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Homology
BLAST of mRNA_S-dermatodea_contig9707.17708.1 vs. uniprot
Match: A0A6H5KU31_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU31_9PHAE) HSP 1 Score: 253 bits (645), Expect = 2.840e-74 Identity = 120/173 (69.36%), Postives = 150/173 (86.71%), Query Frame = 2
Query: 2 ETPKSFMEERSSKRVVHFMGRSEREGVLLPEGSCTQDGRGPGVTVELPKTASHREILETLCNRLEMVENPLLLRVSAMNVSGKPQSFPIRVHLSDLDLPQHGLHKVLEIGAGAHHRHTLIFEMAPFPVDELTHSVTLVEAFSTDAVLKRHCLAKMEEHPVMILARKRTRARRE 520
+TPK+F+E+RS++RVVHFMGR+ER+GVLLPEGS T+DGR PGV+VELP+TASHREILETL RLE+V++PLLLR+SAM GKPQSFP RVH+SDLDLPQ LHK+L++ GAHH HT++FE+ PFP+++LT + TLVEA+S+DAVLK HCLA+MEE P M LAR+R AR E
Sbjct: 1262 DTPKTFLEQRSAQRVVHFMGRTERDGVLLPEGSMTEDGRMPGVSVELPRTASHREILETLSRRLELVDDPLLLRISAMTTGGKPQSFPTRVHMSDLDLPQFALHKILDVNQGAHHHHTILFELLPFPMNQLTAATTLVEAYSSDAVLKTHCLARMEEEPFMKLARRRKTARLE 1434
BLAST of mRNA_S-dermatodea_contig9707.17708.1 vs. uniprot
Match: D8LL31_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL31_ECTSI) HSP 1 Score: 235 bits (600), Expect = 3.050e-68 Identity = 109/163 (66.87%), Postives = 139/163 (85.28%), Query Frame = 2
Query: 2 ETPKSFMEERSSKRVVHFMGRSEREGVLLPEGSCTQDGRGPGVTVELPKTASHREILETLCNRLEMVENPLLLRVSAMNVSGKPQSFPIRVHLSDLDLPQHGLHKVLEIGAGAHHRHTLIFEMAPFPVDELTHSVTLVEAFSTDAVLKRHCLAKMEEHPVMIL 490
ETPK+F+E+RS++RVVHFMGR++R+GVLLPEGS TQDGR PGV+VELP+TASHREILETL RLE+V++PLLLR+SAM GKPQSFP RVH+SDLDLPQ LHK+L++ GAHH HT++FE+ PFP+++LT + TLVEA+S+DAVLK HCL H +++
Sbjct: 1243 ETPKTFLEQRSAQRVVHFMGRTDRDGVLLPEGSMTQDGRMPGVSVELPRTASHREILETLSRRLELVDDPLLLRISAMTTGGKPQSFPTRVHMSDLDLPQFALHKILDVNQGAHHHHTILFELLPFPMNQLTAATTLVEAYSSDAVLKTHCLYAARLHGNLVI 1405
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 224.9 |
| Seed ortholog evalue | 3.1e-56 |
| Seed eggNOG ortholog | 2880.D8LL31 |
| KEGG ko | ko:K11838 |
| KEGG Pathway | ko04068,ko05168,ko05169,ko05203,map04068,map05168,map05169,map05203 |
| EggNOG free text desc. | ubiquitinyl hydrolase activity |
| EggNOG OGs | COG5077@1,KOG1863@2759 |
| EC | 3.4.19.12 |
| COG Functional cat. | O |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01000,ko01002,ko04121 |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 585 |
