mRNA_S-dermatodea_contig97018.17702.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig97018.17702.1
Unique NamemRNA_S-dermatodea_contig97018.17702.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig97018.17702.1 vs. uniprot
Match: A0A6H5KQK5_9PHAE (PSP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KQK5_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 9.150e-30
Identity = 56/62 (90.32%), Postives = 59/62 (95.16%), Query Frame = 1 
Query:   43 LLLQSYRNTVPVPRHWCQKRKYLQGKRGIEKTPFELPEFIAMTGIDKIRAAIEEADSLKKVR 228
            + L+SYRNTVPVPRHWCQKRKYLQGKRGIEKTPFELPEFIAMTGIDKIRAAIEEADS KK +
Sbjct:  254 VFLKSYRNTVPVPRHWCQKRKYLQGKRGIEKTPFELPEFIAMTGIDKIRAAIEEADSQKKAK 315
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BLAST of mRNA_S-dermatodea_contig97018.17702.1 vs. uniprot
Match: A0A7S2AZW4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AZW4_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 8.970e-25
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:   49 LQSYRNTVPVPRHWCQKRKYLQGKRGIEKTPFELPEFIAMTGIDKIRAAIEEADSLKKVR 228
            L+SYRN+VPVPRHWC KRKYLQGKRG++KTPFELPEFIA TGI+KIR AI E +   K +
Sbjct:   17 LKSYRNSVPVPRHWCHKRKYLQGKRGLDKTPFELPEFIAQTGIEKIRTAIIEQEEQMKAK 76
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BLAST of mRNA_S-dermatodea_contig97018.17702.1 vs. uniprot
Match: W1PIM2_AMBTC (DUF382 domain-containing protein (Fragment) n=1 Tax=Amborella trichopoda TaxID=13333 RepID=W1PIM2_AMBTC)

HSP 1 Score: 98.6 bits (244), Expect = 1.450e-23
Identity = 44/62 (70.97%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:   43 LLLQSYRNTVPVPRHWCQKRKYLQGKRGIEKTPFELPEFIAMTGIDKIRAAIEEADSLKKVR 228
            + L+SYRNTVPVPRHWCQKRK+LQGKRGIEK PF+LP+FIA TGI+KIR A  E +  KK++
Sbjct:  128 VFLKSYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLK 189
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BLAST of mRNA_S-dermatodea_contig97018.17702.1 vs. uniprot
Match: A0A833QN24_9POAL (Proline-rich spliceosome-associated family protein isoform 2 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833QN24_9POAL)

HSP 1 Score: 98.2 bits (243), Expect = 4.490e-23
Identity = 44/60 (73.33%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:   49 LQSYRNTVPVPRHWCQKRKYLQGKRGIEKTPFELPEFIAMTGIDKIRAAIEEADSLKKVR 228
            L+SYRNTVPVPRHWCQKRK+LQGKRGIEK PF+LP+FIA TGI+KIR A  E +  KK++
Sbjct:  135 LKSYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLK 194
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BLAST of mRNA_S-dermatodea_contig97018.17702.1 vs. uniprot
Match: A0A836CFT2_9STRA (Proline-rich spliceosome-associated family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFT2_9STRA)

HSP 1 Score: 100 bits (250), Expect = 5.290e-23
Identity = 45/57 (78.95%), Postives = 50/57 (87.72%), Query Frame = 1 
Query:   49 LQSYRNTVPVPRHWCQKRKYLQGKRGIEKTPFELPEFIAMTGIDKIRAAIEEADSLK 219
            L+SYRNTVPVPRHWC KRKYLQGKRGIEK PFELPEFIAMTGI K+R  ++EAD  +
Sbjct:  182 LKSYRNTVPVPRHWCHKRKYLQGKRGIEKKPFELPEFIAMTGISKLRDNVDEADGKR 238
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BLAST of mRNA_S-dermatodea_contig97018.17702.1 vs. uniprot
Match: L8H7N6_ACACA (PSP, prolinerich, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H7N6_ACACA)

