.1509385-CDS-S-dermatodea_contig9762:6577..67511694079928.1509385-CDS-S-dermatodea_contig9762:6577..6751Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9762 6578..6751 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9762.17748.1prot_S-dermatodea_contig9762.17748.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9762 6578..6751 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9762.17748.1

>prot_S-dermatodea_contig9762.17748.1 ID=prot_S-dermatodea_contig9762.17748.1|Name=mRNA_S-dermatodea_contig9762.17748.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=58bp
MSIKLRELIRAVRACKTAAEERGVVAQECARIRTAFKEEDIEFRNRNVAK
LLFIHMLG
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mRNA from alignment at S-dermatodea_contig9762:6578..6751+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9762.17748.1 ID=mRNA_S-dermatodea_contig9762.17748.1|Name=mRNA_S-dermatodea_contig9762.17748.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=174bp|location=Sequence derived from alignment at S-dermatodea_contig9762:6578..6751+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCGATAAAGCTACGGGAGCTCATCCGGGCGGTGCGCGCCTGCAAGAC GGCGGCGGAGGAACGAGGAGTCGTGGCGCAAGAGTGTGCTCGCATCCGGA CCGCTTTCAAGGAAGAAGACATCGAGTTCAGGAACAGGAATGTTGCTAAG CTCCTGTTCATCCATATGCTTGGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig9762:6578..6751+

>mRNA_S-dermatodea_contig9762.17748.1 ID=mRNA_S-dermatodea_contig9762.17748.1|Name=mRNA_S-dermatodea_contig9762.17748.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at S-dermatodea_contig9762:6578..6751+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCGATAAAGCTACGGGAGCTCATCCGGGCGGTGCGCGCCTGCAAGAC
GGCGGCGGAGGAACGAGGAGTCGTGGCGCAAGAGTGTGCTCGCATCCGGA
CCGCTTTCAAGGAAGAAGACATCGAGTTCAGGAACAGGAATGTTGCTAAG
CTCCTGTTCATCCATATGCTTGGTATGTCGATAAAGCTACGGGAGCTCAT
CCGGGCGGTGCGCGCCTGCAAGACGGCGGCGGAGGAACGAGGAGTCGTGG
CGCAAGAGTGTGCTCGCATCCGGACCGCTTTCAAGGAAGAAGACATCGAG
TTCAGGAACAGGAATGTTGCTAAGCTCCTGTTCATCCATATGCTTGGT
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