mRNA_S-dermatodea_contig9705.17707.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9705.17707.1
Unique NamemRNA_S-dermatodea_contig9705.17707.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig9705.17707.1 vs. uniprot
Match: D7FWE2_ECTSI (WD40 repeat protein flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWE2_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 1.660e-35
Identity = 62/64 (96.88%), Postives = 64/64 (100.00%), Query Frame = 1 
Query:   22 SNLSMNQTLEGHEGSVVCVTWNATYSKLTTCDERGLIIVWMLHKGLWFEEMINNRNKSAVRDMK 213
            SNLSMNQTLEGHEGSVVCVTWNATYSKLTTCDE+GLIIVWMLHKGLWFEEMINNR+KSAVRDMK
Sbjct:   77 SNLSMNQTLEGHEGSVVCVTWNATYSKLTTCDEQGLIIVWMLHKGLWFEEMINNRHKSAVRDMK 140
[Close]
BLAST of mRNA_S-dermatodea_contig9705.17707.1 vs. uniprot
Match: A0A7S2BR82_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BR82_9STRA)

HSP 1 Score: 120 bits (302), Expect = 2.170e-33
Identity = 54/64 (84.38%), Postives = 57/64 (89.06%), Query Frame = 1 
Query:   22 SNLSMNQTLEGHEGSVVCVTWNATYSKLTTCDERGLIIVWMLHKGLWFEEMINNRNKSAVRDMK 213
            SNLSMNQTL+GH G VVCVTWNA Y KLTT DE GLIIVWMLHKG+WFEEMINNRNKS V+DMK
Sbjct:   57 SNLSMNQTLDGHHGKVVCVTWNALYRKLTTSDESGLIIVWMLHKGMWFEEMINNRNKSVVKDMK 120
[Close]
BLAST of mRNA_S-dermatodea_contig9705.17707.1 vs. uniprot
Match: A0A7S3Y5Z0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5Z0_HETAK)

HSP 1 Score: 120 bits (302), Expect = 2.360e-33
Identity = 55/67 (82.09%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:   13 GGGSNLSMNQTLEGHEGSVVCVTWNATYSKLTTCDERGLIIVWMLHKGLWFEEMINNRNKSAVRDMK 213
            G  SNLSMNQTLEGH GSV CVTWNA Y KLTT D+ GLIIVWMLHKG+WFEEMINNRNKS V DMK
Sbjct:    2 GPSSNLSMNQTLEGHNGSVCCVTWNANYRKLTTSDQNGLIIVWMLHKGMWFEEMINNRNKSVVNDMK 68
[Close]
BLAST of mRNA_S-dermatodea_contig9705.17707.1 vs. uniprot
Match: A0A2J7ZHB6_9CHLO (WD repeat domain-containing protein (Fragment) n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZHB6_9CHLO)

HSP 1 Score: 116 bits (291), Expect = 3.330e-31
Identity = 52/68 (76.47%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:   10 GGGGSNLSMNQTLEGHEGSVVCVTWNATYSKLTTCDERGLIIVWMLHKGLWFEEMINNRNKSAVRDMK 213
            G  G NLS+NQTLEGH G+VVCV WN  + KLTT DE GLIIVWMLHKG+WFEEMINNRNKS V+DMK
Sbjct:   58 GAAGGNLSLNQTLEGHNGAVVCVCWNNAFQKLTTSDEFGLIIVWMLHKGMWFEEMINNRNKSVVKDMK 125
[Close]
BLAST of mRNA_S-dermatodea_contig9705.17707.1 vs. uniprot
Match: A0A7S0AX46_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0AX46_9DINO)

HSP 1 Score: 115 bits (287), Expect = 9.520e-31
Identity = 49/68 (72.06%), Postives = 59/68 (86.76%), Query Frame = 1 
Query:   10 GGGGSNLSMNQTLEGHEGSVVCVTWNATYSKLTTCDERGLIIVWMLHKGLWFEEMINNRNKSAVRDMK 213
            GG   NLSMNQTLEGH+G+++ +TWNA + KLTT D+ GLIIVWMLH+G+WFEEMINNRN+S VRDMK
Sbjct:   60 GGAQGNLSMNQTLEGHQGNIMVITWNANFRKLTTSDQNGLIIVWMLHRGIWFEEMINNRNRSVVRDMK 127
[Close]
BLAST of mRNA_S-dermatodea_contig9705.17707.1 vs. uniprot
Match: A0A7S0WI31_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WI31_9CHLO)

HSP 1 Score: 115 bits (287), Expect = 1.090e-30
Identity = 54/71 (76.06%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:    1 APTGGGGSNLSMNQTLEGHEGSVVCVTWNATYSKLTTCDERGLIIVWMLHKGLWFEEMINNRNKSAVRDMK 213
            A  G   SNLSMNQTLEGH GSV+ V WN  Y KLTT D+ GLIIVWMLHKG+WFEEMINNRNKS VRDMK
Sbjct:   54 AKGGPAASNLSMNQTLEGHNGSVMVVNWNENYRKLTTSDQYGLIIVWMLHKGMWFEEMINNRNKSVVRDMK 124
[Close]
BLAST of mRNA_S-dermatodea_contig9705.17707.1 vs. uniprot
Match: F0XVP7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVP7_AURAN)