HSP 1 Score: 100 bits (250), Expect = 5.450e-23
Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:   49 LQSYRNTVPVPRHWCQKRKYLQGKRGIEKTPFELPEFIAMTGIDKIRAAIEEADSLKKVR 228
            L+SYRN+VPVPRHWCQKRKYLQGKRGI K PFELPEFIA TGI +IR A++E D  KK++
Sbjct:  198 LKSYRNSVPVPRHWCQKRKYLQGKRGIAKPPFELPEFIAATGISRIRQALQEEDDKKKLK 257
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BLAST of mRNA_S-dermatodea_contig97018.17702.1 vs. uniprot
Match: A0A803LLD4_CHEQI (PSP domain-containing protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LLD4_CHEQI)

HSP 1 Score: 100 bits (248), Expect = 5.620e-23
Identity = 45/62 (72.58%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:   43 LLLQSYRNTVPVPRHWCQKRKYLQGKRGIEKTPFELPEFIAMTGIDKIRAAIEEADSLKKVR 228
            + L+SYRNTVPVPRHWCQKRKYLQGKRGIEK PF+LP+FIA TGI+KIR A  E +  KK++
Sbjct:  133 VFLKSYRNTVPVPRHWCQKRKYLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLK 194
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BLAST of mRNA_S-dermatodea_contig97018.17702.1 vs. uniprot
Match: A0A166IT43_DAUCS (PSP domain-containing protein n=2 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A166IT43_DAUCS)

HSP 1 Score: 100 bits (249), Expect = 7.340e-23
Identity = 45/62 (72.58%), Postives = 54/62 (87.10%), Query Frame = 1 
Query:   43 LLLQSYRNTVPVPRHWCQKRKYLQGKRGIEKTPFELPEFIAMTGIDKIRAAIEEADSLKKVR 228
            + L+SYRNTVPVPRHWCQKRK+LQGKRGIEKTPF+LP+FIA TGI+KIR A  E +  KK++
Sbjct:  186 VFLKSYRNTVPVPRHWCQKRKFLQGKRGIEKTPFQLPDFIAATGIEKIRQAYIEKEDNKKLK 247
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BLAST of mRNA_S-dermatodea_contig97018.17702.1 vs. uniprot
Match: A0A803LPT9_CHEQI (PSP domain-containing protein n=3 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LPT9_CHEQI)

HSP 1 Score: 100 bits (248), Expect = 9.550e-23
Identity = 45/62 (72.58%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:   43 LLLQSYRNTVPVPRHWCQKRKYLQGKRGIEKTPFELPEFIAMTGIDKIRAAIEEADSLKKVR 228
            + L+SYRNTVPVPRHWCQKRKYLQGKRGIEK PF+LP+FIA TGI+KIR A  E +  KK++
Sbjct:  204 VFLKSYRNTVPVPRHWCQKRKYLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLK 265
[Close]
BLAST of mRNA_S-dermatodea_contig97018.17702.1 vs. uniprot
Match: A0A2P2L7W2_RHIMU (Pliceosome associated family protein n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2L7W2_RHIMU)