| Cds size | 564 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig9707.17708.1 >prot_S-dermatodea_contig9707.17708.1 ID=prot_S-dermatodea_contig9707.17708.1|Name=mRNA_S-dermatodea_contig9707.17708.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=188bp
MEERSSKRVVHFMGRSEREGVLLPEGSCTQDGRGPGVTVELPKTASHREI LETLCNRLEMVENPLLLRVSAMNVSGKPQSFPIRVHLSDLDLPQHGLHKV LEIGAGAHHRHTLIFEMAPFPVDELTHSVTLVEAFSTDAVLKRHCLAKME EHPVMILARKRTRARREAAERDAAAVAVAGAVEGAGNG back to topmRNA from alignment at S-dermatodea_contig9707:1499..7894- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig9707.17708.1 ID=mRNA_S-dermatodea_contig9707.17708.1|Name=mRNA_S-dermatodea_contig9707.17708.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6396bp|location=Sequence derived from alignment at S-dermatodea_contig9707:1499..7894- (Saccorhiza dermatodea SderLu1190fm monoicous) GGAGACGCCTAAGTCGTTCATGGAGGAAAGGTCGTCGAAGCGCGTTGTGC
ACTTCATGGGCCGGTCGGAGCGCGAGGGAGTGCTGCTGCCAGAAGGGTCG
TGCACGCAGGACGGGCGAGGGCCTGGGGTAACGGTCGAGCTGCCGAAGAC
GGCGTCTCACAGAGAGGTCAGATTGATTGTGCCTGCCTGCCTGCCTGCCT
GCCTGCCTGTGGACTCTTTTATCGTATCAAAAGTGATAAAGCGAACGCCG
CGCAGAACGTTGAAACCCGCAGCGATAATACATCCTTGATGAGTATGCGT
GTATAGAGTGTATACTGATGCTTTTAACCGGTTGCAGCTGTTGGATGACG
CTGTAAAATATGTATCGGTTTGATTTTGTTAGATTTTAGCTGGTTCATGA
CGAGGATAAGGTATACCGTGGTGGAGTGGAGTTTATTCGTGGTTGCCTGC
GCGCGTGGACGCTCATCACATCAAGCTGTGGAAAATGCGAACGCTGCGCA
GATCCTGGAAACCCTGTGCAACCGCCTGGAGATGGTGGAAAACCCCCTCC
TGCTGAGAGTCTCGGCCATGAACGTCAGCGGGAAACCGCAGGTGAGAGAC
GGAGTGGATGAAAAGGCGGAGATTGTAGTGTAGTGTGAGTGGACGTGTAT
GTGTAGGTGTGATTTTGGGGCAAGAGTACGATCAATCATATCAATCATAT
CAATCATCTCAATCATATCAATCATATCAATCATATCAATCATATCAATC
ATCGATTGTAGCTATAATACACGTTCATCATTTATGAAGGGCGGGTACAA
TCACGTGCACAGCCTATACGTGTATGTATTCAAAGGTCGTGATTGTAGTT
TACGTGTAAGTGTAGGTGTAATTTTGGGGACGATTGATTGCTTGATTGAT
TGATTGATTGATTAATTGATTGATTTATTGATTTGGACACGTATTGTATA
GCCGATCGGCTTAATCCGACCGACCCGACTTTTTGTGCTCCCTGGGAGCC
TCGAAGCAACATGCTGGCTTGTGAGACAAACACTGCTGTGCGTTCGTAAT
CTACACGGGTAACACGGGTACAGTATTAATAGCATTAATACTGTAGTAGT
AGTATTAATAGTAGTATTACTACTATTAATAGTAGGTATCAATCGTAGTA
GCAATAATAGTAGTATTCACAGTAGTAGTATTCATAGTAGTAGTATTAAT
GGTAGTATTATTAATAGTCGTAGAGGTAGACAGTAGTCAGGAGCAAATGT
GCCAAGTGGCATGCCCGACAAAATAAAGCAGAAACCAAAATCGTCTGTGG
CTTTCTTATACAAGTACAAGTACAAGATATATCTGCGATCGATCTTCCGG
CCTGAAATGTCATAAAATAAAAAAACTAAACGATTCTTACAGGGTGTTCG
