mRNA_S-dermatodea_contig97617.17747.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig97617.17747.1
Unique NamemRNA_S-dermatodea_contig97617.17747.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig97617.17747.1 vs. uniprot
Match: A0A7J6SJT1_PEROL (DNA-directed DNA polymerase alpha catalytic subunit pol1 (Fragment) n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6SJT1_PEROL)

HSP 1 Score: 90.5 bits (223), Expect = 8.250e-22
Identity = 41/50 (82.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    1 GPRRKKAAYAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMN 150
            GPRRKKAAYAGGLVLEPK GLYD+ +LLLDFNSLYPS+I+EYN+CFTT++
Sbjct:  111 GPRRKKAAYAGGLVLEPKAGLYDKLVLLLDFNSLYPSIIREYNICFTTVD 160
[Close]
BLAST of mRNA_S-dermatodea_contig97617.17747.1 vs. uniprot
Match: A0A0L0DRB9_THETB (DNA polymerase n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DRB9_THETB)

HSP 1 Score: 94.0 bits (232), Expect = 3.540e-21
Identity = 43/49 (87.76%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:    1 GPRRKKAAYAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTM 147
            GPRRKKAAYAGGLVLEPK+G YD++ILLLDFNSLYPS+IQEYNLCFTT+
Sbjct:  940 GPRRKKAAYAGGLVLEPKRGFYDKFILLLDFNSLYPSIIQEYNLCFTTV 988
[Close]
BLAST of mRNA_S-dermatodea_contig97617.17747.1 vs. uniprot
Match: A0A8J8T8Z7_HALGN (DNA polymerase n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8T8Z7_HALGN)

HSP 1 Score: 91.3 bits (225), Expect = 3.140e-20
Identity = 42/50 (84.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 GPRRKKAAYAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMN 150
            GP+RKKAAYAGGLV+EPK G YD  ILLLDFNSLYPS+IQEYNLCFTT+N
Sbjct:  827 GPKRKKAAYAGGLVIEPKAGFYDSIILLLDFNSLYPSIIQEYNLCFTTVN 876
[Close]
BLAST of mRNA_S-dermatodea_contig97617.17747.1 vs. uniprot
Match: A0A8J6CAH7_DIALT (DNA polymerase n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CAH7_DIALT)

HSP 1 Score: 90.9 bits (224), Expect = 4.280e-20
Identity = 41/48 (85.42%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:    4 PRRKKAAYAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTM 147
            P RKK AYAGGLVLEPKKGLYD Y+LLLDFNSLYPS++QEYNLCFTT+
Sbjct:  980 PARKKPAYAGGLVLEPKKGLYDHYVLLLDFNSLYPSIVQEYNLCFTTV 1027
[Close]
BLAST of mRNA_S-dermatodea_contig97617.17747.1 vs. uniprot
Match: D7FI10_ECTSI (DNA polymerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI10_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 4.280e-20
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:   22 AYAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMN 150
            AYAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMN
Sbjct:  957 AYAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMN 999
[Close]
BLAST of mRNA_S-dermatodea_contig97617.17747.1 vs. uniprot
Match: UPI0006266BE4 (DNA polymerase alpha catalytic subunit n=1 Tax=Orussus abietinus TaxID=222816 RepID=UPI0006266BE4)

HSP 1 Score: 90.9 bits (224), Expect = 4.280e-20
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 1 
Query:    4 PRRKKAAYAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTM 147
            PRRKKAAYAGGLVLEPKKG YD+ ILL+DFNSLYPS+IQEYNLCFTT+
Sbjct:  865 PRRKKAAYAGGLVLEPKKGFYDKLILLMDFNSLYPSIIQEYNLCFTTV 912
[Close]
BLAST of mRNA_S-dermatodea_contig97617.17747.1 vs. uniprot
Match: A0A7J6PM48_PEROL (DNA polymerase n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6PM48_PEROL)