HSP 1 Score: 98.6 bits (244), Expect = 9.580e-23
Identity = 44/62 (70.97%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:   43 LLLQSYRNTVPVPRHWCQKRKYLQGKRGIEKTPFELPEFIAMTGIDKIRAAIEEADSLKKVR 228
            + L+SYRNTVPVPRHWCQKRK+LQGKRGIEK PF+LP+FIA TGI+KIR A  E +  KK++
Sbjct:  200 VFLKSYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLK 261
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig97018.17702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQK5_9PHAE9.150e-3090.32PSP domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2AZW4_9STRA8.970e-2573.33Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
W1PIM2_AMBTC1.450e-2370.97DUF382 domain-containing protein (Fragment) n=1 Ta... [more]
A0A833QN24_9POAL4.490e-2373.33Proline-rich spliceosome-associated family protein... [more]
A0A836CFT2_9STRA5.290e-2378.95Proline-rich spliceosome-associated family protein... [more]
L8H7N6_ACACA5.450e-2375.00PSP, prolinerich, putative n=1 Tax=Acanthamoeba ca... [more]
A0A803LLD4_CHEQI5.620e-2372.58PSP domain-containing protein n=1 Tax=Chenopodium ... [more]
A0A166IT43_DAUCS7.340e-2372.58PSP domain-containing protein n=2 Tax=Daucus carot... [more]
A0A803LPT9_CHEQI9.550e-2372.58PSP domain-containing protein n=3 Tax=Chenopodium ... [more]
A0A2P2L7W2_RHIMU9.580e-2370.97Pliceosome associated family protein n=1 Tax=Rhizo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig97018contigS-dermatodea_contig97018:110..364 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.2
Seed ortholog evalue4.8e-25
Seed eggNOG ortholog2880.D7FNF6
Preferred nameSF3B2
KEGG koko:K12829,ko:K16061
KEGG Pathwayko03040,ko04120,ko04215,ko05145,ko05200,ko05222,map03040,map04120,map04215,map05145,map05200,map05222
KEGG ModuleM00352
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005686,GO:0005689,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0065003,GO:0070013,GO:0071004,GO:0071010,GO:0071011,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1990904
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsCOG5182@1,KOG2330@2759
COG Functional cat.AV
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size255
Cds size255
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925426.2713063-CDS-S-dermatodea_contig97018:109..3641622925426.2713063-CDS-S-dermatodea_contig97018:109..364Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig97018 110..364 -
1694079925.3295748-CDS-S-dermatodea_contig97018:109..3641694079925.3295748-CDS-S-dermatodea_contig97018:109..364Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig97018 110..364 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig97018.17702.1prot_S-dermatodea_contig97018.17702.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig97018 110..364 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig97018.17702.1

>prot_S-dermatodea_contig97018.17702.1 ID=prot_S-dermatodea_contig97018.17702.1|Name=mRNA_S-dermatodea_contig97018.17702.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=85bp
MSTPPPRPPAPPAPLLLQSYRNTVPVPRHWCQKRKYLQGKRGIEKTPFEL
PEFIAMTGIDKIRAAIEEADSLKKVRDSYPTHNC*
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mRNA from alignment at S-dermatodea_contig97018:110..364-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig97018.17702.1 ID=mRNA_S-dermatodea_contig97018.17702.1|Name=mRNA_S-dermatodea_contig97018.17702.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=255bp|location=Sequence derived from alignment at S-dermatodea_contig97018:110..364- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGTACCCCACCCCCCCGCCCCCCCGCCCCCCCCGCCCCCCTCCTCCT
CCAGTCGTACCGCAACACCGTGCCGGTCCCGCGACACTGGTGCCAAAAGC
GCAAGTATCTCCAGGGGAAGCGAGGGATAGAGAAGACACCGTTCGAGCTG
CCGGAGTTCATCGCCATGACCGGTATCGACAAGATTAGGGCGGCGATCGA
GGAGGCGGACAGCCTCAAAAAGGTGCGAGATTCGTATCCTACTCATAACT
GTTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig97018:110..364-

>mRNA_S-dermatodea_contig97018.17702.1 ID=mRNA_S-dermatodea_contig97018.17702.1|Name=mRNA_S-dermatodea_contig97018.17702.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at S-dermatodea_contig97018:110..364- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGTACCCCACCCCCCCGCCCCCCCGCCCCCCCCGCCCCCCTCCTCCT
CCAGTCGTACCGCAACACCGTGCCGGTCCCGCGACACTGGTGCCAAAAGC
GCAAGTATCTCCAGGGGAAGCGAGGGATAGAGAAGACACCGTTCGAGCTG
CCGGAGTTCATCGCCATGACCGGTATCGACAAGATTAGGGCGGCGATCGA
GGAGGCGGACAGCCTCAAAAAGGTGCGAGATTCGTATCCTACTCATAACT
GTTAAATGAGTACCCCACCCCCCCGCCCCCCCGCCCCCCCCGCCCCCCTC
CTCCTCCAGTCGTACCGCAACACCGTGCCGGTCCCGCGACACTGGTGCCA
AAAGCGCAAGTATCTCCAGGGGAAGCGAGGGATAGAGAAGACACCGTTCG
AGCTGCCGGAGTTCATCGCCATGACCGGTATCGACAAGATTAGGGCGGCG
ATCGAGGAGGCGGACAGCCTCAAAAAGGTGCGAGATTCGTATCCTACTCA
TAACTGTTAA
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