GGCCAAGTTTAAAACAAAACAATATCAACATGCCTGAGTACTGATTTATG
GGTAAAGTGCCTCCTCCGTTACACTATCTCCCGCCTTTAGATTTTAGATT
TCACATTTTAGATTTTAATTTTTGTGTTCAAGGAGACGTACTGGAGAAGC
CGATGTCATAGAATACATCTCGTCTTAGAAGGGGTTGTTCCAAACGTTTT
TTTTGTCATTTTGACTTGCCGGCCCTTGCCTTGTTCCATCTAATGTATTA
ATAATAGAATAGAATAGCGTGGGACTTGGCAGCACGTCAGACGGCGGTGC
GGTGCAGTTTTTGTGCTTCTTCGGTACTATACCATAGTAAGTAACAGGGA
CGGTACAATATATAGTAGAAGTAGAGTACTGATTAGTTATTTTCTCCTTG
ACTCTTTGCGTGTCAGACCACAAGTCGGGTCGAATTGAGCCGATCGGCTA
TACGTGTGCAAAAAAACAAAACAAAAACAAAATAGTATGATAGTGGGTAG
ACACTCTAGGCTATATAATATGCCCGTGAGGTGTGCGAACGGGCGAACCG
GCGAAAGATCCGAAAAAGCTTCAAAACATTTCTTTGTAAGCCCTATCGAT
CTGGCATCAAGATTTCGACTCAAAAATCCCTATCGATTTAGCATCAAAAC
AGTAATCTGTAAGCCCTATCGATTTGGCATCAAGATTTCGACTCTAAAAT
CCCTACAAGTATCGATTTACCATGAAGGCTTCATTCACTCTACACTATCA
TACTCCAACTAAAAAAGCGTGCAAAGCGCTGGTATTAATTAGTAAAAATA
TTTTACGCAGCAGCAGCAGCAGTTGTTGTGTAGGTTTGGACCCAAGCAGT
AACGTAAGTAACAGGTACCACTGATTTTGATGTGTGGAAATATATTACGC
AGCTTACTAGCTTCAGACAGTATTGCGGGGAACCATAGGTAGCAGGTCCA
ATTTTGCCACAAGTCTCAACCTAGAAAGATGACACTGTTAATATTAATGT
TAATAGGCCGGAATTATCGAGATTTCAAGGTCGATGTTCATGAATATCAG
AGTCTTCCTCGGGTAACGCTTTTTTTTTCGGACACAGACGGAGCGGTAAT
GCGATATGACGGTAATTTTTCGACGGTAGACGGGTTTCTCGTTTTTTTAC
GGTAACGGCTTTGACGGTCACGGTAAATCTCAAATATGACGGTAAACCGT
AATATTACCGTAACCGTCCTCCAGGGCGGTAATTTTTTTTCGTCGGTAGA
ATTACCGAGGAAGACTCTGATGAGTATGGCCATAATCTCGTGGTTTTGTT
TTTCGTGAGGTTTTTGTTGTTGTTTTTGGGGGTATTAATGGTCGGAATAG
TTGGGTATTGTATTATTGGCCATGATATTTGGACCTGTTAAAGCTAACTG
TGTTCCTCCGTGTTAGTACATAGTACATAGAGCTAGTAGAGGTCGGATTA
TTGGCGAAGACTCTAACTCTAATCTGTAAGCTGTAGCCACGTCGTTCTAT
GGTATTGATATTATTTGTTTGATCCCTGCCGCGTTGCGACTGGCCGTAGA
ACAATAAGGACCTGTAGAGAGGCGAGGGAGCAGTGTTTGAGTCCGAGTTC
TTCTTCTAGCGTTTTTTTCCTACATCTGAGATACTCTTTCTTATTTCTTG
TATTATACCATAGTAAGTACCAGGGACGGTACGGTGTATTTGTAAGTAGA
TTTCTGATTAGTTAATTATCTCCTTGACTCTCTTTTCGTGTCTGACCACA
AGTCGGGTTGGATTAAGCCGATCGGCTATACGTGTGCAAATCAATCAATC
CATCAATCAATCGATCAATCAATCAATAGGTCTCGGTTGGTTTTGGTATC
GTCATGTATGTGGATGCCTGTTTCGTTTTGGTGAGGTCTTCCGTGTGTAC
CTTTCTGTACCTCTTTTGCGACTGTACCTCTTTTGCGACTGTATCTCTTT
TGGGACTGTATCTCTTTTGCGACACGAGAGGGCGACGTGCTGCATGTGTG
ATAACCAATCAAAATCAACAAATCAATCAATCAATCAAACAACTCGCGTT
GCTTCTTACTGATTTTTTGTAAATTGTACATACAAAAAAATCCGTAAAAC
GGTTGACTCGCAACTTTTTTGCTACTTTTTACAAATGTCAGATTTTTCGG
CGAGAAATTCGTTTTGGGTTTTTCGTGTCTACAAACGTAAGAGTCGGCGG