HSP 1 Score: 90.5 bits (223), Expect = 5.850e-20
Identity = 41/50 (82.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    1 GPRRKKAAYAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMN 150
            GPRRKKAAYAGGLVLEPK GLYD+ +LLLDFNSLYPS+I+EYN+CFTT++
Sbjct: 1033 GPRRKKAAYAGGLVLEPKAGLYDKLVLLLDFNSLYPSIIREYNICFTTVD 1082
[Close]
BLAST of mRNA_S-dermatodea_contig97617.17747.1 vs. uniprot
Match: A0A7J6MSZ3_PEROL (DNA polymerase n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6MSZ3_PEROL)

HSP 1 Score: 90.5 bits (223), Expect = 5.850e-20
Identity = 41/50 (82.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    1 GPRRKKAAYAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMN 150
            GPRRKKAAYAGGLVLEPK GLYD+ +LLLDFNSLYPS+I+EYN+CFTT++
Sbjct:  892 GPRRKKAAYAGGLVLEPKAGLYDKLVLLLDFNSLYPSIIREYNICFTTVD 941
[Close]
BLAST of mRNA_S-dermatodea_contig97617.17747.1 vs. uniprot
Match: A0A7J6LTY8_PERCH (DNA polymerase n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6LTY8_PERCH)

HSP 1 Score: 90.5 bits (223), Expect = 5.850e-20
Identity = 41/50 (82.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    1 GPRRKKAAYAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMN 150
            GPRRKKAAYAGGLVLEPK GLYD+ +LLLDFNSLYPS+I+EYN+CFTT++
Sbjct:  882 GPRRKKAAYAGGLVLEPKAGLYDKLVLLLDFNSLYPSIIREYNICFTTVD 931
[Close]
BLAST of mRNA_S-dermatodea_contig97617.17747.1 vs. uniprot
Match: A0A7J6QV35_PEROL (DNA-directed DNA polymerase n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6QV35_PEROL)

HSP 1 Score: 90.5 bits (223), Expect = 5.850e-20
Identity = 41/50 (82.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    1 GPRRKKAAYAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMN 150
            GPRRKKAAYAGGLVLEPK GLYD+ +LLLDFNSLYPS+I+EYN+CFTT++
Sbjct:  889 GPRRKKAAYAGGLVLEPKAGLYDKLVLLLDFNSLYPSIIREYNICFTTVD 938
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig97617.17747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7J6SJT1_PEROL8.250e-2282.00DNA-directed DNA polymerase alpha catalytic subuni... [more]
A0A0L0DRB9_THETB3.540e-2187.76DNA polymerase n=1 Tax=Thecamonas trahens ATCC 500... [more]
A0A8J8T8Z7_HALGN3.140e-2084.00DNA polymerase n=1 Tax=Halteria grandinella TaxID=... [more]
A0A8J6CAH7_DIALT4.280e-2085.42DNA polymerase n=2 Tax=Diacronema lutheri TaxID=20... [more]
D7FI10_ECTSI4.280e-20100.00DNA polymerase n=2 Tax=Ectocarpus TaxID=2879 RepID... [more]
UPI0006266BE44.280e-2087.50DNA polymerase alpha catalytic subunit n=1 Tax=Oru... [more]
A0A7J6PM48_PEROL5.850e-2082.00DNA polymerase n=1 Tax=Perkinsus olseni TaxID=3259... [more]
A0A7J6MSZ3_PEROL5.850e-2082.00DNA polymerase n=2 Tax=Perkinsus olseni TaxID=3259... [more]
A0A7J6LTY8_PERCH5.850e-2082.00DNA polymerase n=1 Tax=Perkinsus chesapeaki TaxID=... [more]
A0A7J6QV35_PEROL5.850e-2082.00DNA-directed DNA polymerase n=2 Tax=Perkinsus olse... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig97617contigS-dermatodea_contig97617:278..427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.0
Seed ortholog evalue2.2e-17
Seed eggNOG ortholog529818.AMSG_01649T0
Preferred namePOLA1
KEGG rclassRC02795
KEGG koko:K02320
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,map00230,map00240,map01100,map03030
KEGG ModuleM00261
GOsGO:0000003,GO:0000082,GO:0000083,GO:0000166,GO:0000228,GO:0000278,GO:0000428,GO:0000723,GO:0000726,GO:0000731,GO:0000734,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003688,GO:0003690,GO:0003697,GO:0003824,GO:0003887,GO:0003896,GO:0003899,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005657,GO:0005658,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006269,GO:0006270,GO:0006271,GO:0006272,GO:0006273,GO:0006278,GO:0006279,GO:0006281,GO:0006302,GO:0006303,GO:0006310,GO:0006312,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007275,GO:0007530,GO:0007531,GO:0007533,GO:0007534,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009653,GO:0009889,GO:0009965,GO:0009987,GO:0010016,GO:0010468,GO:0010556,GO:0012505,GO:0016043,GO:0016070,GO:0016363,GO:0016740,GO:0016772,GO:0016779,GO:0017076,GO:0018130,GO:0019103,GO:0019219,GO:0019222,GO:0019438,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0022402,GO:0022413,GO:0022414,GO:0022616,GO:0030154,GO:0030880,GO:0030894,GO:0031323,GO:0031326,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032200,GO:0032201,GO:0032501,GO:0032502,GO:0032505,GO:0032774,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0034061,GO:0034062,GO:0034399,GO:0034641,GO:0034645,GO:0034654,GO:0035822,GO:0035861,GO:0036094,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043596,GO:0043601,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044786,GO:0044843,GO:0045165,GO:0046483,GO:0046982,GO:0046983,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051276,GO:0051321,GO:0051716,GO:0055029,GO:0060249,GO:0060255,GO:0061695,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090734,GO:0097159,GO:0097747,GO:0098687,GO:0099402,GO:0140097,GO:0140098,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902292,GO:1902295,GO:1902315,GO:1902318,GO:1902494,GO:1902969,GO:1902975,GO:1902981,GO:1903046,GO:1903047,GO:1903506,GO:1905392,GO:1990234,GO:1990837,GO:2000112,GO:2001141
EggNOG free text desc.leading strand elongation
EggNOG OGsCOG0417@1,KOG0970@2759
EC2.7.7.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925429.9328434-CDS-S-dermatodea_contig97617:277..4271622925429.9328434-CDS-S-dermatodea_contig97617:277..427Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig97617 278..427 +
1694079928.138612-CDS-S-dermatodea_contig97617:277..4271694079928.138612-CDS-S-dermatodea_contig97617:277..427Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig97617 278..427 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig97617.17747.1prot_S-dermatodea_contig97617.17747.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig97617 278..427 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig97617.17747.1