HSP 1 Score: 122 bits (305), Expect = 1.200e-30
Identity = 57/71 (80.28%), Postives = 60/71 (84.51%), Query Frame = 1 
Query:    1 APTGGGGSNLSMNQTLEGHEGSVVCVTWNATYSKLTTCDERGLIIVWMLHKGLWFEEMINNRNKSAVRDMK 213
            AP G   SNLSMNQTLEGH GSV+CVTWNA Y KLTT D+ GLIIVWMLHKG+WFEEMINNRNKS VR MK
Sbjct:   76 APGGSVPSNLSMNQTLEGHHGSVMCVTWNANYRKLTTSDQNGLIIVWMLHKGVWFEEMINNRNKSVVRAMK 146
[Close]
BLAST of mRNA_S-dermatodea_contig9705.17707.1 vs. uniprot
Match: A0A835YIA3_9STRA (WD40 repeat protein flagellar associated protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIA3_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.640e-30
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:   19 GSNLSMNQTLEGHEGSVVCVTWNATYSKLTTCDERGLIIVWMLHKGLWFEEMINNRNKSAVRDMK 213
            GS+LSMNQTLEGH GSV+CVTWN+ YSKLTT DE GLIIVWMLHKG+W+EEMINNR KS VRDMK
Sbjct:   56 GSDLSMNQTLEGHNGSVMCVTWNSNYSKLTTSDENGLIIVWMLHKGMWYEEMINNRGKSVVRDMK 120
[Close]
BLAST of mRNA_S-dermatodea_contig9705.17707.1 vs. uniprot
Match: A0A7S0HEY4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HEY4_9EUKA)

HSP 1 Score: 115 bits (288), Expect = 1.900e-30
Identity = 52/64 (81.25%), Postives = 55/64 (85.94%), Query Frame = 1 
Query:   22 SNLSMNQTLEGHEGSVVCVTWNATYSKLTTCDERGLIIVWMLHKGLWFEEMINNRNKSAVRDMK 213
            SNLSMNQTLEGH GSV+CV WN  Y KLTT D+ GLIIVWMLHKG+WFEEMINNRNKS VR MK
Sbjct:   70 SNLSMNQTLEGHNGSVMCVCWNENYRKLTTSDQYGLIIVWMLHKGMWFEEMINNRNKSTVRGMK 133
[Close]
BLAST of mRNA_S-dermatodea_contig9705.17707.1 vs. uniprot
Match: A0A7S2I0P8_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2I0P8_9DINO)

HSP 1 Score: 113 bits (282), Expect = 2.100e-30
Identity = 48/67 (71.64%), Postives = 58/67 (86.57%), Query Frame = 1 
Query:   13 GGGSNLSMNQTLEGHEGSVVCVTWNATYSKLTTCDERGLIIVWMLHKGLWFEEMINNRNKSAVRDMK 213
            G   NLSMNQTLEGH+G+++ +TWNA + KLTT D+ GLIIVWMLH+G+WFEEMINNRN+S VRDMK
Sbjct:    7 GAQGNLSMNQTLEGHQGNIMVITWNANFRKLTTSDQNGLIIVWMLHRGIWFEEMINNRNRSVVRDMK 73
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9705.17707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWE2_ECTSI1.660e-3596.88WD40 repeat protein flagellar associated protein n... [more]
A0A7S2BR82_9STRA2.170e-3384.38Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S3Y5Z0_HETAK2.360e-3382.09Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A2J7ZHB6_9CHLO3.330e-3176.47WD repeat domain-containing protein (Fragment) n=1... [more]
A0A7S0AX46_9DINO9.520e-3172.06Hypothetical protein (Fragment) n=1 Tax=Pyrodinium... [more]
A0A7S0WI31_9CHLO1.090e-3076.06Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
F0XVP7_AURAN1.200e-3080.28Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A835YIA3_9STRA1.640e-3083.08WD40 repeat protein flagellar associated protein n... [more]
A0A7S0HEY4_9EUKA1.900e-3081.25Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A7S2I0P8_9DINO2.100e-3071.64Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9705contigS-dermatodea_contig9705:6798..7593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score123.2
Seed ortholog evalue4.7e-26
Seed eggNOG ortholog44056.XP_009032299.1
KEGG koko:K19674
GOsGO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005815,GO:0005856,GO:0005929,GO:0005930,GO:0006810,GO:0006928,GO:0006935,GO:0006996,GO:0007017,GO:0007018,GO:0008104,GO:0008150,GO:0008289,GO:0009605,GO:0009987,GO:0010970,GO:0015630,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0030705,GO:0030990,GO:0030991,GO:0031503,GO:0032838,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035091,GO:0035721,GO:0036064,GO:0040011,GO:0042073,GO:0042221,GO:0042330,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0046907,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060271,GO:0061512,GO:0070727,GO:0070925,GO:0071840,GO:0097014,GO:0097730,GO:0099111,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1905515
EggNOG free text desc.cellular response to paclitaxel
EggNOG OGsKOG2041@1,KOG2041@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925426.7229822-CDS-S-dermatodea_contig9705:6797..68661622925426.7229822-CDS-S-dermatodea_contig9705:6797..6866Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9705 6798..6866 +
1694079925.6517506-CDS-S-dermatodea_contig9705:6797..68661694079925.6517506-CDS-S-dermatodea_contig9705:6797..6866Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9705 6798..6866 +
1622925426.7336028-CDS-S-dermatodea_contig9705:7449..75931622925426.7336028-CDS-S-dermatodea_contig9705:7449..7593Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9705 7450..7593 +
1694079925.6655512-CDS-S-dermatodea_contig9705:7449..75931694079925.6655512-CDS-S-dermatodea_contig9705:7449..7593Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9705 7450..7593 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9705.17707.1prot_S-dermatodea_contig9705.17707.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9705 6798..7593 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9705.17707.1