TATCGTAGAGGATGTCTCATTCTTATTTACCCTTTGTACTTTACGTTTTT
GTTTTTTGTTTAACGAATGTTCCGCGTTTAGGTTTCCTTTTATTTGCTTG
ATCTTGTGGCCGCGCACGGCTTTTGCTGGATTTCGAGATCAGTGTTGTAA
GTACACGTGAGACCATCAGTTGCAATGTGACACTATCGTCATCACTACAT
CACTGTCACCATGACGTCATCATCATCATTATCTTTTATTAGTTAATGCC
GCTTCGCTTCGCACATTTTTTAATAGCGACTGTAGAGTTGATCCTTGATG
CCGAATTGCCTACACAACTCGTGATGCCAAATGTCATACAATAGGGATTT
TAGAGTGGCACGTTACAGAGGAGTAATTTGTGCCAACGCACGCACACCTC
ACGGGCGTGTCATAATAGCTGTGGCAACCAAATAGTAATAGTGAATTGAA
ACTTTTCTCCGACGTCATTAGTCATGATGTACCAGGGACGGTACGGTGTA
TAGTAGAAGTAGAGTTGTGATTAGTTCTTATTTTGCTCCTTGACTCTTTG
CGTGTCTGACCACAAGTCGGGTCGGATTAAGCCGATCGGCTATACGTGTG
CAAATCAAATCAAATCAAATCAAATCAAAATCAACTAAATCATCATCCGC
GCGCTGTTGTTGGTATTGCTGTTGTGTTTTGTTTTTTCTTCCTATTCTTT
CGAGCAGTCCTTCCCCATCAGGGTCCACCTCAGCGACCTCGACCTGCCTC
AGCACGGGCTTCACAAGGTCCTCGAGATCGGCGCCGGCGCTCACCACAGG
CACACCCTCATCTTCGAGGTACTGTATCTTACTGTACAACCTTTATCATT
TTACGGGTGGAAACACATCTGCCCCCACCCCTGATTTTGCTCTCGGCTGC
GAGAAGGACACGGGCGTGGCGGCGTCGCTGACCCGGTTTCTGGTTTCTGG
TACAGTATGTATCTTTCGTTGTGTCTTGGTTCAATGGGGGTATAATCAAT
TCCCCGTCCTCCCGAGGACGCGGGGCCAATGGCCCATCATCTTTTAGGCA
TGCCGAGCTTTAGGATGCGTCGCAAACGCTAGGGCGATGCTAGCGACTGG
TATCATCTTGATTAGTGAATGGCGCTTTAGAGTACCATGTCCAACACTAT
TTCCTGTACGATTCTGTACCCAAAAATGCGATGCCAAACAACTTAATGTT
TGTGTAAGCACCAAACGACTTGATTTTAGAGTTGAGCGACCACGCACACC
GCACGGGCGTATTCGCCGTGGCTATATGATACCTACTACAAGTAGTCCTT
GTGAAACGCGGCCGCCTGGCCTACTATTAATACTAATACTACTCGAGGAT
GGGTGGTGATTCTCGTGCGAATATCGCATCATACCTTTTTTGCGCCACGT
GTGCTCTACTGACTGTACCTTTTTTGTTACGTGTACCTTTTTTGTCTTGG
GGTGTACAGCAGTACCTTGTACCTGATTTATGCACAAGTCGTTTACCCTA
TTTTGTGTCTTTCTAACGTGTGCGTGCTGTACGTACCCCCCCCCCCCCCT
TTACAGATGGCGCCTTTCCCGGTGGACGAGCTGACTCATTCCGTCACCCT
GGTGGAGGCGTTCTCCACCGACGCCGTTCTTAAGCGACACTGCCTGGTAC
GATCGAAACCCCCTGTAACTATGGTCAAGGTTAGGGTTAGGATTAGGTAG
CTATGATATCGGCTCTCGGTTGTCGATCCTTGTCAGCGTGTTGGGAACAC
CGATAACGTGCGGACGATTCCTTCGTGGCTCGTGGGTGCTGTTGGTTACC
CTGGTGGTTGAGGGGGTGGAGTGGGGGGGGTGCCCTAAAATAGTGATAAC
CCATTCCATCTCTCCCCCCCCCCCCGACACGGACGTACGTACATACAATA
GCTTGCCTTCGAGTTCCATCGCGCAAAGGGCTTACAACACGTTTTTTTGT
TCGTCCTGGTATTTTCCGATTTTTACACTACGCTGTTGGGACCGAGTCAG
ACCGGTTTTGTTTTGCGACCATATTTTCTCGTTATAGCTCTGCTGTATGT
ACCCGCATCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGGCCGTCGCCCTGAGTCTACCCTCAGAGCGATCGACCGCTTGT
GGGGTAAAAATGAACTTTGTTAATAGTATATTCGAAGTATCCTAATTAAT