>prot_S-dermatodea_contig97617.17747.1 ID=prot_S-dermatodea_contig97617.17747.1|Name=mRNA_S-dermatodea_contig97617.17747.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=50bp
GPRRKKAAYAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMN
back to top

mRNA from alignment at S-dermatodea_contig97617:278..427+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig97617.17747.1 ID=mRNA_S-dermatodea_contig97617.17747.1|Name=mRNA_S-dermatodea_contig97617.17747.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=150bp|location=Sequence derived from alignment at S-dermatodea_contig97617:278..427+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCCCGCGTCGCAAGAAAGCGGCCTACGCGGGTGGCCTGGTGTTGGAACC
GAAGAAGGGCCTGTACGACGAGTACATCCTGCTGCTCGACTTCAACAGCC
TCTACCCTTCACTGATCCAGGAGTACAACCTGTGCTTCACCACCATGAAC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig97617:278..427+

>mRNA_S-dermatodea_contig97617.17747.1 ID=mRNA_S-dermatodea_contig97617.17747.1|Name=mRNA_S-dermatodea_contig97617.17747.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=300bp|location=Sequence derived from alignment at S-dermatodea_contig97617:278..427+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCCCGCGTCGCAAGAAAGCGGCCTACGCGGGTGGCCTGGTGTTGGAACC
GAAGAAGGGCCTGTACGACGAGTACATCCTGCTGCTCGACTTCAACAGCC
TCTACCCTTCACTGATCCAGGAGTACAACCTGTGCTTCACCACCATGAAC
GGCCCGCGTCGCAAGAAAGCGGCCTACGCGGGTGGCCTGGTGTTGGAACC
GAAGAAGGGCCTGTACGACGAGTACATCCTGCTGCTCGACTTCAACAGCC
TCTACCCTTCACTGATCCAGGAGTACAACCTGTGCTTCACCACCATGAAC
back to top