>prot_S-dermatodea_contig9705.17707.1 ID=prot_S-dermatodea_contig9705.17707.1|Name=mRNA_S-dermatodea_contig9705.17707.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=71bp
APTGGGGSNLSMNQTLEGHEGSVVCVTWNATYSKLTTCDERGLIIVWMLH
KGLWFEEMINNRNKSAVRDMK
back to top

mRNA from alignment at S-dermatodea_contig9705:6798..7593+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9705.17707.1 ID=mRNA_S-dermatodea_contig9705.17707.1|Name=mRNA_S-dermatodea_contig9705.17707.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=796bp|location=Sequence derived from alignment at S-dermatodea_contig9705:6798..7593+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCCCAACAGGAGGTGGCGGCTCAAACCTAAGCATGAATCAAACGCTCGA
GGGGCACGAGGGCTCGGTGGTAAGCCTAAGTCACACTACTTGTACATGAA
GGAAGATCTTCGTGTCGAGAATGCCAACTGCGTGTACCAGCAGGCGCAGG
AGGGTGTCTAAGAACATTTTCCCCCCTGTTAGCGTTGGAGGTGCTACACA
CGAGTTGATTCCACCGTGTTCCGGAAAACAAAGTATCAGCAAGAACGTGG
TTTTCGATGTCGAGGGATGGCATGGTCATGTCACCCCCGGTCGGAGATGC
TTCTGGCGGTGATTACCTAAACCGACGAATTTTTGACGAGGCCCACGGGG
AATCAAACGGACCCTGGGGCCGCGAACGGCACTGAAGCACGGGCTCGAAA
GTGGCTATGATCACTGTCAATCGCGAGAGAGTGCTTGCATTGGAAAAGGG
AGAACCGACGACATCAAACGCGAGAAGTGGCACGATGAAGTAGAACCCGG
ATCTAGGAGCAGTTTTGGCACTGCTGTCTTGCGATGAAGTCAATACCGTT
CCTATCATGGGCAGACCTGTTGGGGTGTTATATTTTAAACGCGACAACGC
CCGTCTCGATTCTGGGAAAATCCCCCGGACACGCGAATAATATGGTACCC
AGGTCTGTGTTACCTGGAACGCAACGTACTCAAAGCTCACAACTTGCGAC
GAGCGAGGCCTGATCATCGTTTGGATGCTGCACAAGGGCCTGTGGTTCGA
GGAGATGATCAACAACCGCAACAAGTCGGCTGTCAGGGACATGAAG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig9705:6798..7593+

>mRNA_S-dermatodea_contig9705.17707.1 ID=mRNA_S-dermatodea_contig9705.17707.1|Name=mRNA_S-dermatodea_contig9705.17707.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at S-dermatodea_contig9705:6798..7593+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCCCAACAGGAGGTGGCGGCTCAAACCTAAGCATGAATCAAACGCTCGA
GGGGCACGAGGGCTCGGTGGCCCCAACAGGAGGTGGCGGCTCAAACCTAA
GCATGAATCAAACGCTCGAGGGGCACGAGGGCTCGGTGGTCTGTGTTACC
TGGAACGCAACGTACTCAAAGCTCACAACTTGCGACGAGCGAGGCCTGAT
CATCGTTTGGATGCTGCACAAGGGCCTGTGGTTCGAGGAGATGATCAACA
ACCGCAACAAGTCGGCTGTCAGGGACATGAAGGTCTGTGTTACCTGGAAC
GCAACGTACTCAAAGCTCACAACTTGCGACGAGCGAGGCCTGATCATCGT
TTGGATGCTGCACAAGGGCCTGTGGTTCGAGGAGATGATCAACAACCGCA
ACAAGTCGGCTGTCAGGGACATGAAG
back to top