TAATACCGCTTTGCACGTTTTTTTTTATTAGCGATTTAGAGATGATCTTT
GGCGCCGAATTTTCCTTTTGGACAAGTATACACTTGGTGATGCCAAGAAC
GGCATAGGGATTTTAGAGTGGTGAATTAAATGAAGCCTTACAGAGAGAGT
ACAGCAGTAATTTGTAAGTTGTGCCAACGTTCACGCCTCATGGGCGTGTA
GCGGTGGCTACCCGCTACTGTACAGTATGTCATACCAGGTATACCACAAG
GGTAAAAAAAAAAAAAAAAAACAACAACAACAACGACCAACCAAACTACA
AACTACCGCTGAACTCTATAAGCTCTGTCGCGCGGGGGAAGACTCGTGTA
TGTCCATTTATCTGTCCATCTATCTTCTGACGCCCCCCTGGGCGGGCGCG
CATGAGTTTCGCGGCAACGTCGTCGACCGCCAAAATCTTACCGGCTGGGT
GTAATTTCCCGTTACGGTAGGCAAAAATGGAGGAGCATCCCGTCATGATC
CTCGCCAGGAAGCGAACACGAGCTCGGCGGGAAGCGGCGGAGCGAGATGC
AGCAGCGGTAGCGGTAGCGGGAGCAGTGGAAGGGGCCGGAAATGGC back to topCoding sequence (CDS) from alignment at S-dermatodea_contig9707:1499..7894- >mRNA_S-dermatodea_contig9707.17708.1 ID=mRNA_S-dermatodea_contig9707.17708.1|Name=mRNA_S-dermatodea_contig9707.17708.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1128bp|location=Sequence derived from alignment at S-dermatodea_contig9707:1499..7894- (Saccorhiza dermatodea SderLu1190fm monoicous) ATGGAGGAAAGGTCGTCGAAGCGCGTTGTGCACTTCATGGGCCGGTCGGA GCGCGAGGGAGTGCTGCTGCCAGAAGGGTCGTGCACGCAGGACGGGCGAG GGCCTGGGGTAACGGTCGAGCTGCCGAAGACGGCGTCTCACAGAGAGATG GAGGAAAGGTCGTCGAAGCGCGTTGTGCACTTCATGGGCCGGTCGGAGCG CGAGGGAGTGCTGCTGCCAGAAGGGTCGTGCACGCAGGACGGGCGAGGGC CTGGGGTAACGGTCGAGCTGCCGAAGACGGCGTCTCACAGAGAGATCCTG GAAACCCTGTGCAACCGCCTGGAGATGGTGGAAAACCCCCTCCTGCTGAG AGTCTCGGCCATGAACGTCAGCGGGAAACCGCAGATCCTGGAAACCCTGT GCAACCGCCTGGAGATGGTGGAAAACCCCCTCCTGCTGAGAGTCTCGGCC ATGAACGTCAGCGGGAAACCGCAGTCCTTCCCCATCAGGGTCCACCTCAG CGACCTCGACCTGCCTCAGCACGGGCTTCACAAGGTCCTCGAGATCGGCG CCGGCGCTCACCACAGGCACACCCTCATCTTCGAGTCCTTCCCCATCAGG GTCCACCTCAGCGACCTCGACCTGCCTCAGCACGGGCTTCACAAGGTCCT CGAGATCGGCGCCGGCGCTCACCACAGGCACACCCTCATCTTCGAGATGG CGCCTTTCCCGGTGGACGAGCTGACTCATTCCGTCACCCTGGTGGAGGCG TTCTCCACCGACGCCGTTCTTAAGCGACACTGCCTGATGGCGCCTTTCCC GGTGGACGAGCTGACTCATTCCGTCACCCTGGTGGAGGCGTTCTCCACCG ACGCCGTTCTTAAGCGACACTGCCTGGCAAAAATGGAGGAGCATCCCGTC ATGATCCTCGCCAGGAAGCGAACACGAGCTCGGCGGGAAGCGGCGGAGCG AGATGCAGCAGCGGTAGCGGTAGCGGGAGCAGTGGAAGGGGCCGGAAATG GCGCAAAAATGGAGGAGCATCCCGTCATGATCCTCGCCAGGAAGCGAACA CGAGCTCGGCGGGAAGCGGCGGAGCGAGATGCAGCAGCGGTAGCGGTAGC GGGAGCAGTGGAAGGGGCCGGAAATGGC back to top
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